Wall clock time and date at job start Tue Mar 31 2020 19:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46928 * 2 1 4 4 C 1.50700 * 109.47338 * 180.02562 * 3 2 1 5 5 C 1.35362 * 126.38900 * 84.99092 * 4 3 2 6 6 C 1.41504 * 105.50671 * 180.02562 * 5 4 3 7 7 C 1.47704 * 126.51760 * 179.97438 * 6 5 4 8 8 O 1.21564 * 120.00494 * 0.02562 * 7 6 5 9 9 N 1.34785 * 119.99832 * 180.02562 * 7 6 5 10 10 C 1.46499 * 120.00123 * 174.89487 * 9 7 6 11 11 H 1.08999 * 109.46675 * 38.30491 * 10 9 7 12 12 C 1.52991 * 109.47265 * 158.30712 * 10 9 7 13 13 N 1.46500 * 109.47295 * 302.17719 * 12 10 9 14 14 C 1.36937 * 120.00167 * 180.02562 * 13 12 10 15 15 H 1.07998 * 120.00126 * 359.97438 * 14 13 12 16 16 C 1.38819 * 120.00105 * 179.97438 * 14 13 12 17 17 N 1.31623 * 119.99615 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 119.99888 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.47027 * 89.99865 * 18 16 14 20 20 H 1.48503 * 109.46939 * 209.99572 * 18 16 14 21 21 H 1.48493 * 109.47224 * 329.99910 * 18 16 14 22 22 C 1.52999 * 109.46935 * 278.30821 * 10 9 7 23 23 C 1.54261 * 110.03488 * 299.47125 * 22 10 9 24 24 C 1.54959 * 104.16074 * 217.13749 * 23 22 10 25 25 C 1.54886 * 102.77953 * 37.89048 * 24 23 22 26 26 C 1.53879 * 110.03118 * 182.25393 * 22 10 9 27 27 N 1.31805 * 106.96078 * 0.02562 * 6 5 4 28 28 N 1.28473 * 110.07630 * 0.02562 * 27 6 5 29 29 H 0.96997 * 124.88447 * 179.97438 * 28 27 6 30 30 H 1.09003 * 109.46508 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47235 * 299.99999 * 1 2 3 32 32 H 1.08991 * 109.46994 * 60.00628 * 1 2 3 33 33 H 1.08998 * 109.47235 * 240.00001 * 2 1 3 34 34 H 1.09004 * 109.47188 * 119.99652 * 2 1 3 35 35 H 1.09001 * 109.47642 * 59.99792 * 3 2 1 36 36 H 1.09004 * 109.46902 * 299.99827 * 3 2 1 37 37 H 1.08008 * 127.24826 * 0.27114 * 5 4 3 38 38 H 0.96998 * 119.99642 * 354.89786 * 9 7 6 39 39 H 1.09011 * 109.47132 * 62.17349 * 12 10 9 40 40 H 1.08999 * 109.47539 * 182.17495 * 12 10 9 41 41 H 0.97000 * 120.00010 * 359.97438 * 13 12 10 42 42 H 0.97002 * 119.99534 * 180.02562 * 17 16 14 43 43 H 1.09001 * 110.01733 * 60.87033 * 22 10 9 44 44 H 1.08999 * 110.48598 * 335.78906 * 23 22 10 45 45 H 1.09002 * 110.48529 * 98.42664 * 23 22 10 46 46 H 1.09002 * 110.72293 * 279.57184 * 24 23 22 47 47 H 1.09007 * 110.76372 * 156.22332 * 24 23 22 48 48 H 1.08998 * 110.48916 * 203.40667 * 25 24 23 49 49 H 1.09004 * 110.59795 * 80.81289 * 25 24 23 50 50 H 1.08997 * 110.03398 * 238.57385 * 26 22 10 51 51 H 1.09001 * 110.03186 * 359.95360 * 26 22 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 -0.0006 5 6 4.3496 1.3477 -1.0865 6 6 5.6719 1.3912 -0.5845 7 6 6.9159 1.3211 -1.3778 8 8 6.8603 1.2156 -2.5875 9 7 8.1128 1.3742 -0.7602 10 6 9.3443 1.1927 -1.5326 11 1 9.2406 1.6810 -2.5016 12 6 10.5189 1.8117 -0.7726 13 7 10.2495 3.2310 -0.5292 14 6 11.1667 3.9972 0.1393 15 1 12.0885 3.5551 0.4875 16 6 10.9117 5.3422 0.3695 17 7 9.7885 5.8811 -0.0553 18 14 12.1626 6.3872 1.2821 19 1 13.1093 6.9886 0.3088 20 1 11.4604 7.4667 2.0215 21 1 12.9123 5.5369 2.2412 22 6 9.6011 -0.3014 -1.7393 23 6 9.7630 -1.0034 -0.3752 24 6 10.8639 -2.0652 -0.6236 25 6 11.8415 -1.3294 -1.5733 26 6 10.9218 -0.5088 -2.5011 27 7 5.5823 1.5049 0.7255 28 7 4.3484 1.5354 1.0822 29 1 4.0374 1.6144 1.9975 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 1.6766 1.9564 0.8899 36 1 1.6766 1.9563 -0.8900 37 1 4.0449 1.2614 -2.1191 38 1 8.1587 1.5326 0.1956 39 1 10.6467 1.2976 0.1801 40 1 11.4285 1.7109 -1.3647 41 1 9.4218 3.6282 -0.8422 42 1 9.6105 6.8210 0.1052 43 1 8.7761 -0.7486 -2.2939 44 1 10.0845 -0.2911 0.3846 45 1 8.8296 -1.4825 -0.0796 46 1 10.4462 -2.9480 -1.1076 47 1 11.3600 -2.3331 0.3093 48 1 12.4244 -2.0465 -2.1512 49 1 12.5008 -0.6697 -1.0090 50 1 10.7379 -1.0573 -3.4249 51 1 11.3794 0.4550 -2.7243 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699792243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:59 Heat of formation + Delta-G solvation = -2.178597 kcal Electronic energy + Delta-G solvation = -29267.085288 eV Core-core repulsion = 25394.088840 eV Total energy + Delta-G solvation = -3872.996448 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -43.70319 -41.04819 -39.23288 -36.74475 -36.23511 -35.22880 -33.30520 -32.67144 -31.89248 -30.87353 -29.53127 -27.87213 -27.37110 -25.81166 -24.63062 -23.18389 -22.83008 -21.92896 -21.54795 -20.99788 -20.05790 -19.12921 -18.67560 -18.01967 -17.41176 -16.87125 -16.61236 -16.30818 -16.12318 -15.92353 -15.33842 -15.32081 -15.09139 -14.98586 -14.79873 -14.59752 -14.29318 -14.03903 -13.92592 -13.52007 -13.08451 -13.04447 -12.76824 -12.64949 -12.45723 -12.22386 -12.12220 -12.11729 -11.92639 -11.89124 -11.87454 -11.86425 -11.78441 -11.52544 -11.40197 -11.25976 -11.10921 -10.88847 -10.47187 -9.96411 -9.93501 -8.99281 -7.93362 -5.23356 0.51852 1.10532 1.46773 1.48977 1.57212 1.87970 2.26246 2.37574 2.56018 3.36993 3.40936 3.62837 3.64940 3.73675 3.79191 3.96913 4.04731 4.17871 4.19148 4.27797 4.34712 4.46886 4.51606 4.56975 4.62215 4.68610 4.70572 4.75459 4.84983 4.85318 4.87991 4.92260 4.95070 5.00048 5.10603 5.14113 5.17180 5.23706 5.30055 5.31816 5.34966 5.36120 5.48690 5.49480 5.50077 5.55068 5.61740 6.10786 6.26360 6.48248 6.87220 7.17519 7.33092 8.06630 8.30800 9.29882 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008449 B = 0.003410 C = 0.002600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.382557 B = 8210.009588 C =10765.017746 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.046 4.046 4 C 0.038 3.962 5 C -0.200 4.200 6 C -0.035 4.035 7 C 0.598 3.402 8 O -0.573 6.573 9 N -0.692 5.692 10 C 0.153 3.847 11 H 0.058 0.942 12 C 0.149 3.851 13 N -0.744 5.744 14 C -0.241 4.241 15 H 0.080 0.920 16 C -0.077 4.077 17 N -0.970 5.970 18 Si 0.975 3.025 19 H -0.289 1.289 20 H -0.298 1.298 21 H -0.266 1.266 22 C -0.089 4.089 23 C -0.119 4.119 24 C -0.116 4.116 25 C -0.119 4.119 26 C -0.121 4.121 27 N -0.270 5.270 28 N -0.364 5.364 29 H 0.460 0.540 30 H 0.058 0.942 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.162 0.838 38 H 0.409 0.591 39 H 0.041 0.959 40 H 0.043 0.957 41 H 0.371 0.629 42 H 0.249 0.751 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.062 0.938 50 H 0.072 0.928 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.530 -17.405 2.571 22.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.156 4.156 3 C -0.085 4.085 4 C -0.089 4.089 5 C -0.228 4.228 6 C -0.195 4.195 7 C 0.384 3.616 8 O -0.452 6.452 9 N -0.341 5.341 10 C 0.048 3.952 11 H 0.076 0.924 12 C 0.023 3.977 13 N -0.386 5.386 14 C -0.372 4.372 15 H 0.098 0.902 16 C -0.269 4.269 17 N -0.621 5.621 18 Si 0.804 3.196 19 H -0.216 1.216 20 H -0.225 1.225 21 H -0.191 1.191 22 C -0.110 4.110 23 C -0.156 4.156 24 C -0.153 4.153 25 C -0.157 4.157 26 C -0.159 4.159 27 N -0.107 5.107 28 N -0.081 5.081 29 H 0.308 0.692 30 H 0.077 0.923 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.180 0.820 38 H 0.244 0.756 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.203 0.797 42 H 0.058 0.942 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.098 0.902 49 H 0.080 0.920 50 H 0.091 0.909 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.682 -17.395 2.735 22.299 hybrid contribution -0.230 1.356 0.239 1.396 sum -13.912 -16.039 2.974 21.440 Atomic orbital electron populations 1.21759 0.94108 1.02298 1.02621 1.21506 0.96848 0.94858 1.02388 1.20390 0.83318 0.99056 1.05753 1.21837 0.96407 1.04542 0.86088 1.21667 0.90004 1.10272 1.00846 1.21844 0.95269 1.11769 0.90593 1.17223 0.82594 0.75637 0.86149 1.90715 1.87449 1.52614 1.14383 1.45781 1.04822 1.70834 1.12659 1.21174 0.83169 0.96251 0.94618 0.92367 1.21172 0.95024 0.84053 0.97448 1.42565 1.21883 1.05804 1.68376 1.19631 0.99017 0.91529 1.27058 0.90183 1.25598 0.99476 0.98456 1.03349 1.69863 1.26498 1.12283 1.53406 0.85118 0.78046 0.78318 0.78129 1.21600 1.22458 1.19092 1.22012 0.98544 0.92751 0.97652 1.22464 0.99182 0.98009 0.95959 1.22469 0.95741 0.97380 0.99744 1.22335 0.97360 0.98623 0.97350 1.22222 0.94208 1.00644 0.98788 1.73542 1.03198 1.19316 1.14662 1.43407 1.02069 1.51656 1.10924 0.69244 0.92338 0.91737 0.92124 0.92276 0.91929 0.88132 0.88147 0.82047 0.75584 0.94100 0.93894 0.79700 0.94223 0.91865 0.91606 0.92242 0.90821 0.90644 0.90162 0.91960 0.90926 0.92174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.18 9.91 71.98 0.71 -0.46 16 2 C -0.12 -1.24 5.92 30.60 0.18 -1.06 16 3 C -0.05 -0.52 5.77 29.85 0.17 -0.35 16 4 C 0.04 0.76 6.48 41.40 0.27 1.03 16 5 C -0.20 -5.58 10.73 22.41 0.24 -5.33 16 6 C -0.04 -1.20 7.13 42.46 0.30 -0.90 16 7 C 0.60 23.55 7.74 86.74 0.67 24.22 16 8 O -0.57 -25.32 16.61 -3.92 -0.07 -25.38 16 9 N -0.69 -26.09 4.31 -445.55 -1.92 -28.01 16 10 C 0.15 5.67 1.82 44.99 0.08 5.75 16 11 H 0.06 2.50 7.61 -2.39 -0.02 2.48 16 12 C 0.15 6.06 5.24 86.38 0.45 6.51 16 13 N -0.74 -38.73 5.45 -343.45 -1.87 -40.61 16 14 C -0.24 -13.54 9.99 84.04 0.84 -12.71 16 15 H 0.08 4.26 7.83 -2.91 -0.02 4.24 16 16 C -0.08 -4.48 5.50 84.86 0.47 -4.02 16 17 N -0.97 -61.12 13.06 21.65 0.28 -60.84 16 18 Si 0.97 46.81 29.55 68.60 2.03 48.84 16 19 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 20 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 22 C -0.09 -2.68 2.91 -10.07 -0.03 -2.71 16 23 C -0.12 -3.11 5.84 31.69 0.18 -2.92 16 24 C -0.12 -2.43 6.91 31.91 0.22 -2.21 16 25 C -0.12 -2.61 6.83 31.67 0.22 -2.39 16 26 C -0.12 -3.16 5.93 31.32 0.19 -2.97 16 27 N -0.27 -8.19 11.93 -48.18 -0.57 -8.77 16 28 N -0.36 -7.66 6.83 -47.93 -0.33 -7.99 16 29 H 0.46 5.89 8.96 -219.99 -1.97 3.92 16 30 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.06 0.65 8.14 -2.38 -0.02 0.64 16 35 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 37 H 0.16 4.28 8.06 -2.91 -0.02 4.26 16 38 H 0.41 15.51 8.31 -92.71 -0.77 14.74 16 39 H 0.04 1.60 5.98 -2.38 -0.01 1.59 16 40 H 0.04 1.72 6.41 -2.39 -0.02 1.71 16 41 H 0.37 21.34 7.43 -92.71 -0.69 20.65 16 42 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 43 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 44 H 0.07 1.87 5.68 -2.39 -0.01 1.86 16 45 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 46 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 47 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 48 H 0.08 1.45 8.14 -2.39 -0.02 1.44 16 49 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 50 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.06 1.75 6.17 -2.39 -0.01 1.73 16 Total: -1.00 -74.63 408.48 0.24 -74.39 By element: Atomic # 1 Polarization: 51.35 SS G_CDS: -2.48 Total: 48.88 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: 5.17 Total: -0.51 kcal Atomic # 7 Polarization: -141.79 SS G_CDS: -4.41 Total: -146.21 kcal Atomic # 8 Polarization: -25.32 SS G_CDS: -0.07 Total: -25.38 kcal Atomic # 14 Polarization: 46.81 SS G_CDS: 2.03 Total: 48.84 kcal Total: -74.63 0.24 -74.39 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699792243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.211 kcal (2) G-P(sol) polarization free energy of solvation -74.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.390 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds