Wall clock time and date at job start Tue Mar 31 2020 20:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.50700 * 109.47214 * 239.99862 * 2 1 3 5 5 O 1.21273 * 120.00306 * 236.62694 * 4 2 1 6 6 N 1.34777 * 119.99740 * 56.63066 * 4 2 1 7 7 C 1.46501 * 120.00158 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47195 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.53040 * 109.46120 * 295.02982 * 9 8 7 11 11 C 1.53198 * 109.31102 * 178.59988 * 10 9 8 12 12 N 1.46925 * 108.76258 * 54.65443 * 11 10 9 13 13 C 1.36940 * 120.63013 * 126.40960 * 12 11 10 14 14 H 1.08001 * 119.99633 * 331.29652 * 13 12 11 15 15 C 1.38804 * 120.00196 * 151.29857 * 13 12 11 16 16 N 1.31613 * 120.00264 * 345.35984 * 15 13 12 17 17 Si 1.86811 * 119.99983 * 165.36218 * 15 13 12 18 18 H 1.48494 * 109.47142 * 59.99752 * 17 15 13 19 19 H 1.48498 * 109.46981 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46878 * 299.99947 * 17 15 13 21 21 C 1.46918 * 118.74116 * 306.37946 * 12 11 10 22 22 C 1.53044 * 109.46213 * 174.97106 * 9 8 7 23 23 C 1.50706 * 109.47173 * 120.00267 * 2 1 3 24 24 C 1.34665 * 126.59078 * 7.15091 * 23 2 1 25 25 N 1.34126 * 108.01945 * 179.87512 * 24 23 2 26 26 C 1.30492 * 109.25650 * 0.40258 * 25 24 23 27 27 N 1.35043 * 108.70301 * 359.75245 * 26 25 24 28 28 H 0.96996 * 126.40320 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46908 * 59.99843 * 1 2 3 31 31 H 1.08999 * 109.47232 * 299.99701 * 1 2 3 32 32 H 1.09004 * 109.47208 * 59.99955 * 3 2 1 33 33 H 1.09000 * 109.47586 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47014 * 300.00448 * 3 2 1 35 35 H 0.97008 * 120.00027 * 0.02562 * 6 4 2 36 36 H 1.08994 * 109.46877 * 300.00224 * 7 6 4 37 37 H 1.09001 * 109.46976 * 60.00109 * 7 6 4 38 38 H 1.08999 * 109.46881 * 300.00299 * 8 7 6 39 39 H 1.09001 * 109.46948 * 60.00240 * 8 7 6 40 40 H 1.09005 * 109.46088 * 55.00282 * 9 8 7 41 41 H 1.08997 * 109.49560 * 298.56047 * 10 9 8 42 42 H 1.08998 * 109.49913 * 58.66349 * 10 9 8 43 43 H 1.08999 * 109.59828 * 294.86587 * 11 10 9 44 44 H 1.08998 * 109.70174 * 174.50233 * 11 10 9 45 45 H 0.96998 * 120.00445 * 179.97438 * 16 15 13 46 46 H 1.09004 * 109.59302 * 293.82463 * 21 12 11 47 47 H 1.09007 * 109.70406 * 173.46852 * 21 12 11 48 48 H 1.09002 * 109.49339 * 301.34335 * 22 9 8 49 49 H 1.09006 * 109.49140 * 61.43606 * 22 9 8 50 50 H 1.07998 * 125.98795 * 0.03230 * 24 23 2 51 51 H 1.08000 * 125.64946 * 179.73214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7792 -1.6596 -1.1203 6 7 1.6517 -0.2909 -2.4534 7 6 2.1405 -0.9811 -3.6496 8 6 1.5618 -0.3109 -4.8974 9 6 2.0727 -1.0314 -6.1467 10 6 3.5885 -0.8508 -6.2553 11 6 4.1012 -1.6025 -7.4877 12 7 3.3531 -1.1439 -8.6661 13 6 4.0117 -0.6836 -9.7750 14 1 4.9818 -0.2198 -9.6732 15 6 3.4326 -0.8131 -11.0298 16 7 2.4062 -1.6189 -11.2010 17 14 4.1102 0.1564 -12.4758 18 1 5.5315 -0.2127 -12.6968 19 1 3.3217 -0.1566 -13.6946 20 1 4.0157 1.6096 -12.1852 21 6 1.8850 -1.1891 -8.6325 22 6 1.3971 -0.4423 -7.3872 23 6 2.0324 -0.7105 1.2305 24 6 1.2885 -1.3843 2.1283 25 7 2.1122 -1.8693 3.0691 26 6 3.3373 -1.5144 2.7930 27 7 3.3318 -0.7898 1.6535 28 1 4.1043 -0.3988 1.2163 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0546 0.4686 -2.5415 36 1 3.2287 -0.9287 -3.6801 37 1 1.8277 -2.0249 -3.6201 38 1 0.4735 -0.3638 -4.8665 39 1 1.8742 0.7329 -4.9271 40 1 1.8377 -2.0934 -6.0751 41 1 3.8225 0.2094 -6.3521 42 1 4.0674 -1.2494 -5.3610 43 1 3.9492 -2.6733 -7.3523 44 1 5.1630 -1.3990 -7.6270 45 1 2.0013 -1.7091 -12.0778 46 1 1.5521 -2.2262 -8.5905 47 1 1.4821 -0.7120 -9.5259 48 1 0.3161 -0.5501 -7.2984 49 1 1.6521 0.6140 -7.4731 50 1 0.2168 -1.5138 2.0950 51 1 4.2108 -1.7594 3.3790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698726085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:21 Heat of formation + Delta-G solvation = 19.765894 kcal Electronic energy + Delta-G solvation = -28882.826278 eV Core-core repulsion = 25010.781414 eV Total energy + Delta-G solvation = -3872.044864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.45319 -40.12111 -38.06309 -35.80337 -35.49140 -33.54009 -32.65184 -31.26671 -29.99766 -29.13690 -28.43696 -27.77743 -25.41259 -24.12069 -23.11266 -22.15701 -21.74723 -21.16811 -20.82059 -19.94319 -19.08626 -18.38009 -16.94938 -16.80379 -16.13945 -15.74005 -15.08587 -14.85737 -14.73215 -14.48405 -14.34387 -14.24390 -13.81771 -13.75608 -13.50320 -13.43284 -13.08988 -12.85837 -12.75025 -12.68462 -12.53461 -12.23185 -12.12587 -11.74176 -11.59344 -11.36258 -11.22218 -10.88663 -10.71128 -10.48706 -10.29817 -10.22281 -10.20054 -10.16739 -9.99211 -9.85088 -9.47796 -9.41257 -9.19000 -8.64261 -8.46353 -6.63705 -5.77377 -3.21487 1.74975 2.35906 2.83125 2.87030 3.08046 3.37615 3.43092 3.44115 4.01842 4.26503 4.36899 4.47766 4.49555 4.59089 4.89030 5.00094 5.02752 5.08096 5.10472 5.21003 5.26173 5.26956 5.38268 5.40763 5.44486 5.53534 5.58586 5.61507 5.72520 5.76813 5.95469 5.98700 6.00560 6.09460 6.20141 6.28990 6.37096 6.46212 6.54626 6.63465 6.71121 6.82911 6.86474 7.01878 7.10544 7.24983 7.40192 7.69345 7.79375 7.81835 7.95791 8.47374 9.23343 9.86468 10.43725 11.30734 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.001887 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.682960 B =14831.363018 C =15072.309669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.006 4.006 3 C -0.142 4.142 4 C 0.517 3.483 5 O -0.532 6.532 6 N -0.724 5.724 7 C 0.117 3.883 8 C -0.125 4.125 9 C -0.075 4.075 10 C -0.129 4.129 11 C 0.144 3.856 12 N -0.593 5.593 13 C -0.251 4.251 14 H 0.064 0.936 15 C 0.001 3.999 16 N -0.905 5.905 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.284 1.284 21 C 0.170 3.830 22 C -0.134 4.134 23 C 0.006 3.994 24 C -0.019 4.019 25 N -0.495 5.495 26 C 0.185 3.815 27 N -0.553 5.553 28 H 0.418 0.582 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.057 0.943 34 H 0.071 0.929 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.056 0.944 42 H 0.049 0.951 43 H 0.016 0.984 44 H 0.051 0.949 45 H 0.254 0.746 46 H 0.016 0.984 47 H 0.088 0.912 48 H 0.047 0.953 49 H 0.053 0.947 50 H 0.168 0.832 51 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.879 7.183 25.153 26.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.011 4.011 3 C -0.200 4.200 4 C 0.301 3.699 5 O -0.408 6.408 6 N -0.376 5.376 7 C -0.006 4.006 8 C -0.163 4.163 9 C -0.094 4.094 10 C -0.168 4.168 11 C 0.018 3.982 12 N -0.316 5.316 13 C -0.380 4.380 14 H 0.081 0.919 15 C -0.198 4.198 16 N -0.550 5.550 17 Si 0.733 3.267 18 H -0.209 1.209 19 H -0.216 1.216 20 H -0.211 1.211 21 C 0.044 3.956 22 C -0.173 4.173 23 C -0.111 4.111 24 C -0.167 4.167 25 N -0.214 5.214 26 C -0.099 4.099 27 N -0.154 5.154 28 H 0.256 0.744 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.076 0.924 34 H 0.090 0.910 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.064 0.936 46 H 0.034 0.966 47 H 0.106 0.894 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.185 0.815 51 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -3.677 5.940 25.743 26.675 hybrid contribution 0.733 1.391 -1.789 2.381 sum -2.944 7.331 23.955 25.224 Atomic orbital electron populations 1.21867 0.90638 1.03673 1.03531 1.19241 0.97870 0.95205 0.88778 1.21908 1.01399 0.92976 1.03679 1.20425 0.80958 0.84100 0.84385 1.90734 1.35790 1.27676 1.86620 1.46078 1.50630 1.35037 1.05834 1.21567 0.99653 0.96577 0.82826 1.21908 1.00412 1.00177 0.93761 1.20973 0.96009 0.99306 0.93106 1.22113 0.94887 1.01091 0.98728 1.20899 0.95335 0.94894 0.87087 1.44038 1.01092 1.73889 1.12550 1.19148 1.03038 1.31258 0.84600 0.91871 1.25074 0.99025 0.98312 0.97351 1.69994 1.25446 1.37063 1.22477 0.86356 0.78360 0.79968 0.81989 1.20908 1.21627 1.21084 1.20781 0.83568 0.96427 0.94797 1.22227 0.97832 1.00524 0.96751 1.20433 0.84525 1.07220 0.98931 1.22034 0.99721 1.01552 0.93393 1.70277 1.00326 1.23224 1.27566 1.24921 0.98163 0.97600 0.89168 1.43107 1.08642 1.42021 1.21619 0.74429 0.91145 0.91114 0.90494 0.90711 0.92404 0.90975 0.76651 0.91041 0.91469 0.91706 0.91600 0.91701 0.92479 0.93214 0.96612 0.93020 0.93607 0.96606 0.89380 0.93456 0.92801 0.81499 0.77672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.75 7.33 37.16 0.27 -0.48 16 2 C -0.01 -0.05 0.85 -156.81 -0.13 -0.18 16 3 C -0.14 -0.76 8.37 37.16 0.31 -0.44 16 4 C 0.52 5.46 6.47 -10.98 -0.07 5.39 16 5 O -0.53 -7.96 15.95 5.56 0.09 -7.87 16 6 N -0.72 -6.56 5.35 -60.29 -0.32 -6.88 16 7 C 0.12 1.32 5.43 -4.04 -0.02 1.30 16 8 C -0.12 -1.42 4.80 -26.73 -0.13 -1.55 16 9 C -0.07 -1.16 2.15 -90.58 -0.19 -1.35 16 10 C -0.13 -2.16 5.15 -26.61 -0.14 -2.29 16 11 C 0.14 3.03 6.52 -3.71 -0.02 3.00 16 12 N -0.59 -14.82 2.99 -172.32 -0.52 -15.34 16 13 C -0.25 -6.88 9.59 -15.06 -0.14 -7.03 16 14 H 0.06 1.70 7.87 -52.49 -0.41 1.29 16 15 C 0.00 0.02 4.97 -17.44 -0.09 -0.07 16 16 N -0.91 -26.25 11.09 55.49 0.62 -25.63 16 17 Si 0.90 21.64 29.58 -169.99 -5.03 16.61 16 18 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 20 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 21 C 0.17 4.00 5.28 -3.72 -0.02 3.98 16 22 C -0.13 -2.42 5.36 -26.61 -0.14 -2.56 16 23 C 0.01 0.06 4.94 -81.60 -0.40 -0.35 16 24 C -0.02 -0.20 10.88 -17.81 -0.19 -0.39 16 25 N -0.50 -5.81 11.25 -14.67 -0.17 -5.98 16 26 C 0.19 1.65 13.04 -90.38 -1.18 0.47 16 27 N -0.55 -4.68 6.02 -10.30 -0.06 -4.75 16 28 H 0.42 2.72 8.96 -40.82 -0.37 2.36 16 29 H 0.07 0.44 7.71 -51.93 -0.40 0.04 16 30 H 0.07 0.27 7.38 -51.93 -0.38 -0.11 16 31 H 0.08 0.32 8.12 -51.93 -0.42 -0.10 16 32 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.29 7.78 -51.93 -0.40 -0.11 16 35 H 0.40 2.50 7.34 -40.82 -0.30 2.20 16 36 H 0.07 0.91 6.53 -51.93 -0.34 0.57 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.74 6.50 -51.93 -0.34 0.40 16 43 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 1.07 7.93 -51.93 -0.41 0.66 16 45 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 46 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 47 H 0.09 2.33 6.03 -51.92 -0.31 2.02 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 50 H 0.17 1.44 7.28 -52.49 -0.38 1.05 16 51 H 0.21 1.02 8.06 -52.49 -0.42 0.60 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -34.78 400.07 -10.34 -45.12 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -8.68 Total: 1.23 kcal Atomic # 6 Polarization: -0.25 SS G_CDS: -2.30 Total: -2.55 kcal Atomic # 7 Polarization: -58.13 SS G_CDS: -0.45 Total: -58.58 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.03 Total: 16.61 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -34.78 -10.34 -45.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698726085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.886 kcal (2) G-P(sol) polarization free energy of solvation -34.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds