Wall clock time and date at job start Tue Mar 31 2020 18:51:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47329 * 2 1 4 4 N 1.30498 * 125.64955 * 270.17683 * 3 2 1 5 5 C 1.34138 * 109.25392 * 180.28882 * 4 3 2 6 6 C 1.34671 * 108.01584 * 359.72689 * 5 4 3 7 7 N 1.35043 * 125.64680 * 89.99517 * 3 2 1 8 8 C 1.46495 * 126.39830 * 359.97438 * 7 3 2 9 9 H 1.08998 * 109.47543 * 359.70910 * 8 7 3 10 10 C 1.53003 * 109.46924 * 239.70873 * 8 7 3 11 11 C 1.53008 * 109.47135 * 119.71022 * 8 7 3 12 12 C 1.50700 * 109.47105 * 184.99647 * 11 8 7 13 13 O 1.21280 * 120.00086 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00093 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00276 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46908 * 179.97438 * 15 14 12 17 17 H 1.08994 * 112.85258 * 316.19076 * 16 15 14 18 18 C 1.53777 * 113.68937 * 87.46603 * 16 15 14 19 19 C 1.53785 * 87.08241 * 139.98701 * 18 16 15 20 20 H 1.09002 * 113.61570 * 220.01842 * 19 18 16 21 21 N 1.46500 * 113.68813 * 89.12417 * 19 18 16 22 22 C 1.36936 * 119.99618 * 105.94148 * 21 19 18 23 23 H 1.07990 * 120.00427 * 359.97438 * 22 21 19 24 24 C 1.38824 * 119.99622 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00063 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99662 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47100 * 90.00073 * 26 24 22 28 28 H 1.48504 * 109.47148 * 209.99685 * 26 24 22 29 29 H 1.48493 * 109.47533 * 329.99863 * 26 24 22 30 30 C 1.53781 * 87.08241 * 334.56547 * 19 18 16 31 31 H 1.09001 * 109.46953 * 300.00194 * 1 2 3 32 32 H 1.09003 * 109.46819 * 59.99841 * 1 2 3 33 33 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46953 * 239.99806 * 2 1 3 35 35 H 1.09003 * 109.46819 * 120.00159 * 2 1 3 36 36 H 1.07991 * 125.98519 * 179.71964 * 5 4 3 37 37 H 1.08001 * 126.58433 * 180.02562 * 6 5 4 38 38 H 1.08991 * 109.47316 * 60.00111 * 10 8 7 39 39 H 1.09000 * 109.46997 * 180.02562 * 10 8 7 40 40 H 1.08997 * 109.47152 * 299.99569 * 10 8 7 41 41 H 1.08997 * 109.46947 * 65.00016 * 11 8 7 42 42 H 1.08996 * 109.47137 * 305.00057 * 11 8 7 43 43 H 0.97005 * 119.99889 * 359.97438 * 14 12 11 44 44 H 1.08993 * 109.46882 * 59.99609 * 15 14 12 45 45 H 1.09002 * 109.46663 * 300.00151 * 15 14 12 46 46 H 1.08999 * 113.61947 * 25.44127 * 18 16 15 47 47 H 1.08997 * 113.61348 * 254.53341 * 18 16 15 48 48 H 0.96998 * 120.00149 * 285.93056 * 21 19 18 49 49 H 0.96996 * 120.00147 * 180.02562 * 25 24 22 50 50 H 1.09000 * 113.61578 * 139.97748 * 30 19 18 51 51 H 1.09001 * 113.61682 * 270.80327 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2829 2.1389 -1.0604 5 6 2.7190 3.3496 -0.6818 6 6 2.7337 3.3848 0.6644 7 7 2.2947 2.1628 1.0974 8 6 2.1435 1.7373 2.4910 9 1 1.7750 0.7119 2.5199 10 6 1.1476 2.6573 3.2000 11 6 3.4989 1.8122 3.1970 12 6 3.3694 1.2593 4.5929 13 8 2.2987 0.8456 4.9844 14 7 4.4437 1.2236 5.4060 15 6 4.3179 0.6856 6.7629 16 6 5.6735 0.7595 7.4683 17 1 6.4994 0.4402 6.8328 18 6 5.9268 2.0981 8.1815 19 6 6.5583 1.2815 9.3214 20 1 6.3065 1.6516 10.3152 21 7 7.9936 1.0435 9.1497 22 6 8.8978 1.7309 9.9146 23 1 8.5530 2.4486 10.6441 24 6 10.2579 1.5050 9.7523 25 7 10.6782 0.6299 8.8636 26 14 11.4914 2.4431 10.7953 27 1 11.7663 1.6825 12.0408 28 1 12.7538 2.6168 10.0327 29 1 10.9349 3.7755 11.1416 30 6 5.6797 0.1065 8.8607 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0077 4.1548 -1.3410 37 1 3.0338 4.2175 1.2832 38 1 0.1822 2.6040 2.6971 39 1 1.0355 2.3410 4.2370 40 1 1.5162 3.6827 3.1712 41 1 3.8259 2.8508 3.2465 42 1 4.2311 1.2269 2.6409 43 1 5.3004 1.5534 5.0925 44 1 3.9907 -0.3529 6.7130 45 1 3.5859 1.2709 7.3193 46 1 5.0137 2.6183 8.4711 47 1 6.6355 2.7426 7.6616 48 1 8.3034 0.3990 8.4943 49 1 11.6285 0.4718 8.7505 50 1 6.1889 -0.8568 8.8890 51 1 4.6995 0.0813 9.3369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691785966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:49 Heat of formation + Delta-G solvation = 40.888749 kcal Electronic energy + Delta-G solvation = -28199.730471 eV Core-core repulsion = 24328.601563 eV Total energy + Delta-G solvation = -3871.128908 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.46856 -40.15065 -38.68506 -36.06977 -34.77995 -34.12500 -33.29625 -31.26184 -30.29078 -28.91535 -28.84444 -26.87942 -25.15290 -24.24838 -23.85563 -23.30631 -21.85721 -21.38877 -20.50632 -19.56231 -18.49991 -17.78931 -17.41538 -16.70026 -16.26725 -15.97273 -15.58489 -15.17646 -14.99744 -14.57626 -14.47026 -14.34957 -14.09506 -13.80846 -13.73044 -13.53299 -13.34125 -13.23869 -12.96875 -12.63677 -12.47171 -12.16349 -12.01051 -11.97350 -11.89138 -11.64017 -11.46613 -11.40426 -11.11068 -10.90532 -10.57691 -10.37268 -10.22421 -10.15585 -9.94226 -9.82485 -9.76113 -9.56291 -9.16112 -8.95003 -8.60156 -7.07102 -5.87144 -3.16454 1.78110 2.31692 2.36395 2.92176 3.09333 3.37313 3.42887 3.44289 4.01701 4.10508 4.27598 4.39611 4.49936 4.55071 4.68732 4.81048 4.90914 4.92740 4.97333 4.98716 5.05292 5.07104 5.13893 5.26660 5.30492 5.38297 5.39599 5.45553 5.51424 5.52251 5.59947 5.67340 5.75346 5.79938 5.83117 5.85541 6.00996 6.09779 6.11833 6.26268 6.28551 6.49839 6.53561 6.65326 6.80275 6.93227 6.95657 7.28707 7.63026 7.88424 7.96070 8.31933 9.42746 9.99694 10.33768 11.35200 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.001839 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.272837 B =15223.772221 C =15915.826726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C 0.209 3.791 4 N -0.492 5.492 5 C -0.030 4.030 6 C -0.056 4.056 7 N -0.449 5.449 8 C 0.147 3.853 9 H 0.111 0.889 10 C -0.165 4.165 11 C -0.154 4.154 12 C 0.517 3.483 13 O -0.543 6.543 14 N -0.720 5.720 15 C 0.130 3.870 16 C -0.120 4.120 17 H 0.093 0.907 18 C -0.168 4.168 19 C 0.167 3.833 20 H 0.062 0.938 21 N -0.706 5.706 22 C -0.244 4.244 23 H 0.072 0.928 24 C -0.012 4.012 25 N -0.932 5.932 26 Si 0.909 3.091 27 H -0.289 1.289 28 H -0.291 1.291 29 H -0.281 1.281 30 C -0.147 4.147 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.095 0.905 35 H 0.078 0.922 36 H 0.168 0.832 37 H 0.171 0.829 38 H 0.062 0.938 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.102 0.898 42 H 0.101 0.899 43 H 0.404 0.596 44 H 0.065 0.935 45 H 0.067 0.933 46 H 0.067 0.933 47 H 0.066 0.934 48 H 0.385 0.615 49 H 0.256 0.744 50 H 0.068 0.932 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.797 1.736 -15.361 25.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.080 4.080 3 C -0.053 4.053 4 N -0.211 5.211 5 C -0.178 4.178 6 C -0.189 4.189 7 N -0.132 5.132 8 C 0.044 3.956 9 H 0.129 0.871 10 C -0.222 4.222 11 C -0.195 4.195 12 C 0.302 3.698 13 O -0.421 6.421 14 N -0.370 5.370 15 C 0.008 3.992 16 C -0.139 4.139 17 H 0.111 0.889 18 C -0.210 4.210 19 C 0.055 3.945 20 H 0.080 0.920 21 N -0.344 5.344 22 C -0.375 4.375 23 H 0.090 0.910 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.740 3.260 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 C -0.187 4.187 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.096 0.904 36 H 0.185 0.815 37 H 0.188 0.812 38 H 0.081 0.919 39 H 0.116 0.884 40 H 0.078 0.922 41 H 0.121 0.879 42 H 0.120 0.880 43 H 0.239 0.761 44 H 0.083 0.917 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.085 0.915 48 H 0.219 0.781 49 H 0.066 0.934 50 H 0.087 0.913 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -20.531 1.248 -15.593 25.811 hybrid contribution 1.563 0.949 0.916 2.045 sum -18.969 2.197 -14.676 24.084 Atomic orbital electron populations 1.21743 0.93879 1.02363 1.02504 1.19989 0.96535 0.87461 1.04031 1.23282 1.04081 0.96601 0.81360 1.70244 1.18284 1.04314 1.28259 1.22271 1.06412 0.96331 0.92783 1.22623 1.09291 0.90198 0.96761 1.45609 1.48720 1.11813 1.07039 1.21154 0.95370 1.01543 0.77513 0.87101 1.22274 0.98228 0.98781 1.02966 1.22018 0.98750 1.04397 0.94350 1.20183 0.84254 0.78744 0.86593 1.90688 1.27041 1.47969 1.76445 1.46081 1.12297 1.63579 1.15058 1.21521 0.98164 0.98704 0.80857 1.22717 0.95348 0.99678 0.96135 0.88876 1.23888 1.00434 0.95748 1.00891 1.21050 0.85106 0.92803 0.95558 0.92023 1.42164 0.98510 1.48494 1.45260 1.19283 0.87057 1.16888 1.14239 0.90978 1.24774 0.97026 0.99604 0.99456 1.69654 1.14225 1.37213 1.36927 0.86164 0.80995 0.79310 0.79556 1.21621 1.21737 1.20697 1.23431 1.00466 0.99946 0.94842 0.92774 0.91893 0.91528 0.88681 0.90398 0.81470 0.81153 0.91942 0.88359 0.92194 0.87935 0.88042 0.76145 0.91692 0.91428 0.91436 0.91507 0.78126 0.93399 0.91295 0.90424 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 9.90 37.16 0.37 -0.62 16 2 C -0.04 -0.31 6.08 -27.88 -0.17 -0.48 16 3 C 0.21 2.13 7.16 -155.42 -1.11 1.02 16 4 N -0.49 -5.93 11.25 -10.82 -0.12 -6.05 16 5 C -0.03 -0.30 11.87 -17.81 -0.21 -0.52 16 6 C -0.06 -0.49 10.70 -16.56 -0.18 -0.66 16 7 N -0.45 -4.00 2.61 -106.83 -0.28 -4.28 16 8 C 0.15 1.17 2.64 -67.93 -0.18 0.99 16 9 H 0.11 0.92 6.49 -51.93 -0.34 0.58 16 10 C -0.16 -1.31 8.99 37.16 0.33 -0.98 16 11 C -0.15 -1.14 5.18 -27.88 -0.14 -1.29 16 12 C 0.52 5.22 7.55 -10.99 -0.08 5.14 16 13 O -0.54 -7.03 13.97 5.56 0.08 -6.95 16 14 N -0.72 -7.24 5.56 -60.30 -0.33 -7.58 16 15 C 0.13 1.53 5.51 -4.04 -0.02 1.50 16 16 C -0.12 -1.63 3.64 -89.80 -0.33 -1.96 16 17 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 18 C -0.17 -2.60 7.44 -25.92 -0.19 -2.79 16 19 C 0.17 3.10 4.55 -67.12 -0.31 2.79 16 20 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 21 N -0.71 -16.77 5.31 -52.63 -0.28 -17.05 16 22 C -0.24 -6.52 9.97 -15.06 -0.15 -6.67 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 25 N -0.93 -27.25 13.06 55.49 0.72 -26.52 16 26 Si 0.91 21.76 29.55 -169.99 -5.02 16.74 16 27 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 30 C -0.15 -2.20 7.38 -25.91 -0.19 -2.39 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 0.51 7.09 -51.93 -0.37 0.14 16 36 H 0.17 1.31 8.06 -52.49 -0.42 0.89 16 37 H 0.17 1.04 8.06 -52.49 -0.42 0.61 16 38 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.10 0.93 5.95 -51.93 -0.31 0.62 16 40 H 0.06 0.43 7.95 -51.93 -0.41 0.02 16 41 H 0.10 0.63 8.09 -51.93 -0.42 0.21 16 42 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.40 3.51 8.47 -40.82 -0.35 3.17 16 44 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 45 H 0.07 0.82 7.85 -51.93 -0.41 0.41 16 46 H 0.07 0.93 7.90 -51.93 -0.41 0.52 16 47 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.38 9.68 7.90 -40.82 -0.32 9.36 16 49 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 50 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 51 H 0.08 1.00 8.10 -51.93 -0.42 0.58 16 LS Contribution 414.25 15.07 6.24 6.24 Total: -1.00 -32.16 414.25 -10.45 -42.61 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -8.79 Total: 10.21 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -2.66 Total: -7.36 kcal Atomic # 7 Polarization: -61.19 SS G_CDS: -0.29 Total: -61.48 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.08 Total: -6.95 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.16 -10.45 -42.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691785966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.496 kcal (2) G-P(sol) polarization free energy of solvation -32.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds