Wall clock time and date at job start Tue Mar 31 2020 20:06:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46847 * 2 1 4 4 C 1.50694 * 109.46882 * 119.99566 * 2 1 3 5 5 N 1.30496 * 125.65458 * 300.02903 * 4 2 1 6 6 C 1.34129 * 109.26033 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.02033 * 0.25890 * 6 5 4 8 8 N 1.35049 * 125.64953 * 120.00430 * 4 2 1 9 9 C 1.46501 * 126.39389 * 0.05253 * 8 4 2 10 10 C 1.50701 * 109.46867 * 85.00311 * 9 8 4 11 11 O 1.21281 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00174 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46131 * 59.99678 * 13 12 10 15 15 C 1.53045 * 109.45872 * 300.02541 * 13 12 10 16 16 C 1.53163 * 109.32787 * 301.35791 * 15 13 12 17 17 N 1.46928 * 108.77092 * 305.35516 * 16 15 13 18 18 C 1.36933 * 120.63403 * 233.63086 * 17 16 15 19 19 H 1.08000 * 120.00079 * 152.59577 * 18 17 16 20 20 C 1.38813 * 119.99716 * 332.60563 * 18 17 16 21 21 N 1.31622 * 119.99919 * 159.36407 * 20 18 17 22 22 Si 1.86801 * 120.00180 * 339.35299 * 20 18 17 23 23 H 1.48496 * 109.46760 * 92.90330 * 22 20 18 24 24 H 1.48495 * 109.47643 * 212.90536 * 22 20 18 25 25 H 1.48500 * 109.46979 * 332.91062 * 22 20 18 26 26 C 1.46932 * 118.73610 * 53.60715 * 17 16 15 27 27 C 1.53044 * 109.46030 * 179.97438 * 13 12 10 28 28 H 1.08989 * 109.47371 * 300.00078 * 1 2 3 29 29 H 1.09004 * 109.46751 * 60.00304 * 1 2 3 30 30 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47403 * 240.00316 * 2 1 3 32 32 H 1.08997 * 109.46843 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46665 * 299.99917 * 3 2 1 34 34 H 1.09002 * 109.47063 * 59.99611 * 3 2 1 35 35 H 1.08004 * 125.99403 * 180.02562 * 6 5 4 36 36 H 1.07999 * 126.59648 * 179.69915 * 7 6 5 37 37 H 1.08997 * 109.47153 * 204.99681 * 9 8 4 38 38 H 1.08994 * 109.47363 * 325.00312 * 9 8 4 39 39 H 0.97000 * 120.00115 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46720 * 60.00448 * 14 13 12 41 41 H 1.08994 * 109.47247 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47252 * 300.00671 * 14 13 12 43 43 H 1.08999 * 109.49519 * 61.29451 * 15 13 12 44 44 H 1.09002 * 109.49479 * 181.39334 * 15 13 12 45 45 H 1.08999 * 109.58910 * 185.57230 * 16 15 13 46 46 H 1.08999 * 109.70916 * 65.21187 * 16 15 13 47 47 H 0.96996 * 119.99819 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.58276 * 186.60398 * 26 17 16 49 49 H 1.09002 * 109.70267 * 66.25024 * 26 17 16 50 50 H 1.08998 * 109.49875 * 178.60197 * 27 13 12 51 51 H 1.08993 * 109.49741 * 298.66996 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7855 -0.3622 2.4637 6 6 2.3926 -1.2213 3.2959 7 6 3.0449 -2.1333 2.5500 8 7 2.8120 -1.8129 1.2397 9 6 3.3194 -2.5285 0.0663 10 6 4.5919 -1.8756 -0.4087 11 8 5.0314 -0.9076 0.1750 12 7 5.2416 -2.3674 -1.4822 13 6 6.4783 -1.7324 -1.9444 14 6 7.5228 -1.7776 -0.8273 15 6 6.1945 -0.2758 -2.3185 16 6 5.1235 -0.2328 -3.4126 17 7 5.5629 -1.0697 -4.5374 18 6 5.6138 -0.5608 -5.8076 19 1 6.3109 -0.9680 -6.5250 20 6 4.7696 0.4788 -6.1731 21 7 5.0665 1.2345 -7.2090 22 14 3.2119 0.8049 -5.1949 23 1 3.4909 1.8142 -4.1420 24 1 2.1547 1.3167 -6.1035 25 1 2.7519 -0.4570 -4.5615 26 6 5.9471 -2.4631 -4.2733 27 6 7.0089 -2.4810 -3.1693 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3663 -1.1856 4.3750 36 1 3.6365 -2.9597 2.9153 37 1 3.5210 -3.5661 0.3326 38 1 2.5752 -2.4956 -0.7293 39 1 4.8900 -3.1414 -1.9494 40 1 7.7247 -2.8150 -0.5605 41 1 8.4431 -1.3056 -1.1711 42 1 7.1448 -1.2450 0.0453 43 1 5.8386 0.2626 -1.4401 44 1 7.1089 0.1902 -2.6858 45 1 4.9889 0.7942 -3.7520 46 1 4.1811 -0.6142 -3.0196 47 1 4.4764 1.9606 -7.4646 48 1 6.3558 -2.9076 -5.1807 49 1 5.0741 -3.0300 -3.9499 50 1 7.9155 -1.9942 -3.5286 51 1 7.2333 -3.5121 -2.8964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699773585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:49 Heat of formation + Delta-G solvation = 49.267704 kcal Electronic energy + Delta-G solvation = -31397.208043 eV Core-core repulsion = 27526.442474 eV Total energy + Delta-G solvation = -3870.765569 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.24966 -40.34520 -37.79230 -35.35850 -34.76175 -34.06696 -32.23133 -31.25512 -30.55329 -28.90146 -27.85215 -27.66582 -27.12540 -24.03660 -22.93216 -22.92646 -22.04392 -21.25856 -20.76479 -19.22289 -18.99068 -17.71604 -17.29256 -16.86806 -15.72090 -15.33138 -15.17860 -15.01703 -14.71809 -14.29190 -14.17636 -13.84589 -13.78026 -13.73908 -13.58709 -13.47025 -13.22671 -12.87570 -12.75550 -12.38718 -12.17414 -12.11106 -12.03690 -11.85486 -11.50961 -11.46746 -11.36073 -11.18263 -10.96611 -10.90502 -10.66790 -10.40799 -10.20941 -9.95453 -9.91476 -9.79024 -9.54320 -9.26724 -9.00677 -8.63974 -8.34562 -7.04637 -6.00811 -3.37175 1.92315 2.46968 2.52888 3.16254 3.24197 3.28876 3.40911 3.44490 4.31008 4.40312 4.46323 4.47614 4.61421 4.70726 4.88418 4.96998 5.00463 5.11562 5.13945 5.20309 5.21302 5.37720 5.45078 5.61826 5.66554 5.68228 5.75263 5.79897 5.87661 5.90061 5.90569 5.96928 5.98500 6.05159 6.15503 6.20127 6.29435 6.35232 6.39469 6.42391 6.45002 6.54420 6.60560 6.71051 6.74944 6.86933 7.07924 7.49954 7.89727 8.11794 8.14946 8.26644 8.87404 9.65952 10.02939 11.15092 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.004791 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.292377 B = 5842.424668 C = 7467.277404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.235 3.765 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.055 4.055 8 N -0.440 5.440 9 C 0.080 3.920 10 C 0.496 3.504 11 O -0.514 6.514 12 N -0.709 5.709 13 C 0.185 3.815 14 C -0.160 4.160 15 C -0.144 4.144 16 C 0.134 3.866 17 N -0.604 5.604 18 C -0.263 4.263 19 H 0.085 0.915 20 C 0.026 3.974 21 N -0.906 5.906 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.273 1.273 26 C 0.149 3.851 27 C -0.138 4.138 28 H 0.068 0.932 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.076 0.924 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.167 0.833 36 H 0.170 0.830 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.399 0.601 40 H 0.048 0.952 41 H 0.062 0.938 42 H 0.073 0.927 43 H 0.074 0.926 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.019 0.981 47 H 0.263 0.737 48 H 0.066 0.934 49 H 0.017 0.983 50 H 0.081 0.919 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.292 -10.882 16.137 19.740 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.031 4.031 3 C -0.197 4.197 4 C -0.028 4.028 5 N -0.206 5.206 6 C -0.176 4.176 7 C -0.187 4.187 8 N -0.122 5.122 9 C -0.047 4.047 10 C 0.279 3.721 11 O -0.389 6.389 12 N -0.362 5.362 13 C 0.100 3.900 14 C -0.218 4.218 15 C -0.184 4.184 16 C 0.009 3.991 17 N -0.328 5.328 18 C -0.391 4.391 19 H 0.103 0.897 20 C -0.174 4.174 21 N -0.549 5.549 22 Si 0.713 3.287 23 H -0.215 1.215 24 H -0.231 1.231 25 H -0.198 1.198 26 C 0.023 3.977 27 C -0.178 4.178 28 H 0.087 0.913 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.234 0.766 40 H 0.068 0.932 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.093 0.907 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.037 0.963 47 H 0.073 0.927 48 H 0.085 0.915 49 H 0.035 0.965 50 H 0.099 0.901 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.422 -9.459 16.559 19.375 hybrid contribution -0.374 -0.986 0.005 1.054 sum -3.796 -10.444 16.563 19.946 Atomic orbital electron populations 1.21788 0.93091 1.01946 1.02859 1.19564 0.96465 0.96366 0.90714 1.21759 1.01878 0.93707 1.02403 1.23155 0.96140 0.87922 0.95581 1.70178 1.24752 1.26732 0.98919 1.22193 1.01446 0.94524 0.99408 1.22557 1.08202 1.05284 0.82618 1.44841 1.38262 1.23336 1.05760 1.21726 0.96469 0.97459 0.89092 1.20519 0.85450 0.84893 0.81189 1.90723 1.66544 1.25724 1.55911 1.46105 1.26518 1.33539 1.30029 1.20309 0.82609 0.93780 0.93257 1.22204 0.98494 1.01426 0.99644 1.22410 1.01543 0.94657 0.99793 1.21213 0.94044 0.96034 0.87843 1.44344 1.78171 1.06285 1.03958 1.18905 1.16268 1.16228 0.87720 0.89696 1.25265 0.98244 0.97614 0.96234 1.69833 1.37602 1.18651 1.28828 0.86954 0.85093 0.77942 0.78721 1.21526 1.23143 1.19840 1.20880 0.93999 0.86697 0.96156 1.22343 1.01028 0.99066 0.95348 0.91290 0.91724 0.92916 0.90572 0.92045 0.91905 0.91503 0.81551 0.81273 0.86171 0.86310 0.76606 0.93243 0.91863 0.90833 0.90713 0.91019 0.91183 0.96267 0.92711 0.91544 0.96492 0.90087 0.92096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 2 C -0.01 -0.14 3.25 -91.77 -0.30 -0.44 16 3 C -0.14 -1.99 9.18 37.16 0.34 -1.65 16 4 C 0.23 3.35 6.40 -155.42 -0.99 2.36 16 5 N -0.49 -7.45 11.25 -10.82 -0.12 -7.57 16 6 C -0.03 -0.36 11.87 -17.81 -0.21 -0.58 16 7 C -0.05 -0.63 11.58 -16.56 -0.19 -0.83 16 8 N -0.44 -5.47 2.24 -115.19 -0.26 -5.73 16 9 C 0.08 0.79 6.17 -5.19 -0.03 0.75 16 10 C 0.50 6.46 7.32 -10.98 -0.08 6.38 16 11 O -0.51 -8.62 12.64 5.56 0.07 -8.55 16 12 N -0.71 -8.70 4.10 -47.57 -0.20 -8.89 16 13 C 0.19 2.65 0.66 -131.77 -0.09 2.56 16 14 C -0.16 -2.10 8.40 37.16 0.31 -1.79 16 15 C -0.14 -2.60 4.66 -26.62 -0.12 -2.73 16 16 C 0.13 2.84 3.95 -3.72 -0.01 2.82 16 17 N -0.60 -13.36 2.77 -172.34 -0.48 -13.84 16 18 C -0.26 -7.07 10.03 -15.06 -0.15 -7.22 16 19 H 0.09 2.43 8.06 -52.49 -0.42 2.01 16 20 C 0.03 0.72 5.23 -17.43 -0.09 0.63 16 21 N -0.91 -27.37 13.97 55.49 0.78 -26.59 16 22 Si 0.88 22.00 24.34 -169.99 -4.14 17.87 16 23 H -0.29 -7.08 6.62 56.52 0.37 -6.71 16 24 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 25 H -0.27 -6.53 6.64 56.52 0.38 -6.16 16 26 C 0.15 2.54 6.24 -3.71 -0.02 2.52 16 27 C -0.14 -1.93 4.96 -26.61 -0.13 -2.06 16 28 H 0.07 0.81 8.14 -51.94 -0.42 0.39 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 1.02 6.85 -51.93 -0.36 0.66 16 32 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 33 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 34 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 35 H 0.17 1.69 8.06 -52.48 -0.42 1.26 16 36 H 0.17 1.40 8.06 -52.49 -0.42 0.98 16 37 H 0.12 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.12 1.02 7.28 -51.93 -0.38 0.64 16 39 H 0.40 3.95 7.27 -40.82 -0.30 3.65 16 40 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.11 6.17 -51.93 -0.32 0.79 16 43 H 0.07 1.42 6.20 -51.93 -0.32 1.09 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 45 H 0.07 1.70 4.50 -51.93 -0.23 1.46 16 46 H 0.02 0.41 6.67 -51.93 -0.35 0.06 16 47 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 48 H 0.07 1.15 7.93 -51.93 -0.41 0.74 16 49 H 0.02 0.27 6.94 -51.93 -0.36 -0.10 16 50 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 LS Contribution 390.73 15.07 5.89 5.89 Total: -1.00 -34.07 390.73 -8.45 -42.52 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: -8.56 Total: 5.38 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -1.44 Total: -0.49 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.28 Total: -62.62 kcal Atomic # 8 Polarization: -8.62 SS G_CDS: 0.07 Total: -8.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -4.14 Total: 17.87 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.07 -8.45 -42.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.792 kcal (2) G-P(sol) polarization free energy of solvation -34.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.525 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds