Wall clock time and date at job start Tue Mar 31 2020 19:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.50700 * 109.47338 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38900 * 84.99092 * 4 3 2 6 6 C 1.41504 * 105.50671 * 180.02562 * 5 4 3 7 7 C 1.47704 * 126.51760 * 179.97438 * 6 5 4 8 8 O 1.21564 * 120.00494 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99832 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00123 * 174.89487 * 9 7 6 11 11 H 1.08999 * 109.46675 * 38.30491 * 10 9 7 12 12 C 1.52991 * 109.47265 * 158.30712 * 10 9 7 13 13 N 1.46500 * 109.47295 * 302.17719 * 12 10 9 14 14 C 1.36937 * 120.00167 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00126 * 359.97438 * 14 13 12 16 16 C 1.38819 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99615 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47027 * 89.99865 * 18 16 14 20 20 H 1.48503 * 109.46939 * 209.99572 * 18 16 14 21 21 H 1.48493 * 109.47224 * 329.99910 * 18 16 14 22 22 C 1.52999 * 109.46935 * 278.30821 * 10 9 7 23 23 C 1.54261 * 110.03488 * 299.47125 * 22 10 9 24 24 C 1.54959 * 104.16074 * 217.13749 * 23 22 10 25 25 C 1.54886 * 102.77953 * 37.89048 * 24 23 22 26 26 C 1.53879 * 110.03118 * 182.25393 * 22 10 9 27 27 N 1.31805 * 106.96078 * 0.02562 * 6 5 4 28 28 N 1.28473 * 110.07630 * 0.02562 * 27 6 5 29 29 H 0.96997 * 124.88447 * 179.97438 * 28 27 6 30 30 H 1.09003 * 109.46508 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47235 * 299.99999 * 1 2 3 32 32 H 1.08991 * 109.46994 * 60.00628 * 1 2 3 33 33 H 1.08998 * 109.47235 * 240.00001 * 2 1 3 34 34 H 1.09004 * 109.47188 * 119.99652 * 2 1 3 35 35 H 1.09001 * 109.47642 * 59.99792 * 3 2 1 36 36 H 1.09004 * 109.46902 * 299.99827 * 3 2 1 37 37 H 1.08008 * 127.24826 * 0.27114 * 5 4 3 38 38 H 0.96998 * 119.99642 * 354.89786 * 9 7 6 39 39 H 1.09011 * 109.47132 * 62.17349 * 12 10 9 40 40 H 1.08999 * 109.47539 * 182.17495 * 12 10 9 41 41 H 0.97000 * 120.00010 * 359.97438 * 13 12 10 42 42 H 0.97002 * 119.99534 * 180.02562 * 17 16 14 43 43 H 1.09001 * 110.01733 * 60.87033 * 22 10 9 44 44 H 1.08999 * 110.48598 * 335.78906 * 23 22 10 45 45 H 1.09002 * 110.48529 * 98.42664 * 23 22 10 46 46 H 1.09002 * 110.72293 * 279.57184 * 24 23 22 47 47 H 1.09007 * 110.76372 * 156.22332 * 24 23 22 48 48 H 1.08998 * 110.48916 * 203.40667 * 25 24 23 49 49 H 1.09004 * 110.59795 * 80.81289 * 25 24 23 50 50 H 1.08997 * 110.03398 * 238.57385 * 26 22 10 51 51 H 1.09001 * 110.03186 * 359.95360 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3496 1.3477 -1.0865 6 6 5.6719 1.3912 -0.5845 7 6 6.9159 1.3211 -1.3778 8 8 6.8603 1.2156 -2.5875 9 7 8.1128 1.3742 -0.7602 10 6 9.3443 1.1927 -1.5326 11 1 9.2406 1.6810 -2.5016 12 6 10.5189 1.8117 -0.7726 13 7 10.2495 3.2310 -0.5292 14 6 11.1667 3.9972 0.1393 15 1 12.0885 3.5551 0.4875 16 6 10.9117 5.3422 0.3695 17 7 9.7885 5.8811 -0.0553 18 14 12.1626 6.3872 1.2821 19 1 13.1093 6.9886 0.3088 20 1 11.4604 7.4667 2.0215 21 1 12.9123 5.5369 2.2412 22 6 9.6011 -0.3014 -1.7393 23 6 9.7630 -1.0034 -0.3752 24 6 10.8639 -2.0652 -0.6236 25 6 11.8415 -1.3294 -1.5733 26 6 10.9218 -0.5088 -2.5011 27 7 5.5823 1.5049 0.7255 28 7 4.3484 1.5354 1.0822 29 1 4.0374 1.6144 1.9975 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 4.0449 1.2614 -2.1191 38 1 8.1587 1.5326 0.1956 39 1 10.6467 1.2976 0.1801 40 1 11.4285 1.7109 -1.3647 41 1 9.4218 3.6282 -0.8422 42 1 9.6105 6.8210 0.1052 43 1 8.7761 -0.7486 -2.2939 44 1 10.0845 -0.2911 0.3846 45 1 8.8296 -1.4825 -0.0796 46 1 10.4462 -2.9480 -1.1076 47 1 11.3600 -2.3331 0.3093 48 1 12.4244 -2.0465 -2.1512 49 1 12.5008 -0.6697 -1.0090 50 1 10.7379 -1.0573 -3.4249 51 1 11.3794 0.4550 -2.7243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699792243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:01 Heat of formation + Delta-G solvation = 19.902629 kcal Electronic energy + Delta-G solvation = -29266.127775 eV Core-core repulsion = 25394.088840 eV Total energy + Delta-G solvation = -3872.038935 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.64733 -39.64263 -37.91347 -35.62739 -35.10460 -33.46707 -31.96626 -31.19575 -30.78876 -29.48159 -28.45618 -26.72027 -26.20279 -24.30508 -22.87681 -22.22729 -21.68887 -21.03655 -20.46251 -19.69862 -18.68899 -17.72255 -17.16559 -16.61167 -16.03824 -15.71594 -15.42215 -15.20651 -14.90542 -14.49686 -14.17616 -13.98076 -13.71677 -13.65943 -13.56865 -13.40106 -13.14449 -12.87607 -12.52847 -12.43709 -11.99335 -11.82003 -11.65183 -11.38599 -11.13426 -11.05753 -10.89903 -10.88361 -10.82403 -10.78958 -10.72853 -10.62262 -10.33820 -10.14278 -9.84153 -9.70066 -9.66476 -9.32403 -8.96501 -8.83416 -8.49551 -6.88258 -5.72239 -3.01622 1.73417 2.13219 2.83937 3.45232 3.50168 3.51956 3.57504 3.74750 4.36462 4.50272 4.60527 4.64674 4.69705 4.83834 4.85176 4.95681 5.02174 5.09615 5.34818 5.37620 5.43093 5.52367 5.52970 5.58283 5.63227 5.65701 5.69657 5.71387 5.73025 5.84825 5.89869 5.90701 5.96323 5.97415 6.04676 6.10376 6.19164 6.26148 6.36401 6.40194 6.42590 6.55764 6.61077 6.64431 6.85290 6.95549 7.07619 7.72593 7.80039 8.09840 8.45295 8.63118 9.56903 10.14277 10.49384 11.49992 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008449 B = 0.003410 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.382557 B = 8210.009588 C =10765.017746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.049 4.049 4 C 0.010 3.990 5 C -0.176 4.176 6 C -0.004 4.004 7 C 0.603 3.397 8 O -0.541 6.541 9 N -0.695 5.695 10 C 0.144 3.856 11 H 0.087 0.913 12 C 0.144 3.856 13 N -0.731 5.731 14 C -0.239 4.239 15 H 0.070 0.930 16 C -0.013 4.013 17 N -0.930 5.930 18 Si 0.906 3.094 19 H -0.290 1.290 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.097 4.097 23 C -0.122 4.122 24 C -0.123 4.123 25 C -0.123 4.123 26 C -0.120 4.120 27 N -0.251 5.251 28 N -0.381 5.381 29 H 0.442 0.558 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.070 0.930 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.160 0.840 38 H 0.410 0.590 39 H 0.029 0.971 40 H 0.037 0.963 41 H 0.386 0.614 42 H 0.254 0.746 43 H 0.073 0.927 44 H 0.077 0.923 45 H 0.057 0.943 46 H 0.060 0.940 47 H 0.061 0.939 48 H 0.059 0.941 49 H 0.068 0.932 50 H 0.060 0.940 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.172 -16.011 1.109 21.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.088 4.088 4 C -0.115 4.115 5 C -0.204 4.204 6 C -0.165 4.165 7 C 0.387 3.613 8 O -0.417 6.417 9 N -0.345 5.345 10 C 0.039 3.961 11 H 0.105 0.895 12 C 0.016 3.984 13 N -0.376 5.376 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.209 4.209 17 N -0.578 5.578 18 Si 0.737 3.263 19 H -0.218 1.218 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.117 4.117 23 C -0.159 4.159 24 C -0.161 4.161 25 C -0.160 4.160 26 C -0.158 4.158 27 N -0.086 5.086 28 N -0.095 5.095 29 H 0.286 0.714 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.089 0.911 34 H 0.080 0.920 35 H 0.093 0.907 36 H 0.109 0.891 37 H 0.178 0.822 38 H 0.246 0.754 39 H 0.046 0.954 40 H 0.055 0.945 41 H 0.220 0.780 42 H 0.064 0.936 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.076 0.924 46 H 0.079 0.921 47 H 0.080 0.920 48 H 0.078 0.922 49 H 0.087 0.913 50 H 0.079 0.921 51 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -13.356 -15.952 1.244 20.842 hybrid contribution -0.258 0.973 0.692 1.222 sum -13.614 -14.979 1.936 20.334 Atomic orbital electron populations 1.21782 0.95315 1.01938 1.02010 1.21545 0.95894 0.95616 1.02838 1.20200 0.86472 0.98127 1.04027 1.21372 0.94879 1.07805 0.87471 1.21479 0.90540 1.08735 0.99631 1.22030 0.95367 1.09245 0.89843 1.16858 0.81809 0.76401 0.86239 1.90755 1.86899 1.50996 1.13076 1.45801 1.04753 1.71000 1.12900 1.21312 0.83801 0.94447 0.96494 0.89481 1.21075 0.94009 0.86621 0.96687 1.42377 1.22794 1.03835 1.68594 1.19196 0.98646 0.91101 1.28124 0.91194 1.24749 0.97467 0.97003 1.01684 1.69684 1.24330 1.12396 1.51394 0.86207 0.80492 0.80253 0.79317 1.21764 1.21885 1.20809 1.22094 0.97972 0.95269 0.96410 1.22516 0.98177 0.97720 0.97531 1.22481 0.96715 0.97812 0.99057 1.22343 0.97602 0.98550 0.97539 1.22207 0.94882 1.00786 0.97949 1.73632 1.01239 1.18495 1.15267 1.43308 1.03024 1.53469 1.09737 0.71371 0.92509 0.92694 0.92379 0.91147 0.92030 0.90672 0.89052 0.82245 0.75439 0.95353 0.94536 0.78009 0.93587 0.90902 0.90453 0.92397 0.92108 0.91989 0.92244 0.91344 0.92150 0.90738 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.78 9.91 37.16 0.37 -0.41 16 2 C -0.12 -0.76 5.92 -26.73 -0.16 -0.92 16 3 C -0.05 -0.34 5.77 -27.88 -0.16 -0.50 16 4 C 0.01 0.11 6.48 -82.21 -0.53 -0.42 16 5 C -0.18 -2.42 10.73 -39.36 -0.42 -2.84 16 6 C 0.00 -0.06 7.13 -82.77 -0.59 -0.65 16 7 C 0.60 11.23 7.74 -12.39 -0.10 11.14 16 8 O -0.54 -11.27 16.61 5.31 0.09 -11.18 16 9 N -0.69 -12.47 4.31 -54.80 -0.24 -12.71 16 10 C 0.14 2.57 1.82 -67.94 -0.12 2.44 16 11 H 0.09 1.75 7.61 -51.93 -0.40 1.35 16 12 C 0.14 2.87 5.24 -4.05 -0.02 2.85 16 13 N -0.73 -18.60 5.45 -59.91 -0.33 -18.93 16 14 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 15 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 16 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 17 N -0.93 -28.61 13.06 55.49 0.72 -27.88 16 18 Si 0.91 22.63 29.55 -169.99 -5.02 17.61 16 19 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 20 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 21 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 22 C -0.10 -1.44 2.91 -89.50 -0.26 -1.71 16 23 C -0.12 -1.65 5.84 -25.04 -0.15 -1.79 16 24 C -0.12 -1.43 6.91 -24.70 -0.17 -1.60 16 25 C -0.12 -1.47 6.83 -25.07 -0.17 -1.64 16 26 C -0.12 -1.61 5.93 -25.61 -0.15 -1.77 16 27 N -0.25 -3.77 11.93 33.42 0.40 -3.37 16 28 N -0.38 -4.24 6.83 33.50 0.23 -4.01 16 29 H 0.44 3.27 8.96 -190.44 -1.71 1.57 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 36 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.16 2.04 8.06 -52.48 -0.42 1.62 16 38 H 0.41 7.45 8.31 -40.82 -0.34 7.11 16 39 H 0.03 0.56 5.98 -51.92 -0.31 0.25 16 40 H 0.04 0.73 6.41 -51.93 -0.33 0.40 16 41 H 0.39 10.64 7.43 -40.82 -0.30 10.34 16 42 H 0.25 7.59 8.31 -40.82 -0.34 7.25 16 43 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 44 H 0.08 1.13 5.68 -51.93 -0.30 0.83 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 49 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 50 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 51 H 0.07 1.08 6.17 -51.93 -0.32 0.76 16 LS Contribution 408.48 15.07 6.16 6.16 Total: -1.00 -33.73 408.48 -10.77 -44.50 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: -9.89 Total: 14.96 kcal Atomic # 6 Polarization: -2.27 SS G_CDS: -2.88 Total: -5.15 kcal Atomic # 7 Polarization: -67.68 SS G_CDS: 0.79 Total: -66.90 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.18 kcal Atomic # 14 Polarization: 22.63 SS G_CDS: -5.02 Total: 17.61 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.73 -10.77 -44.50 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699792243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.403 kcal (2) G-P(sol) polarization free energy of solvation -33.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds