Wall clock time and date at job start Tue Mar 31 2020 18:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50699 * 109.47329 * 2 1 4 4 N 1.30498 * 125.64955 * 270.17683 * 3 2 1 5 5 C 1.34138 * 109.25392 * 180.28882 * 4 3 2 6 6 C 1.34671 * 108.01584 * 359.72689 * 5 4 3 7 7 N 1.35043 * 125.64680 * 89.99517 * 3 2 1 8 8 C 1.46495 * 126.39830 * 359.97438 * 7 3 2 9 9 H 1.08998 * 109.47543 * 359.70910 * 8 7 3 10 10 C 1.53003 * 109.46924 * 239.70873 * 8 7 3 11 11 C 1.53008 * 109.47135 * 119.71022 * 8 7 3 12 12 C 1.50700 * 109.47105 * 184.99647 * 11 8 7 13 13 O 1.21280 * 120.00086 * 0.02562 * 12 11 8 14 14 N 1.34772 * 120.00093 * 179.97438 * 12 11 8 15 15 C 1.46504 * 120.00276 * 180.02562 * 14 12 11 16 16 C 1.52998 * 109.46908 * 179.97438 * 15 14 12 17 17 H 1.08994 * 112.85258 * 316.19076 * 16 15 14 18 18 C 1.53777 * 113.68937 * 87.46603 * 16 15 14 19 19 C 1.53785 * 87.08241 * 139.98701 * 18 16 15 20 20 H 1.09002 * 113.61570 * 220.01842 * 19 18 16 21 21 N 1.46500 * 113.68813 * 89.12417 * 19 18 16 22 22 C 1.36936 * 119.99618 * 105.94148 * 21 19 18 23 23 H 1.07990 * 120.00427 * 359.97438 * 22 21 19 24 24 C 1.38824 * 119.99622 * 179.97438 * 22 21 19 25 25 N 1.31617 * 120.00063 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 119.99662 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47100 * 90.00073 * 26 24 22 28 28 H 1.48504 * 109.47148 * 209.99685 * 26 24 22 29 29 H 1.48493 * 109.47533 * 329.99863 * 26 24 22 30 30 C 1.53781 * 87.08241 * 334.56547 * 19 18 16 31 31 H 1.09001 * 109.46953 * 300.00194 * 1 2 3 32 32 H 1.09003 * 109.46819 * 59.99841 * 1 2 3 33 33 H 1.08997 * 109.47096 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46953 * 239.99806 * 2 1 3 35 35 H 1.09003 * 109.46819 * 120.00159 * 2 1 3 36 36 H 1.07991 * 125.98519 * 179.71964 * 5 4 3 37 37 H 1.08001 * 126.58433 * 180.02562 * 6 5 4 38 38 H 1.08991 * 109.47316 * 60.00111 * 10 8 7 39 39 H 1.09000 * 109.46997 * 180.02562 * 10 8 7 40 40 H 1.08997 * 109.47152 * 299.99569 * 10 8 7 41 41 H 1.08997 * 109.46947 * 65.00016 * 11 8 7 42 42 H 1.08996 * 109.47137 * 305.00057 * 11 8 7 43 43 H 0.97005 * 119.99889 * 359.97438 * 14 12 11 44 44 H 1.08993 * 109.46882 * 59.99609 * 15 14 12 45 45 H 1.09002 * 109.46663 * 300.00151 * 15 14 12 46 46 H 1.08999 * 113.61947 * 25.44127 * 18 16 15 47 47 H 1.08997 * 113.61348 * 254.53341 * 18 16 15 48 48 H 0.96998 * 120.00149 * 285.93056 * 21 19 18 49 49 H 0.96996 * 120.00147 * 180.02562 * 25 24 22 50 50 H 1.09000 * 113.61578 * 139.97748 * 30 19 18 51 51 H 1.09001 * 113.61682 * 270.80327 * 30 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2829 2.1389 -1.0604 5 6 2.7190 3.3496 -0.6818 6 6 2.7337 3.3848 0.6644 7 7 2.2947 2.1628 1.0974 8 6 2.1435 1.7373 2.4910 9 1 1.7750 0.7119 2.5199 10 6 1.1476 2.6573 3.2000 11 6 3.4989 1.8122 3.1970 12 6 3.3694 1.2593 4.5929 13 8 2.2987 0.8456 4.9844 14 7 4.4437 1.2236 5.4060 15 6 4.3179 0.6856 6.7629 16 6 5.6735 0.7595 7.4683 17 1 6.4994 0.4402 6.8328 18 6 5.9268 2.0981 8.1815 19 6 6.5583 1.2815 9.3214 20 1 6.3065 1.6516 10.3152 21 7 7.9936 1.0435 9.1497 22 6 8.8978 1.7309 9.9146 23 1 8.5530 2.4486 10.6441 24 6 10.2579 1.5050 9.7523 25 7 10.6782 0.6299 8.8636 26 14 11.4914 2.4431 10.7953 27 1 11.7663 1.6825 12.0408 28 1 12.7538 2.6168 10.0327 29 1 10.9349 3.7755 11.1416 30 6 5.6797 0.1065 8.8607 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0276 -0.0005 34 1 1.8933 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0077 4.1548 -1.3410 37 1 3.0338 4.2175 1.2832 38 1 0.1822 2.6040 2.6971 39 1 1.0355 2.3410 4.2370 40 1 1.5162 3.6827 3.1712 41 1 3.8259 2.8508 3.2465 42 1 4.2311 1.2269 2.6409 43 1 5.3004 1.5534 5.0925 44 1 3.9907 -0.3529 6.7130 45 1 3.5859 1.2709 7.3193 46 1 5.0137 2.6183 8.4711 47 1 6.6355 2.7426 7.6616 48 1 8.3034 0.3990 8.4943 49 1 11.6285 0.4718 8.7505 50 1 6.1889 -0.8568 8.8890 51 1 4.6995 0.0813 9.3369 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691785966.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:48 Heat of formation + Delta-G solvation = 21.787832 kcal Electronic energy + Delta-G solvation = -28200.558749 eV Core-core repulsion = 24328.601563 eV Total energy + Delta-G solvation = -3871.957186 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.15963 -41.02968 -39.93521 -36.81460 -35.92240 -34.95746 -34.70848 -32.24791 -31.78436 -29.78054 -29.53521 -27.91739 -26.43451 -25.67338 -24.83263 -24.11017 -23.04600 -22.14429 -21.31990 -20.23244 -19.80088 -19.32362 -18.48500 -17.57933 -17.11019 -16.80730 -16.65548 -16.30698 -15.86438 -15.79504 -15.60009 -15.25028 -15.05673 -14.89966 -14.68267 -14.40012 -14.38748 -14.14036 -13.95847 -13.75180 -13.30923 -13.20506 -13.00516 -12.91020 -12.82931 -12.61916 -12.53376 -12.51647 -12.22112 -12.15617 -12.05980 -11.97306 -11.55963 -11.47940 -11.10571 -10.94794 -10.87149 -10.73944 -10.56220 -10.04817 -9.28918 -8.99855 -7.96094 -5.23991 1.10042 1.47987 1.48758 1.56351 1.57159 1.65171 2.18834 2.31987 2.55291 3.36771 3.39044 3.48769 3.63667 3.70058 3.74871 3.80450 3.87160 3.95945 4.08794 4.16688 4.23507 4.33198 4.35113 4.39361 4.42317 4.47946 4.49944 4.67161 4.69713 4.73537 4.77031 4.81637 4.86467 4.93740 4.98231 5.00660 5.07725 5.11440 5.16164 5.27527 5.30254 5.36275 5.42782 5.49470 5.56192 5.67496 5.86742 6.25796 6.27833 6.50452 7.17148 7.18416 7.32961 8.10640 8.32367 9.27058 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.018784 B = 0.001839 C = 0.001759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.272837 B =15223.772221 C =15915.826726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.042 4.042 3 C 0.196 3.804 4 N -0.529 5.529 5 C -0.055 4.055 6 C -0.049 4.049 7 N -0.446 5.446 8 C 0.150 3.850 9 H 0.107 0.893 10 C -0.158 4.158 11 C -0.145 4.145 12 C 0.520 3.480 13 O -0.571 6.571 14 N -0.717 5.717 15 C 0.141 3.859 16 C -0.102 4.102 17 H 0.080 0.920 18 C -0.152 4.152 19 C 0.141 3.859 20 H 0.057 0.943 21 N -0.720 5.720 22 C -0.241 4.241 23 H 0.076 0.924 24 C -0.075 4.075 25 N -0.968 5.968 26 Si 0.971 3.029 27 H -0.289 1.289 28 H -0.297 1.297 29 H -0.269 1.269 30 C -0.135 4.135 31 H 0.049 0.951 32 H 0.050 0.950 33 H 0.083 0.917 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.181 0.819 37 H 0.199 0.801 38 H 0.058 0.942 39 H 0.085 0.915 40 H 0.070 0.930 41 H 0.122 0.878 42 H 0.110 0.890 43 H 0.412 0.588 44 H 0.064 0.936 45 H 0.070 0.930 46 H 0.092 0.908 47 H 0.047 0.953 48 H 0.374 0.626 49 H 0.251 0.749 50 H 0.056 0.944 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.877 2.594 -15.072 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.081 4.081 3 C -0.066 4.066 4 N -0.249 5.249 5 C -0.202 4.202 6 C -0.182 4.182 7 N -0.129 5.129 8 C 0.047 3.953 9 H 0.125 0.875 10 C -0.216 4.216 11 C -0.185 4.185 12 C 0.306 3.694 13 O -0.451 6.451 14 N -0.368 5.368 15 C 0.017 3.983 16 C -0.120 4.120 17 H 0.098 0.902 18 C -0.192 4.192 19 C 0.031 3.969 20 H 0.075 0.925 21 N -0.358 5.358 22 C -0.373 4.373 23 H 0.094 0.906 24 C -0.268 4.268 25 N -0.619 5.619 26 Si 0.801 3.199 27 H -0.216 1.216 28 H -0.223 1.223 29 H -0.194 1.194 30 C -0.174 4.174 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.102 0.898 34 H 0.114 0.886 35 H 0.108 0.892 36 H 0.198 0.802 37 H 0.216 0.784 38 H 0.078 0.922 39 H 0.103 0.897 40 H 0.088 0.912 41 H 0.140 0.860 42 H 0.129 0.871 43 H 0.248 0.752 44 H 0.082 0.918 45 H 0.089 0.911 46 H 0.110 0.890 47 H 0.066 0.934 48 H 0.206 0.794 49 H 0.059 0.941 50 H 0.075 0.925 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -21.657 2.134 -15.294 26.599 hybrid contribution 1.799 0.696 0.848 2.107 sum -19.859 2.830 -14.446 24.720 Atomic orbital electron populations 1.21696 0.93314 1.03228 1.01673 1.20091 0.96971 0.86407 1.04620 1.23689 1.04066 0.97430 0.81436 1.70209 1.19577 1.05495 1.29608 1.22648 1.07215 0.96382 0.93971 1.23045 1.07984 0.90561 0.96627 1.45659 1.48371 1.11815 1.07069 1.21138 0.95717 1.01380 0.77029 0.87509 1.22189 0.98184 0.99269 1.01961 1.21962 0.98599 1.05514 0.92445 1.20526 0.83551 0.78031 0.87268 1.90687 1.28097 1.49208 1.77148 1.46023 1.12852 1.63439 1.14525 1.21291 0.96488 0.98897 0.81577 1.22479 0.96164 0.97856 0.95547 0.90163 1.23694 1.00472 0.96022 0.99055 1.21409 0.83160 0.95828 0.96509 0.92459 1.42293 1.00458 1.48228 1.44832 1.19659 0.87804 1.16168 1.13687 0.90592 1.25537 0.98888 1.01153 1.01192 1.69800 1.13975 1.39196 1.38929 0.85168 0.78460 0.78533 0.77768 1.21578 1.22340 1.19434 1.23338 1.00660 0.97877 0.95516 0.93153 0.93077 0.89818 0.88607 0.89236 0.80212 0.78445 0.92249 0.89660 0.91151 0.86005 0.87146 0.75235 0.91765 0.91142 0.88955 0.93383 0.79365 0.94050 0.92526 0.87579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.90 71.98 0.71 -1.07 16 2 C -0.04 -0.60 6.08 29.85 0.18 -0.42 16 3 C 0.20 3.84 7.16 138.13 0.99 4.83 16 4 N -0.53 -12.61 11.25 -188.13 -2.12 -14.72 16 5 C -0.06 -1.07 11.87 83.52 0.99 -0.08 16 6 C -0.05 -0.76 10.70 83.09 0.89 0.13 16 7 N -0.45 -7.22 2.61 -491.90 -1.28 -8.50 16 8 C 0.15 2.10 2.64 45.00 0.12 2.22 16 9 H 0.11 1.60 6.49 -2.39 -0.02 1.59 16 10 C -0.16 -2.22 8.99 71.98 0.65 -1.58 16 11 C -0.14 -1.76 5.18 29.85 0.15 -1.61 16 12 C 0.52 9.28 7.55 87.66 0.66 9.94 16 13 O -0.57 -13.70 13.97 -3.03 -0.04 -13.74 16 14 N -0.72 -12.70 5.56 -463.07 -2.57 -15.27 16 15 C 0.14 2.94 5.51 86.38 0.48 3.42 16 16 C -0.10 -2.58 3.64 -10.27 -0.04 -2.62 16 17 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 18 C -0.15 -4.41 7.44 31.12 0.23 -4.17 16 19 C 0.14 5.08 4.55 45.52 0.21 5.29 16 20 H 0.06 2.09 8.11 -2.39 -0.02 2.07 16 21 N -0.72 -34.38 5.31 -320.44 -1.70 -36.08 16 22 C -0.24 -12.93 9.97 84.04 0.84 -12.10 16 23 H 0.08 3.92 7.83 -2.92 -0.02 3.89 16 24 C -0.08 -4.21 5.50 84.87 0.47 -3.74 16 25 N -0.97 -57.59 13.06 21.66 0.28 -57.30 16 26 Si 0.97 44.95 29.55 68.60 2.03 46.98 16 27 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 28 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 30 C -0.13 -3.79 7.38 31.12 0.23 -3.56 16 31 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.09 1.05 7.09 -2.39 -0.02 1.03 16 36 H 0.18 2.71 8.06 -2.92 -0.02 2.68 16 37 H 0.20 1.77 8.06 -2.91 -0.02 1.75 16 38 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.08 1.48 5.95 -2.39 -0.01 1.47 16 40 H 0.07 0.83 7.95 -2.39 -0.02 0.81 16 41 H 0.12 1.06 8.09 -2.39 -0.02 1.04 16 42 H 0.11 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.41 6.16 8.47 -92.70 -0.79 5.38 16 44 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 45 H 0.07 1.48 7.85 -2.39 -0.02 1.46 16 46 H 0.09 2.25 7.90 -2.39 -0.02 2.23 16 47 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 48 H 0.37 19.17 7.90 -92.71 -0.73 18.44 16 49 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 50 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 51 H 0.11 2.41 8.10 -2.39 -0.02 2.39 16 Total: -1.00 -69.84 414.25 1.76 -68.08 By element: Atomic # 1 Polarization: 36.28 SS G_CDS: -0.59 Total: 35.69 kcal Atomic # 6 Polarization: -12.88 SS G_CDS: 7.76 Total: -5.13 kcal Atomic # 7 Polarization: -124.49 SS G_CDS: -7.39 Total: -131.88 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -0.04 Total: -13.74 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -69.84 1.76 -68.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691785966.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.870 kcal (2) G-P(sol) polarization free energy of solvation -69.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds