Wall clock time and date at job start Tue Mar 31 2020 20:00:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47246 * 2 1 4 4 C 1.50700 * 109.47214 * 239.99862 * 2 1 3 5 5 O 1.21273 * 120.00306 * 236.62694 * 4 2 1 6 6 N 1.34777 * 119.99740 * 56.63066 * 4 2 1 7 7 C 1.46501 * 120.00158 * 179.97438 * 6 4 2 8 8 C 1.53003 * 109.47195 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.47075 * 179.97438 * 8 7 6 10 10 C 1.53040 * 109.46120 * 295.02982 * 9 8 7 11 11 C 1.53198 * 109.31102 * 178.59988 * 10 9 8 12 12 N 1.46925 * 108.76258 * 54.65443 * 11 10 9 13 13 C 1.36940 * 120.63013 * 126.40960 * 12 11 10 14 14 H 1.08001 * 119.99633 * 331.29652 * 13 12 11 15 15 C 1.38804 * 120.00196 * 151.29857 * 13 12 11 16 16 N 1.31613 * 120.00264 * 345.35984 * 15 13 12 17 17 Si 1.86811 * 119.99983 * 165.36218 * 15 13 12 18 18 H 1.48494 * 109.47142 * 59.99752 * 17 15 13 19 19 H 1.48498 * 109.46981 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46878 * 299.99947 * 17 15 13 21 21 C 1.46918 * 118.74116 * 306.37946 * 12 11 10 22 22 C 1.53044 * 109.46213 * 174.97106 * 9 8 7 23 23 C 1.50706 * 109.47173 * 120.00267 * 2 1 3 24 24 C 1.34665 * 126.59078 * 7.15091 * 23 2 1 25 25 N 1.34126 * 108.01945 * 179.87512 * 24 23 2 26 26 C 1.30492 * 109.25650 * 0.40258 * 25 24 23 27 27 N 1.35043 * 108.70301 * 359.75245 * 26 25 24 28 28 H 0.96996 * 126.40320 * 180.02562 * 27 26 25 29 29 H 1.09002 * 109.47078 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.46908 * 59.99843 * 1 2 3 31 31 H 1.08999 * 109.47232 * 299.99701 * 1 2 3 32 32 H 1.09004 * 109.47208 * 59.99955 * 3 2 1 33 33 H 1.09000 * 109.47586 * 179.97438 * 3 2 1 34 34 H 1.09001 * 109.47014 * 300.00448 * 3 2 1 35 35 H 0.97008 * 120.00027 * 0.02562 * 6 4 2 36 36 H 1.08994 * 109.46877 * 300.00224 * 7 6 4 37 37 H 1.09001 * 109.46976 * 60.00109 * 7 6 4 38 38 H 1.08999 * 109.46881 * 300.00299 * 8 7 6 39 39 H 1.09001 * 109.46948 * 60.00240 * 8 7 6 40 40 H 1.09005 * 109.46088 * 55.00282 * 9 8 7 41 41 H 1.08997 * 109.49560 * 298.56047 * 10 9 8 42 42 H 1.08998 * 109.49913 * 58.66349 * 10 9 8 43 43 H 1.08999 * 109.59828 * 294.86587 * 11 10 9 44 44 H 1.08998 * 109.70174 * 174.50233 * 11 10 9 45 45 H 0.96998 * 120.00445 * 179.97438 * 16 15 13 46 46 H 1.09004 * 109.59302 * 293.82463 * 21 12 11 47 47 H 1.09007 * 109.70406 * 173.46852 * 21 12 11 48 48 H 1.09002 * 109.49339 * 301.34335 * 22 9 8 49 49 H 1.09006 * 109.49140 * 61.43606 * 22 9 8 50 50 H 1.07998 * 125.98795 * 0.03230 * 24 23 2 51 51 H 1.08000 * 125.64946 * 179.73214 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.7792 -1.6596 -1.1203 6 7 1.6517 -0.2909 -2.4534 7 6 2.1405 -0.9811 -3.6496 8 6 1.5618 -0.3109 -4.8974 9 6 2.0727 -1.0314 -6.1467 10 6 3.5885 -0.8508 -6.2553 11 6 4.1012 -1.6025 -7.4877 12 7 3.3531 -1.1439 -8.6661 13 6 4.0117 -0.6836 -9.7750 14 1 4.9818 -0.2198 -9.6732 15 6 3.4326 -0.8131 -11.0298 16 7 2.4062 -1.6189 -11.2010 17 14 4.1102 0.1564 -12.4758 18 1 5.5315 -0.2127 -12.6968 19 1 3.3217 -0.1566 -13.6946 20 1 4.0157 1.6096 -12.1852 21 6 1.8850 -1.1891 -8.6325 22 6 1.3971 -0.4423 -7.3872 23 6 2.0324 -0.7105 1.2305 24 6 1.2885 -1.3843 2.1283 25 7 2.1122 -1.8693 3.0691 26 6 3.3373 -1.5144 2.7930 27 7 3.3318 -0.7898 1.6535 28 1 4.1043 -0.3988 1.2163 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3634 0.5138 0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.0546 0.4686 -2.5415 36 1 3.2287 -0.9287 -3.6801 37 1 1.8277 -2.0249 -3.6201 38 1 0.4735 -0.3638 -4.8665 39 1 1.8742 0.7329 -4.9271 40 1 1.8377 -2.0934 -6.0751 41 1 3.8225 0.2094 -6.3521 42 1 4.0674 -1.2494 -5.3610 43 1 3.9492 -2.6733 -7.3523 44 1 5.1630 -1.3990 -7.6270 45 1 2.0013 -1.7091 -12.0778 46 1 1.5521 -2.2262 -8.5905 47 1 1.4821 -0.7120 -9.5259 48 1 0.3161 -0.5501 -7.2984 49 1 1.6521 0.6140 -7.4731 50 1 0.2168 -1.5138 2.0950 51 1 4.2108 -1.7594 3.3790 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698726085.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:00:19 Heat of formation + Delta-G solvation = -2.425793 kcal Electronic energy + Delta-G solvation = -28883.788582 eV Core-core repulsion = 25010.781414 eV Total energy + Delta-G solvation = -3873.007168 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.12551 -40.93850 -39.52918 -36.75353 -36.42776 -35.01665 -33.36567 -32.97893 -31.58476 -30.18300 -29.45397 -28.20583 -26.96670 -25.13918 -24.32967 -23.59108 -22.60224 -22.16256 -21.89809 -20.82590 -20.49835 -19.09322 -18.69990 -17.62825 -17.03007 -16.83226 -16.59242 -15.86604 -15.69120 -15.51653 -15.28939 -15.15609 -15.00552 -14.93186 -14.86543 -14.41275 -14.36504 -14.06957 -13.81669 -13.53371 -13.32021 -13.04264 -13.03369 -12.91329 -12.84755 -12.55737 -12.52783 -12.30017 -12.21214 -12.12884 -11.93434 -11.81334 -11.51503 -11.12037 -11.03133 -10.98526 -10.91631 -10.72649 -10.52535 -10.08447 -9.33451 -8.65502 -7.86350 -5.34032 1.07456 1.46130 1.48077 1.55174 1.57443 2.10161 2.26558 2.34335 2.50892 3.27617 3.44466 3.69176 3.74193 3.84744 3.87211 3.91975 3.94168 4.04938 4.15038 4.30825 4.43745 4.51147 4.58944 4.62228 4.65912 4.69102 4.70742 4.75386 4.78559 4.85400 4.90303 4.94155 5.03536 5.05096 5.11806 5.16873 5.18453 5.27028 5.36037 5.36661 5.41162 5.43793 5.48090 5.57086 5.67554 5.78107 5.82635 6.40412 6.49242 6.56103 7.13134 7.16078 7.21277 7.87811 8.39302 9.19059 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.031184 B = 0.001887 C = 0.001857 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.682960 B =14831.363018 C =15072.309669 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.002 3.998 3 C -0.140 4.140 4 C 0.515 3.485 5 O -0.581 6.581 6 N -0.710 5.710 7 C 0.124 3.876 8 C -0.107 4.107 9 C -0.071 4.071 10 C -0.116 4.116 11 C 0.137 3.863 12 N -0.612 5.612 13 C -0.263 4.263 14 H 0.064 0.936 15 C -0.054 4.054 16 N -0.937 5.937 17 Si 0.969 3.031 18 H -0.277 1.277 19 H -0.294 1.294 20 H -0.276 1.276 21 C 0.173 3.827 22 C -0.120 4.120 23 C 0.000 4.000 24 C -0.042 4.042 25 N -0.536 5.536 26 C 0.184 3.816 27 N -0.551 5.551 28 H 0.426 0.574 29 H 0.057 0.943 30 H 0.092 0.908 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.052 0.948 34 H 0.090 0.910 35 H 0.416 0.584 36 H 0.059 0.941 37 H 0.051 0.949 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.006 0.994 44 H 0.048 0.952 45 H 0.250 0.750 46 H -0.011 1.011 47 H 0.053 0.947 48 H 0.070 0.930 49 H 0.054 0.946 50 H 0.176 0.824 51 H 0.238 0.762 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.162 9.513 26.527 28.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.003 4.003 3 C -0.197 4.197 4 C 0.302 3.698 5 O -0.461 6.461 6 N -0.362 5.362 7 C 0.000 4.000 8 C -0.145 4.145 9 C -0.090 4.090 10 C -0.155 4.155 11 C 0.012 3.988 12 N -0.336 5.336 13 C -0.393 4.393 14 H 0.082 0.918 15 C -0.249 4.249 16 N -0.583 5.583 17 Si 0.797 3.203 18 H -0.203 1.203 19 H -0.220 1.220 20 H -0.202 1.202 21 C 0.047 3.953 22 C -0.159 4.159 23 C -0.117 4.117 24 C -0.190 4.190 25 N -0.256 5.256 26 C -0.100 4.100 27 N -0.152 5.152 28 H 0.266 0.734 29 H 0.076 0.924 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.254 0.746 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.024 0.976 44 H 0.066 0.934 45 H 0.059 0.941 46 H 0.007 0.993 47 H 0.072 0.928 48 H 0.089 0.911 49 H 0.072 0.928 50 H 0.194 0.806 51 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -3.970 8.315 27.136 28.657 hybrid contribution 0.870 0.582 -2.201 2.437 sum -3.100 8.897 24.935 26.655 Atomic orbital electron populations 1.21933 0.88935 1.03503 1.05353 1.19285 0.99072 0.95750 0.86191 1.21941 1.01179 0.91410 1.05181 1.20978 0.80020 0.83443 0.85388 1.90717 1.38093 1.29952 1.87328 1.45884 1.50369 1.35127 1.04791 1.21323 0.98927 0.96056 0.83700 1.21696 1.01487 1.00131 0.91191 1.20885 0.94892 0.99258 0.93968 1.21957 0.95951 1.00412 0.97138 1.21079 0.95114 0.94933 0.87713 1.44330 1.01864 1.74257 1.13101 1.19488 1.03211 1.30914 0.85710 0.91812 1.25858 0.99647 0.99457 0.99916 1.70167 1.26843 1.38648 1.22663 0.85315 0.77693 0.78781 0.78492 1.20278 1.21987 1.20175 1.20637 0.83103 0.95277 0.96250 1.22017 0.99299 0.99544 0.95044 1.20766 0.84720 1.06953 0.99285 1.22329 1.00469 1.02269 0.93935 1.70244 1.01679 1.24757 1.28879 1.25583 0.98456 0.96650 0.89288 1.43168 1.08827 1.41755 1.21498 0.73441 0.92350 0.88951 0.89063 0.89620 0.92860 0.89084 0.74595 0.92266 0.93034 0.89639 0.90055 0.92591 0.92331 0.90907 0.97609 0.93358 0.94126 0.99267 0.92842 0.91142 0.92757 0.80641 0.74549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 7.33 71.98 0.53 -0.60 16 2 C 0.00 0.02 0.85 -53.67 -0.05 -0.02 16 3 C -0.14 -1.05 8.37 71.98 0.60 -0.44 16 4 C 0.52 9.90 6.47 87.66 0.57 10.47 16 5 O -0.58 -16.97 15.95 -3.01 -0.05 -17.02 16 6 N -0.71 -10.69 5.35 -463.06 -2.48 -13.17 16 7 C 0.12 2.49 5.43 86.38 0.47 2.96 16 8 C -0.11 -2.06 4.80 30.59 0.15 -1.91 16 9 C -0.07 -2.04 2.15 -10.77 -0.02 -2.07 16 10 C -0.12 -3.68 5.15 30.67 0.16 -3.52 16 11 C 0.14 5.77 6.52 86.36 0.56 6.33 16 12 N -0.61 -31.08 2.99 -699.11 -2.09 -33.18 16 13 C -0.26 -14.64 9.59 84.03 0.81 -13.84 16 14 H 0.06 3.46 7.87 -2.91 -0.02 3.44 16 15 C -0.05 -3.03 4.97 84.86 0.42 -2.61 16 16 N -0.94 -55.96 11.09 21.65 0.24 -55.72 16 17 Si 0.97 44.98 29.58 68.60 2.03 47.01 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.77 16 19 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 C 0.17 8.32 5.28 86.36 0.46 8.77 16 22 C -0.12 -4.16 5.36 30.67 0.16 -4.00 16 23 C 0.00 0.00 4.94 40.95 0.20 0.21 16 24 C -0.04 -0.88 10.88 83.52 0.91 0.03 16 25 N -0.54 -12.46 11.25 -200.32 -2.25 -14.72 16 26 C 0.18 3.13 13.04 180.26 2.35 5.48 16 27 N -0.55 -8.77 6.02 -186.49 -1.12 -9.90 16 28 H 0.43 5.07 8.96 -92.71 -0.83 4.24 16 29 H 0.06 0.63 7.71 -2.39 -0.02 0.61 16 30 H 0.09 0.34 7.38 -2.39 -0.02 0.32 16 31 H 0.09 0.51 8.12 -2.39 -0.02 0.49 16 32 H 0.08 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.09 0.35 7.78 -2.39 -0.02 0.33 16 35 H 0.42 3.41 7.34 -92.70 -0.68 2.73 16 36 H 0.06 1.37 6.53 -2.39 -0.02 1.35 16 37 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 41 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 42 H 0.07 2.00 6.50 -2.39 -0.02 1.99 16 43 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 44 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 45 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 46 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 47 H 0.05 2.92 6.03 -2.38 -0.01 2.91 16 48 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 49 H 0.05 1.89 8.14 -2.38 -0.02 1.87 16 50 H 0.18 2.99 7.28 -2.91 -0.02 2.97 16 51 H 0.24 2.00 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -78.69 400.07 1.97 -76.72 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -0.58 Total: 14.72 kcal Atomic # 6 Polarization: -3.03 SS G_CDS: 8.28 Total: 5.24 kcal Atomic # 7 Polarization: -118.97 SS G_CDS: -7.71 Total: -126.68 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: -0.05 Total: -17.02 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.01 kcal Total: -78.69 1.97 -76.72 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698726085.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.295 kcal (2) G-P(sol) polarization free energy of solvation -78.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds