Wall clock time and date at job start Tue Mar 31 2020 20:06:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.46847 * 2 1 4 4 C 1.50694 * 109.46882 * 119.99566 * 2 1 3 5 5 N 1.30496 * 125.65458 * 300.02903 * 4 2 1 6 6 C 1.34129 * 109.26033 * 179.97438 * 5 4 2 7 7 C 1.34668 * 108.02033 * 0.25890 * 6 5 4 8 8 N 1.35049 * 125.64953 * 120.00430 * 4 2 1 9 9 C 1.46501 * 126.39389 * 0.05253 * 8 4 2 10 10 C 1.50701 * 109.46867 * 85.00311 * 9 8 4 11 11 O 1.21281 * 120.00140 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00062 * 179.97438 * 10 9 8 13 13 C 1.46499 * 120.00174 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46131 * 59.99678 * 13 12 10 15 15 C 1.53045 * 109.45872 * 300.02541 * 13 12 10 16 16 C 1.53163 * 109.32787 * 301.35791 * 15 13 12 17 17 N 1.46928 * 108.77092 * 305.35516 * 16 15 13 18 18 C 1.36933 * 120.63403 * 233.63086 * 17 16 15 19 19 H 1.08000 * 120.00079 * 152.59577 * 18 17 16 20 20 C 1.38813 * 119.99716 * 332.60563 * 18 17 16 21 21 N 1.31622 * 119.99919 * 159.36407 * 20 18 17 22 22 Si 1.86801 * 120.00180 * 339.35299 * 20 18 17 23 23 H 1.48496 * 109.46760 * 92.90330 * 22 20 18 24 24 H 1.48495 * 109.47643 * 212.90536 * 22 20 18 25 25 H 1.48500 * 109.46979 * 332.91062 * 22 20 18 26 26 C 1.46932 * 118.73610 * 53.60715 * 17 16 15 27 27 C 1.53044 * 109.46030 * 179.97438 * 13 12 10 28 28 H 1.08989 * 109.47371 * 300.00078 * 1 2 3 29 29 H 1.09004 * 109.46751 * 60.00304 * 1 2 3 30 30 H 1.09004 * 109.47090 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47403 * 240.00316 * 2 1 3 32 32 H 1.08997 * 109.46843 * 179.97438 * 3 2 1 33 33 H 1.08999 * 109.46665 * 299.99917 * 3 2 1 34 34 H 1.09002 * 109.47063 * 59.99611 * 3 2 1 35 35 H 1.08004 * 125.99403 * 180.02562 * 6 5 4 36 36 H 1.07999 * 126.59648 * 179.69915 * 7 6 5 37 37 H 1.08997 * 109.47153 * 204.99681 * 9 8 4 38 38 H 1.08994 * 109.47363 * 325.00312 * 9 8 4 39 39 H 0.97000 * 120.00115 * 0.02562 * 12 10 9 40 40 H 1.09002 * 109.46720 * 60.00448 * 14 13 12 41 41 H 1.08994 * 109.47247 * 179.97438 * 14 13 12 42 42 H 1.08996 * 109.47252 * 300.00671 * 14 13 12 43 43 H 1.08999 * 109.49519 * 61.29451 * 15 13 12 44 44 H 1.09002 * 109.49479 * 181.39334 * 15 13 12 45 45 H 1.08999 * 109.58910 * 185.57230 * 16 15 13 46 46 H 1.08999 * 109.70916 * 65.21187 * 16 15 13 47 47 H 0.96996 * 119.99819 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.58276 * 186.60398 * 26 17 16 49 49 H 1.09002 * 109.70267 * 66.25024 * 26 17 16 50 50 H 1.08998 * 109.49875 * 178.60197 * 27 13 12 51 51 H 1.08993 * 109.49741 * 298.66996 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7103 1.2305 5 7 1.7855 -0.3622 2.4637 6 6 2.3926 -1.2213 3.2959 7 6 3.0449 -2.1333 2.5500 8 7 2.8120 -1.8129 1.2397 9 6 3.3194 -2.5285 0.0663 10 6 4.5919 -1.8756 -0.4087 11 8 5.0314 -0.9076 0.1750 12 7 5.2416 -2.3674 -1.4822 13 6 6.4783 -1.7324 -1.9444 14 6 7.5228 -1.7776 -0.8273 15 6 6.1945 -0.2758 -2.3185 16 6 5.1235 -0.2328 -3.4126 17 7 5.5629 -1.0697 -4.5374 18 6 5.6138 -0.5608 -5.8076 19 1 6.3109 -0.9680 -6.5250 20 6 4.7696 0.4788 -6.1731 21 7 5.0665 1.2345 -7.2090 22 14 3.2119 0.8049 -5.1949 23 1 3.4909 1.8142 -4.1420 24 1 2.1547 1.3167 -6.1035 25 1 2.7519 -0.4570 -4.5615 26 6 5.9471 -2.4631 -4.2733 27 6 7.0089 -2.4810 -3.1693 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9564 0.8900 35 1 2.3663 -1.1856 4.3750 36 1 3.6365 -2.9597 2.9153 37 1 3.5210 -3.5661 0.3326 38 1 2.5752 -2.4956 -0.7293 39 1 4.8900 -3.1414 -1.9494 40 1 7.7247 -2.8150 -0.5605 41 1 8.4431 -1.3056 -1.1711 42 1 7.1448 -1.2450 0.0453 43 1 5.8386 0.2626 -1.4401 44 1 7.1089 0.1902 -2.6858 45 1 4.9889 0.7942 -3.7520 46 1 4.1811 -0.6142 -3.0196 47 1 4.4764 1.9606 -7.4646 48 1 6.3558 -2.9076 -5.1807 49 1 5.0741 -3.0300 -3.9499 50 1 7.9155 -1.9942 -3.5286 51 1 7.2333 -3.5121 -2.8964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699773585.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:46 Heat of formation + Delta-G solvation = 27.151602 kcal Electronic energy + Delta-G solvation = -31398.167069 eV Core-core repulsion = 27526.442474 eV Total energy + Delta-G solvation = -3871.724596 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.16691 -41.48128 -39.10066 -36.35081 -36.28635 -35.00068 -33.88356 -32.70890 -32.02325 -29.83008 -29.33713 -28.55433 -28.14225 -25.74661 -24.44100 -23.93035 -23.22928 -22.40903 -21.88920 -20.35864 -20.11370 -18.93574 -18.54328 -18.14081 -17.24254 -16.63599 -16.36304 -16.07592 -15.84634 -15.75072 -15.31529 -15.24400 -15.21309 -14.80702 -14.69439 -14.55011 -14.30298 -14.23716 -13.87876 -13.73307 -13.63814 -13.42560 -13.10872 -13.10468 -12.90271 -12.66965 -12.57262 -12.48070 -12.21949 -12.19288 -12.03929 -11.97991 -11.64498 -11.58123 -11.35857 -11.02972 -10.91274 -10.76324 -10.31714 -10.06027 -9.25899 -8.92059 -8.18041 -5.48444 1.00052 1.29030 1.34972 1.44861 1.52268 1.69388 2.21497 2.28574 2.39954 3.03402 3.35191 3.36887 3.55326 3.66821 3.75842 3.81943 3.91494 4.03367 4.06177 4.08938 4.12417 4.28727 4.31336 4.41347 4.58227 4.61903 4.64856 4.69308 4.70260 4.78841 4.80734 4.83005 4.87064 4.89457 4.96933 4.98755 5.09772 5.12103 5.16369 5.19905 5.24847 5.31080 5.38801 5.39822 5.62497 5.86759 5.88329 6.12709 6.16257 6.57278 6.91656 7.17921 7.22026 7.62633 8.03010 9.01796 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012282 B = 0.004791 C = 0.003749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.292377 B = 5842.424668 C = 7467.277404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 C -0.135 4.135 4 C 0.214 3.786 5 N -0.520 5.520 6 C -0.057 4.057 7 C -0.043 4.043 8 N -0.442 5.442 9 C 0.080 3.920 10 C 0.494 3.506 11 O -0.556 6.556 12 N -0.701 5.701 13 C 0.192 3.808 14 C -0.150 4.150 15 C -0.137 4.137 16 C 0.138 3.862 17 N -0.616 5.616 18 C -0.244 4.244 19 H 0.057 0.943 20 C -0.034 4.034 21 N -0.957 5.957 22 Si 0.940 3.060 23 H -0.291 1.291 24 H -0.312 1.312 25 H -0.250 1.250 26 C 0.141 3.859 27 C -0.126 4.126 28 H 0.060 0.940 29 H 0.073 0.927 30 H 0.063 0.937 31 H 0.077 0.923 32 H 0.033 0.967 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.184 0.816 36 H 0.206 0.794 37 H 0.167 0.833 38 H 0.136 0.864 39 H 0.415 0.585 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.053 0.947 43 H 0.063 0.937 44 H 0.055 0.945 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.260 0.740 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.067 0.933 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.758 -14.557 18.056 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.032 4.032 3 C -0.193 4.193 4 C -0.049 4.049 5 N -0.239 5.239 6 C -0.203 4.203 7 C -0.175 4.175 8 N -0.124 5.124 9 C -0.046 4.046 10 C 0.280 3.720 11 O -0.434 6.434 12 N -0.355 5.355 13 C 0.106 3.894 14 C -0.208 4.208 15 C -0.177 4.177 16 C 0.013 3.987 17 N -0.340 5.340 18 C -0.373 4.373 19 H 0.075 0.925 20 C -0.229 4.229 21 N -0.604 5.604 22 Si 0.770 3.230 23 H -0.219 1.219 24 H -0.242 1.242 25 H -0.174 1.174 26 C 0.017 3.983 27 C -0.165 4.165 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.053 0.947 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.201 0.799 36 H 0.222 0.778 37 H 0.184 0.816 38 H 0.154 0.846 39 H 0.253 0.747 40 H 0.094 0.906 41 H 0.081 0.919 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.047 0.953 47 H 0.068 0.932 48 H 0.080 0.920 49 H 0.067 0.933 50 H 0.086 0.914 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.892 -13.213 18.506 23.070 hybrid contribution -0.098 0.133 -0.557 0.581 sum -3.990 -13.081 17.949 22.565 Atomic orbital electron populations 1.21730 0.91680 1.02671 1.02890 1.19582 0.97650 0.95282 0.90731 1.21695 0.99998 0.95087 1.02496 1.23207 0.97260 0.89005 0.95418 1.70110 1.25959 1.27982 0.99896 1.22658 1.02229 0.94970 1.00451 1.23132 1.06962 1.05329 0.82097 1.45003 1.37650 1.22935 1.06798 1.22002 0.94841 0.98912 0.88837 1.21078 0.86077 0.84245 0.80648 1.90730 1.67805 1.27615 1.57204 1.45959 1.25811 1.33757 1.29939 1.20112 0.84022 0.91217 0.94050 1.22085 0.97763 1.02816 0.98101 1.22275 0.99565 0.97841 0.97988 1.21102 0.95458 0.93898 0.88224 1.44453 1.78460 1.08744 1.02378 1.18901 1.14310 1.15042 0.89078 0.92529 1.25861 1.01206 0.98228 0.97621 1.69965 1.38840 1.20029 1.31548 0.86003 0.81328 0.78522 0.77133 1.21897 1.24156 1.17379 1.21173 0.96001 0.83781 0.97388 1.22225 0.99140 1.01492 0.93636 0.92119 0.90787 0.91814 0.90439 0.94732 0.91338 0.91848 0.79887 0.77757 0.81554 0.84631 0.74724 0.90567 0.91904 0.92783 0.91841 0.92640 0.94906 0.95296 0.93154 0.91995 0.93314 0.91425 0.87573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 9.18 71.98 0.66 -2.15 16 2 C -0.01 -0.31 3.25 -11.54 -0.04 -0.35 16 3 C -0.13 -3.88 9.18 71.98 0.66 -3.22 16 4 C 0.21 5.80 6.40 138.13 0.88 6.69 16 5 N -0.52 -15.51 11.25 -188.13 -2.12 -17.63 16 6 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 7 C -0.04 -0.86 11.58 83.09 0.96 0.10 16 8 N -0.44 -9.67 2.24 -518.35 -1.16 -10.83 16 9 C 0.08 1.21 6.17 85.63 0.53 1.74 16 10 C 0.49 11.16 7.32 87.66 0.64 11.80 16 11 O -0.56 -17.71 12.64 -3.03 -0.04 -17.74 16 12 N -0.70 -14.17 4.10 -422.79 -1.74 -15.91 16 13 C 0.19 4.90 0.66 3.63 0.00 4.90 16 14 C -0.15 -3.47 8.40 71.98 0.60 -2.87 16 15 C -0.14 -4.84 4.66 30.66 0.14 -4.69 16 16 C 0.14 5.73 3.95 86.35 0.34 6.08 16 17 N -0.62 -26.52 2.77 -699.15 -1.94 -28.46 16 18 C -0.24 -13.24 10.03 84.03 0.84 -12.40 16 19 H 0.06 3.34 8.06 -2.91 -0.02 3.32 16 20 C -0.03 -1.99 5.23 84.86 0.44 -1.54 16 21 N -0.96 -59.96 13.97 21.65 0.30 -59.66 16 22 Si 0.94 46.22 24.34 68.60 1.67 47.89 16 23 H -0.29 -14.31 6.62 99.48 0.66 -13.65 16 24 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 25 H -0.25 -11.15 6.64 99.48 0.66 -10.49 16 26 C 0.14 4.36 6.24 86.36 0.54 4.90 16 27 C -0.13 -3.02 4.96 30.67 0.15 -2.87 16 28 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.08 1.92 6.85 -2.39 -0.02 1.90 16 32 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.06 1.81 8.14 -2.39 -0.02 1.80 16 35 H 0.18 3.45 8.06 -2.91 -0.02 3.43 16 36 H 0.21 2.42 8.06 -2.91 -0.02 2.39 16 37 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.14 1.66 7.28 -2.39 -0.02 1.65 16 39 H 0.41 5.79 7.27 -92.71 -0.67 5.12 16 40 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.51 6.17 -2.39 -0.01 1.50 16 43 H 0.06 2.41 6.20 -2.39 -0.01 2.40 16 44 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.03 1.61 4.50 -2.39 -0.01 1.59 16 46 H 0.03 1.15 6.67 -2.39 -0.02 1.14 16 47 H 0.26 15.58 8.31 -92.71 -0.77 14.81 16 48 H 0.06 1.99 7.93 -2.39 -0.02 1.97 16 49 H 0.05 1.25 6.94 -2.39 -0.02 1.23 16 50 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 51 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 Total: -1.00 -78.74 390.73 3.50 -75.24 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: 0.15 Total: 21.35 kcal Atomic # 6 Polarization: -2.62 SS G_CDS: 8.36 Total: 5.74 kcal Atomic # 7 Polarization: -125.84 SS G_CDS: -6.65 Total: -132.49 kcal Atomic # 8 Polarization: -17.71 SS G_CDS: -0.04 Total: -17.74 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Total: -78.74 3.50 -75.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699773585.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.396 kcal (2) G-P(sol) polarization free energy of solvation -78.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds