Wall clock time and date at job start Tue Mar 31 2020 19:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47363 * 2 1 4 4 C 1.50698 * 109.47156 * 120.00014 * 2 1 3 5 5 O 1.21284 * 120.00335 * 245.54594 * 4 2 1 6 6 N 1.34783 * 120.00087 * 65.54819 * 4 2 1 7 7 C 1.46924 * 120.62612 * 355.90316 * 6 4 2 8 8 C 1.53624 * 108.54301 * 126.37008 * 7 6 4 9 9 C 1.53046 * 109.23956 * 54.85597 * 8 7 6 10 10 C 1.52995 * 109.45787 * 178.48997 * 9 8 7 11 11 C 1.52998 * 109.47454 * 295.06714 * 10 9 8 12 12 N 1.46500 * 109.47609 * 179.97438 * 11 10 9 13 13 C 1.36938 * 120.00309 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99709 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31613 * 120.00414 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99806 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46891 * 60.00185 * 17 15 13 19 19 H 1.48498 * 109.47030 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47363 * 300.00246 * 17 15 13 21 21 C 1.53040 * 109.53809 * 298.50888 * 9 8 7 22 22 C 1.46925 * 120.63367 * 176.18715 * 6 4 2 23 23 C 1.50701 * 109.47490 * 239.99927 * 2 1 3 24 24 C 1.34660 * 126.59596 * 231.67446 * 23 2 1 25 25 N 1.34129 * 108.02301 * 179.97438 * 24 23 2 26 26 C 1.30492 * 109.25532 * 0.02562 * 25 24 23 27 27 N 1.35052 * 108.70139 * 359.76432 * 26 25 24 28 28 H 0.97001 * 126.39970 * 180.27134 * 27 26 25 29 29 H 1.08999 * 109.47049 * 304.69069 * 1 2 3 30 30 H 1.09000 * 109.47009 * 64.68629 * 1 2 3 31 31 H 1.08999 * 109.46861 * 184.68974 * 1 2 3 32 32 H 1.08996 * 109.47010 * 172.40102 * 3 2 1 33 33 H 1.08992 * 109.47193 * 292.40834 * 3 2 1 34 34 H 1.09006 * 109.46900 * 52.40643 * 3 2 1 35 35 H 1.09005 * 109.58700 * 246.20451 * 7 6 4 36 36 H 1.09000 * 109.58848 * 6.62814 * 7 6 4 37 37 H 1.08995 * 109.63589 * 294.86152 * 8 7 6 38 38 H 1.09003 * 109.45610 * 174.73732 * 8 7 6 39 39 H 1.09003 * 109.44998 * 58.52737 * 9 8 7 40 40 H 1.08997 * 109.47178 * 55.06970 * 10 9 8 41 41 H 1.09000 * 109.47407 * 175.06693 * 10 9 8 42 42 H 1.09005 * 109.47076 * 300.00588 * 11 10 9 43 43 H 1.09006 * 109.47236 * 59.99726 * 11 10 9 44 44 H 0.97000 * 119.99705 * 0.02562 * 12 11 10 45 45 H 0.97000 * 120.00591 * 180.02562 * 16 15 13 46 46 H 1.08997 * 109.49748 * 301.42151 * 21 9 8 47 47 H 1.08993 * 109.52408 * 181.33168 * 21 9 8 48 48 H 1.08999 * 109.58136 * 353.36875 * 22 6 4 49 49 H 1.08993 * 109.58667 * 113.65428 * 22 6 4 50 50 H 1.08004 * 125.98906 * 359.96098 * 24 23 2 51 51 H 1.08006 * 125.65276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6444 -0.0958 2.0782 6 7 1.8014 -2.0288 1.3889 7 6 0.9856 -2.7681 0.4160 8 6 1.7897 -3.9820 -0.0738 9 6 2.2347 -4.8121 1.1326 10 6 3.0040 -6.0428 0.6485 11 6 2.0642 -6.9519 -0.1460 12 7 2.8009 -8.1300 -0.6100 13 6 2.1616 -9.0911 -1.3468 14 1 1.1144 -8.9803 -1.5861 15 6 2.8596 -10.2076 -1.7860 16 7 4.1358 -10.3429 -1.4939 17 14 1.9873 -11.5190 -2.7904 18 1 1.4556 -10.9145 -4.0382 19 1 2.9467 -12.5991 -3.1340 20 1 0.8664 -12.0854 -1.9980 21 6 3.1399 -3.9657 2.0305 22 6 2.3556 -2.7527 2.5411 23 6 2.0324 -0.7104 -1.2304 24 6 2.9321 -1.7116 -1.2682 25 7 3.1058 -2.0653 -2.5504 26 6 2.3483 -1.3209 -3.3085 27 7 1.6581 -0.4652 -2.5241 28 1 1.0178 0.1998 -2.8218 29 1 -0.3633 0.5849 0.8450 30 1 -0.3633 0.4394 -0.9290 31 1 -0.3633 -1.0242 0.0840 32 1 3.1215 1.4455 0.1359 33 1 1.7918 1.9156 -0.9500 34 1 1.5700 1.9941 0.8143 35 1 0.0645 -3.1044 0.8921 36 1 0.7478 -2.1209 -0.4282 37 1 2.6665 -3.6423 -0.6250 38 1 1.1646 -4.5928 -0.7251 39 1 1.3583 -5.1306 1.6971 40 1 3.8296 -5.7275 0.0106 41 1 3.3960 -6.5873 1.5075 42 1 1.2384 -7.2672 0.4920 43 1 1.6721 -6.4074 -1.0050 44 1 3.7415 -8.2297 -0.3948 45 1 4.6237 -11.1229 -1.8011 46 1 4.0039 -3.6260 1.4594 47 1 3.4757 -4.5643 2.8771 48 1 3.0221 -2.0953 3.0994 49 1 1.5442 -3.0856 3.1882 50 1 3.4273 -2.1524 -0.4156 51 1 2.2809 -1.3820 -4.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698700794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:13 Heat of formation + Delta-G solvation = 40.417431 kcal Electronic energy + Delta-G solvation = -30524.205025 eV Core-core repulsion = 26653.055678 eV Total energy + Delta-G solvation = -3871.149346 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.76553 -40.49141 -38.14101 -35.77865 -35.26274 -33.45862 -32.69320 -31.26604 -30.88460 -29.12182 -28.40791 -27.71943 -25.47689 -23.91365 -23.34475 -22.76672 -21.85715 -21.41149 -20.66156 -19.85736 -19.56498 -18.25474 -16.97942 -16.72244 -16.11907 -15.48257 -15.42854 -14.92999 -14.70654 -14.59266 -14.41177 -14.15412 -13.96818 -13.79580 -13.53561 -13.34260 -13.26838 -12.92025 -12.81191 -12.68128 -12.58875 -12.31448 -12.16486 -11.99469 -11.63230 -11.24375 -11.16727 -11.06245 -10.90774 -10.70909 -10.53264 -10.31096 -10.17234 -10.12868 -10.05874 -9.86130 -9.80314 -9.59649 -8.79056 -8.74615 -8.52592 -6.82819 -5.68967 -2.96993 1.72257 2.24649 2.74025 2.90951 2.99324 3.48255 3.51995 3.53578 4.00430 4.15847 4.44960 4.54473 4.62229 4.63931 4.74812 4.86924 4.91335 4.99245 5.05229 5.08423 5.20012 5.24388 5.31473 5.33395 5.35297 5.45066 5.45988 5.59807 5.62768 5.68149 5.76925 5.79131 5.84258 5.88308 5.91738 5.96299 6.09276 6.20650 6.29948 6.43651 6.45090 6.47805 6.52010 6.59062 6.97515 7.02946 7.08547 7.19813 7.75469 7.86120 7.92361 8.50430 9.60857 10.21327 10.55612 11.54171 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.002847 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.515044 B = 9831.772867 C =10820.476929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.003 4.003 3 C -0.125 4.125 4 C 0.533 3.467 5 O -0.537 6.537 6 N -0.601 5.601 7 C 0.094 3.906 8 C -0.145 4.145 9 C -0.080 4.080 10 C -0.120 4.120 11 C 0.154 3.846 12 N -0.734 5.734 13 C -0.237 4.237 14 H 0.068 0.932 15 C -0.016 4.016 16 N -0.935 5.935 17 Si 0.906 3.094 18 H -0.286 1.286 19 H -0.291 1.291 20 H -0.287 1.287 21 C -0.129 4.129 22 C 0.111 3.889 23 C -0.030 4.030 24 C -0.003 4.003 25 N -0.481 5.481 26 C 0.191 3.809 27 N -0.564 5.564 28 H 0.417 0.583 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.057 0.943 34 H 0.069 0.931 35 H 0.066 0.934 36 H 0.096 0.904 37 H 0.091 0.909 38 H 0.079 0.921 39 H 0.069 0.931 40 H 0.062 0.938 41 H 0.061 0.939 42 H 0.013 0.987 43 H 0.019 0.981 44 H 0.383 0.617 45 H 0.255 0.745 46 H 0.067 0.933 47 H 0.077 0.923 48 H 0.090 0.910 49 H 0.068 0.932 50 H 0.172 0.828 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.633 26.836 2.635 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.008 4.008 3 C -0.183 4.183 4 C 0.319 3.681 5 O -0.413 6.413 6 N -0.334 5.334 7 C -0.028 4.028 8 C -0.182 4.182 9 C -0.100 4.100 10 C -0.158 4.158 11 C 0.027 3.973 12 N -0.378 5.378 13 C -0.369 4.369 14 H 0.086 0.914 15 C -0.211 4.211 16 N -0.583 5.583 17 Si 0.737 3.263 18 H -0.213 1.213 19 H -0.217 1.217 20 H -0.214 1.214 21 C -0.167 4.167 22 C -0.011 4.011 23 C -0.145 4.145 24 C -0.152 4.152 25 N -0.200 5.200 26 C -0.093 4.093 27 N -0.168 5.168 28 H 0.255 0.745 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.076 0.924 34 H 0.088 0.912 35 H 0.085 0.915 36 H 0.114 0.886 37 H 0.109 0.891 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.031 0.969 43 H 0.037 0.963 44 H 0.217 0.783 45 H 0.065 0.935 46 H 0.085 0.915 47 H 0.095 0.905 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.189 0.811 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -7.860 26.394 2.740 27.675 hybrid contribution -1.082 -0.063 -0.549 1.215 sum -8.942 26.332 2.192 27.895 Atomic orbital electron populations 1.22170 0.91859 1.03973 1.03113 1.19175 0.96907 0.95948 0.88745 1.21691 1.02774 0.92010 1.01789 1.20018 0.79230 0.81801 0.87015 1.90695 1.41179 1.65535 1.43933 1.48106 1.51538 1.07868 1.25893 1.22362 0.93577 0.94636 0.92244 1.22455 1.02024 0.95409 0.98355 1.21070 0.98304 0.94908 0.95675 1.21744 0.98930 0.94980 1.00151 1.20676 0.93651 0.88076 0.94916 1.42377 1.10750 1.20635 1.64024 1.19188 0.94125 0.98549 1.25004 0.91377 1.24732 0.95934 0.98781 1.01681 1.69648 1.07600 1.30164 1.50929 0.86276 0.78300 0.81546 0.80128 1.21311 1.21702 1.21354 1.21995 0.98629 0.95875 1.00246 1.21678 0.98153 0.93810 0.87487 1.20556 1.05234 1.03475 0.85204 1.22340 1.00272 0.97143 0.95419 1.70425 1.22433 1.25105 1.01991 1.25093 0.94491 0.91016 0.98692 1.43146 1.35817 1.31550 1.06243 0.74508 0.90979 0.91730 0.90553 0.91226 0.92428 0.91195 0.91534 0.88643 0.89095 0.90203 0.91294 0.91876 0.92042 0.96874 0.96301 0.78348 0.93523 0.91460 0.90461 0.89126 0.91417 0.81061 0.77382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.13 37.16 0.30 -0.64 16 2 C 0.00 -0.03 0.73 -156.81 -0.11 -0.14 16 3 C -0.12 -0.99 7.83 37.16 0.29 -0.69 16 4 C 0.53 6.01 5.75 -10.98 -0.06 5.94 16 5 O -0.54 -7.68 15.36 5.55 0.09 -7.59 16 6 N -0.60 -6.27 2.20 -172.50 -0.38 -6.64 16 7 C 0.09 0.92 3.97 -3.49 -0.01 0.90 16 8 C -0.14 -1.76 4.56 -26.38 -0.12 -1.88 16 9 C -0.08 -1.01 2.15 -90.58 -0.19 -1.21 16 10 C -0.12 -1.98 4.80 -26.73 -0.13 -2.11 16 11 C 0.15 3.19 6.02 -4.04 -0.02 3.16 16 12 N -0.73 -19.41 5.60 -59.91 -0.34 -19.74 16 13 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 14 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 15 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 16 N -0.93 -29.08 13.06 55.49 0.72 -28.35 16 17 Si 0.91 22.89 29.55 -169.99 -5.02 17.87 16 18 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 19 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 21 C -0.13 -1.43 5.36 -26.61 -0.14 -1.57 16 22 C 0.11 1.15 6.42 -3.71 -0.02 1.13 16 23 C -0.03 -0.27 3.83 -81.60 -0.31 -0.58 16 24 C 0.00 -0.04 6.89 -17.81 -0.12 -0.16 16 25 N -0.48 -6.14 11.22 -14.66 -0.16 -6.31 16 26 C 0.19 1.63 13.04 -90.37 -1.18 0.45 16 27 N -0.56 -3.71 6.08 -10.30 -0.06 -3.77 16 28 H 0.42 1.33 8.80 -40.82 -0.36 0.97 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.27 7.92 -51.93 -0.41 -0.14 16 31 H 0.08 0.49 5.19 -51.93 -0.27 0.22 16 32 H 0.07 0.68 7.95 -51.93 -0.41 0.26 16 33 H 0.06 0.33 8.13 -51.93 -0.42 -0.09 16 34 H 0.07 0.54 8.13 -51.93 -0.42 0.11 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.87 3.11 -51.93 -0.16 0.71 16 37 H 0.09 1.24 4.51 -51.93 -0.23 1.01 16 38 H 0.08 1.07 6.50 -51.93 -0.34 0.74 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 43 H 0.02 0.40 6.53 -51.93 -0.34 0.06 16 44 H 0.38 10.65 7.67 -40.82 -0.31 10.34 16 45 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 48 H 0.09 1.01 7.03 -51.93 -0.36 0.65 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.17 2.26 5.60 -52.48 -0.29 1.96 16 51 H 0.21 1.04 8.06 -52.48 -0.42 0.62 16 LS Contribution 383.89 15.07 5.79 5.79 Total: -1.00 -35.58 383.89 -9.58 -45.16 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: -8.12 Total: 8.59 kcal Atomic # 6 Polarization: -2.89 SS G_CDS: -2.09 Total: -4.98 kcal Atomic # 7 Polarization: -64.60 SS G_CDS: -0.22 Total: -64.82 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: 0.09 Total: -7.59 kcal Atomic # 14 Polarization: 22.89 SS G_CDS: -5.02 Total: 17.87 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.58 -9.58 -45.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698700794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.573 kcal (2) G-P(sol) polarization free energy of solvation -35.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds