Wall clock time and date at job start Tue Mar 31 2020 19:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47363 * 2 1 4 4 C 1.50698 * 109.47156 * 120.00014 * 2 1 3 5 5 O 1.21284 * 120.00335 * 245.54594 * 4 2 1 6 6 N 1.34783 * 120.00087 * 65.54819 * 4 2 1 7 7 C 1.46924 * 120.62612 * 355.90316 * 6 4 2 8 8 C 1.53624 * 108.54301 * 126.37008 * 7 6 4 9 9 C 1.53046 * 109.23956 * 54.85597 * 8 7 6 10 10 C 1.52995 * 109.45787 * 178.48997 * 9 8 7 11 11 C 1.52998 * 109.47454 * 295.06714 * 10 9 8 12 12 N 1.46500 * 109.47609 * 179.97438 * 11 10 9 13 13 C 1.36938 * 120.00309 * 179.97438 * 12 11 10 14 14 H 1.07994 * 119.99709 * 0.02562 * 13 12 11 15 15 C 1.38808 * 119.99844 * 180.02562 * 13 12 11 16 16 N 1.31613 * 120.00414 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99806 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.46891 * 60.00185 * 17 15 13 19 19 H 1.48498 * 109.47030 * 179.97438 * 17 15 13 20 20 H 1.48496 * 109.47363 * 300.00246 * 17 15 13 21 21 C 1.53040 * 109.53809 * 298.50888 * 9 8 7 22 22 C 1.46925 * 120.63367 * 176.18715 * 6 4 2 23 23 C 1.50701 * 109.47490 * 239.99927 * 2 1 3 24 24 C 1.34660 * 126.59596 * 231.67446 * 23 2 1 25 25 N 1.34129 * 108.02301 * 179.97438 * 24 23 2 26 26 C 1.30492 * 109.25532 * 0.02562 * 25 24 23 27 27 N 1.35052 * 108.70139 * 359.76432 * 26 25 24 28 28 H 0.97001 * 126.39970 * 180.27134 * 27 26 25 29 29 H 1.08999 * 109.47049 * 304.69069 * 1 2 3 30 30 H 1.09000 * 109.47009 * 64.68629 * 1 2 3 31 31 H 1.08999 * 109.46861 * 184.68974 * 1 2 3 32 32 H 1.08996 * 109.47010 * 172.40102 * 3 2 1 33 33 H 1.08992 * 109.47193 * 292.40834 * 3 2 1 34 34 H 1.09006 * 109.46900 * 52.40643 * 3 2 1 35 35 H 1.09005 * 109.58700 * 246.20451 * 7 6 4 36 36 H 1.09000 * 109.58848 * 6.62814 * 7 6 4 37 37 H 1.08995 * 109.63589 * 294.86152 * 8 7 6 38 38 H 1.09003 * 109.45610 * 174.73732 * 8 7 6 39 39 H 1.09003 * 109.44998 * 58.52737 * 9 8 7 40 40 H 1.08997 * 109.47178 * 55.06970 * 10 9 8 41 41 H 1.09000 * 109.47407 * 175.06693 * 10 9 8 42 42 H 1.09005 * 109.47076 * 300.00588 * 11 10 9 43 43 H 1.09006 * 109.47236 * 59.99726 * 11 10 9 44 44 H 0.97000 * 119.99705 * 0.02562 * 12 11 10 45 45 H 0.97000 * 120.00591 * 180.02562 * 16 15 13 46 46 H 1.08997 * 109.49748 * 301.42151 * 21 9 8 47 47 H 1.08993 * 109.52408 * 181.33168 * 21 9 8 48 48 H 1.08999 * 109.58136 * 353.36875 * 22 6 4 49 49 H 1.08993 * 109.58667 * 113.65428 * 22 6 4 50 50 H 1.08004 * 125.98906 * 359.96098 * 24 23 2 51 51 H 1.08006 * 125.65276 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.6444 -0.0958 2.0782 6 7 1.8014 -2.0288 1.3889 7 6 0.9856 -2.7681 0.4160 8 6 1.7897 -3.9820 -0.0738 9 6 2.2347 -4.8121 1.1326 10 6 3.0040 -6.0428 0.6485 11 6 2.0642 -6.9519 -0.1460 12 7 2.8009 -8.1300 -0.6100 13 6 2.1616 -9.0911 -1.3468 14 1 1.1144 -8.9803 -1.5861 15 6 2.8596 -10.2076 -1.7860 16 7 4.1358 -10.3429 -1.4939 17 14 1.9873 -11.5190 -2.7904 18 1 1.4556 -10.9145 -4.0382 19 1 2.9467 -12.5991 -3.1340 20 1 0.8664 -12.0854 -1.9980 21 6 3.1399 -3.9657 2.0305 22 6 2.3556 -2.7527 2.5411 23 6 2.0324 -0.7104 -1.2304 24 6 2.9321 -1.7116 -1.2682 25 7 3.1058 -2.0653 -2.5504 26 6 2.3483 -1.3209 -3.3085 27 7 1.6581 -0.4652 -2.5241 28 1 1.0178 0.1998 -2.8218 29 1 -0.3633 0.5849 0.8450 30 1 -0.3633 0.4394 -0.9290 31 1 -0.3633 -1.0242 0.0840 32 1 3.1215 1.4455 0.1359 33 1 1.7918 1.9156 -0.9500 34 1 1.5700 1.9941 0.8143 35 1 0.0645 -3.1044 0.8921 36 1 0.7478 -2.1209 -0.4282 37 1 2.6665 -3.6423 -0.6250 38 1 1.1646 -4.5928 -0.7251 39 1 1.3583 -5.1306 1.6971 40 1 3.8296 -5.7275 0.0106 41 1 3.3960 -6.5873 1.5075 42 1 1.2384 -7.2672 0.4920 43 1 1.6721 -6.4074 -1.0050 44 1 3.7415 -8.2297 -0.3948 45 1 4.6237 -11.1229 -1.8011 46 1 4.0039 -3.6260 1.4594 47 1 3.4757 -4.5643 2.8771 48 1 3.0221 -2.0953 3.0994 49 1 1.5442 -3.0856 3.1882 50 1 3.4273 -2.1524 -0.4156 51 1 2.2809 -1.3820 -4.3847 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698700794.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:12 Heat of formation + Delta-G solvation = 17.389137 kcal Electronic energy + Delta-G solvation = -30525.203606 eV Core-core repulsion = 26653.055678 eV Total energy + Delta-G solvation = -3872.147928 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.49683 -41.34011 -39.18069 -36.91470 -36.50793 -34.97451 -33.44540 -32.93867 -31.94707 -29.98039 -29.77919 -28.28889 -26.84537 -25.24303 -24.35289 -23.96195 -22.90700 -22.24576 -21.90447 -20.81661 -20.35108 -19.19754 -18.94174 -17.58202 -16.92474 -16.67760 -16.31792 -16.18192 -15.98956 -15.49935 -15.38761 -15.32141 -15.22041 -14.96184 -14.70849 -14.50142 -14.29919 -14.04125 -13.90430 -13.62631 -13.26966 -13.10035 -13.07608 -12.95577 -12.79398 -12.66038 -12.50566 -12.30584 -12.27267 -12.12871 -12.11259 -11.91546 -11.59943 -11.34272 -11.18881 -10.93249 -10.87479 -10.86050 -10.66612 -9.65182 -9.26785 -8.98602 -7.94079 -5.23537 1.03172 1.41139 1.46695 1.50951 1.57080 1.94101 2.21948 2.27428 2.57009 3.26416 3.39073 3.54092 3.70113 3.77530 3.83119 3.87295 3.95476 4.02524 4.11937 4.22132 4.34148 4.40111 4.46665 4.51509 4.56120 4.57756 4.61609 4.63833 4.72868 4.76326 4.77355 4.83018 4.85724 4.89725 4.99030 5.05446 5.09552 5.14047 5.16936 5.22646 5.26751 5.32858 5.40710 5.49149 5.55787 5.61045 5.70168 6.28164 6.34471 6.58249 7.05797 7.15950 7.33372 8.10892 8.33701 9.29767 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.002847 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.515044 B = 9831.772867 C =10820.476929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.002 3.998 3 C -0.122 4.122 4 C 0.527 3.473 5 O -0.573 6.573 6 N -0.599 5.599 7 C 0.103 3.897 8 C -0.140 4.140 9 C -0.071 4.071 10 C -0.107 4.107 11 C 0.155 3.845 12 N -0.750 5.750 13 C -0.248 4.248 14 H 0.076 0.924 15 C -0.079 4.079 16 N -0.972 5.972 17 Si 0.977 3.023 18 H -0.276 1.276 19 H -0.295 1.295 20 H -0.276 1.276 21 C -0.121 4.121 22 C 0.113 3.887 23 C -0.015 4.015 24 C -0.031 4.031 25 N -0.536 5.536 26 C 0.200 3.800 27 N -0.543 5.543 28 H 0.438 0.562 29 H 0.077 0.923 30 H 0.092 0.908 31 H 0.074 0.926 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.085 0.915 36 H 0.106 0.894 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.081 0.919 40 H 0.046 0.954 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.020 0.980 44 H 0.371 0.629 45 H 0.252 0.748 46 H 0.051 0.949 47 H 0.086 0.914 48 H 0.081 0.919 49 H 0.086 0.914 50 H 0.148 0.852 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.513 28.299 1.798 30.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 C -0.180 4.180 4 C 0.315 3.685 5 O -0.453 6.453 6 N -0.331 5.331 7 C -0.019 4.019 8 C -0.178 4.178 9 C -0.090 4.090 10 C -0.145 4.145 11 C 0.029 3.971 12 N -0.392 5.392 13 C -0.380 4.380 14 H 0.094 0.906 15 C -0.270 4.270 16 N -0.623 5.623 17 Si 0.805 3.195 18 H -0.202 1.202 19 H -0.221 1.221 20 H -0.202 1.202 21 C -0.160 4.160 22 C -0.009 4.009 23 C -0.132 4.132 24 C -0.178 4.178 25 N -0.256 5.256 26 C -0.084 4.084 27 N -0.148 5.148 28 H 0.279 0.721 29 H 0.096 0.904 30 H 0.111 0.889 31 H 0.093 0.907 32 H 0.063 0.937 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.103 0.897 36 H 0.123 0.877 37 H 0.093 0.907 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.064 0.936 41 H 0.076 0.924 42 H 0.037 0.963 43 H 0.038 0.962 44 H 0.203 0.797 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.105 0.895 48 H 0.100 0.900 49 H 0.105 0.895 50 H 0.165 0.835 51 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -10.803 27.899 1.900 29.978 hybrid contribution -0.155 -0.471 -0.297 0.578 sum -10.957 27.427 1.602 29.579 Atomic orbital electron populations 1.22200 0.89424 1.04331 1.04926 1.19190 0.98671 0.95585 0.86862 1.21689 1.01126 0.91825 1.03380 1.20571 0.78536 0.81893 0.87529 1.90675 1.42804 1.66316 1.45476 1.48149 1.51264 1.07856 1.25804 1.22347 0.93362 0.93591 0.92577 1.22346 1.01551 0.96151 0.97704 1.20986 0.98363 0.93404 0.96220 1.21612 0.98022 0.95820 0.99076 1.20833 0.94102 0.86871 0.95303 1.42651 1.10558 1.21962 1.64069 1.19633 0.94592 0.99083 1.24668 0.90630 1.25634 0.96744 1.01276 1.03394 1.69823 1.09218 1.30772 1.52482 0.85166 0.77196 0.78401 0.78741 1.20232 1.22071 1.20156 1.21899 0.97923 0.96133 1.00002 1.21655 0.98516 0.93059 0.87689 1.20451 1.04129 1.02291 0.86297 1.22073 1.01942 0.98905 0.94909 1.70339 1.24870 1.27514 1.02828 1.25684 0.93067 0.89880 0.99804 1.43006 1.35535 1.31383 1.04916 0.72057 0.90447 0.88948 0.90680 0.93729 0.89759 0.90917 0.89704 0.87651 0.90701 0.91467 0.90037 0.93557 0.92355 0.96310 0.96184 0.79721 0.93976 0.92972 0.89517 0.90032 0.89547 0.83477 0.74078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 8.13 71.98 0.59 -0.77 16 2 C 0.00 0.02 0.73 -53.67 -0.04 -0.02 16 3 C -0.12 -1.73 7.83 71.98 0.56 -1.16 16 4 C 0.53 11.62 5.75 87.66 0.50 12.12 16 5 O -0.57 -16.60 15.36 -3.04 -0.05 -16.64 16 6 N -0.60 -12.05 2.20 -818.06 -1.80 -13.85 16 7 C 0.10 1.86 3.97 86.51 0.34 2.21 16 8 C -0.14 -3.38 4.56 30.82 0.14 -3.23 16 9 C -0.07 -1.76 2.15 -10.77 -0.02 -1.78 16 10 C -0.11 -3.62 4.80 30.59 0.15 -3.47 16 11 C 0.15 6.45 6.02 86.38 0.52 6.97 16 12 N -0.75 -40.41 5.60 -343.45 -1.92 -42.34 16 13 C -0.25 -14.44 9.99 84.03 0.84 -13.60 16 14 H 0.08 4.19 7.83 -2.91 -0.02 4.16 16 15 C -0.08 -4.67 5.50 84.86 0.47 -4.20 16 16 N -0.97 -61.64 13.06 21.65 0.28 -61.35 16 17 Si 0.98 47.13 29.55 68.60 2.03 49.15 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.29 -14.26 7.11 99.48 0.71 -13.55 16 20 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 21 C -0.12 -2.69 5.36 30.67 0.16 -2.53 16 22 C 0.11 2.27 6.42 86.36 0.55 2.83 16 23 C -0.01 -0.25 3.83 40.95 0.16 -0.09 16 24 C -0.03 -0.74 6.89 83.52 0.58 -0.16 16 25 N -0.54 -13.70 11.22 -200.31 -2.25 -15.95 16 26 C 0.20 3.04 13.04 180.26 2.35 5.39 16 27 N -0.54 -5.65 6.08 -186.49 -1.13 -6.78 16 28 H 0.44 0.98 8.80 -92.71 -0.82 0.17 16 29 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.09 0.33 7.92 -2.39 -0.02 0.31 16 31 H 0.07 0.72 5.19 -2.39 -0.01 0.70 16 32 H 0.04 0.86 7.95 -2.39 -0.02 0.84 16 33 H 0.08 0.71 8.13 -2.39 -0.02 0.69 16 34 H 0.07 0.99 8.13 -2.38 -0.02 0.97 16 35 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 36 H 0.11 1.72 3.11 -2.39 -0.01 1.71 16 37 H 0.07 2.13 4.51 -2.39 -0.01 2.12 16 38 H 0.07 1.79 6.50 -2.39 -0.02 1.77 16 39 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 40 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.02 0.77 8.14 -2.38 -0.02 0.76 16 43 H 0.02 0.85 6.53 -2.38 -0.02 0.83 16 44 H 0.37 21.36 7.67 -92.71 -0.71 20.65 16 45 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 48 H 0.08 1.84 7.03 -2.39 -0.02 1.82 16 49 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 50 H 0.15 4.16 5.60 -2.91 -0.02 4.14 16 51 H 0.24 1.70 8.06 -2.91 -0.02 1.68 16 Total: -1.00 -79.48 383.89 2.44 -77.04 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: -0.57 Total: 32.22 kcal Atomic # 6 Polarization: -9.36 SS G_CDS: 7.85 Total: -1.51 kcal Atomic # 7 Polarization: -133.45 SS G_CDS: -6.82 Total: -140.27 kcal Atomic # 8 Polarization: -16.60 SS G_CDS: -0.05 Total: -16.64 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.15 kcal Total: -79.48 2.44 -77.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698700794.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.430 kcal (2) G-P(sol) polarization free energy of solvation -79.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.041 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds