Wall clock time and date at job start Tue Mar 31 2020 19:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46862 * 2 1 4 4 C 1.50703 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.98597 * 270.14514 * 4 3 2 6 6 N 1.39935 * 108.89432 * 180.26131 * 5 4 3 7 7 H 0.97003 * 125.75561 * 179.73022 * 6 5 4 8 8 C 1.34260 * 108.49446 * 359.75043 * 6 5 4 9 9 C 1.38044 * 107.41635 * 359.97438 * 8 6 5 10 10 C 1.47428 * 126.41535 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99862 * 208.91859 * 10 9 8 12 12 N 1.34774 * 120.00068 * 28.92173 * 10 9 8 13 13 C 1.46928 * 120.63180 * 185.10241 * 12 10 9 14 14 C 1.53190 * 108.77901 * 126.36509 * 13 12 10 15 15 C 1.53037 * 109.31134 * 54.63374 * 14 13 12 16 16 C 1.52996 * 109.46170 * 178.62731 * 15 14 13 17 17 C 1.53004 * 109.47099 * 295.90172 * 16 15 14 18 18 N 1.46508 * 109.46018 * 58.65629 * 15 14 13 19 19 C 1.36938 * 119.99614 * 184.36777 * 18 15 14 20 20 H 1.07992 * 120.00285 * 4.60237 * 19 18 15 21 21 C 1.38817 * 119.99441 * 184.60161 * 19 18 15 22 22 N 1.31616 * 119.99806 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47397 * 90.00149 * 23 21 19 25 25 H 1.48506 * 109.46994 * 210.00243 * 23 21 19 26 26 H 1.48504 * 109.47446 * 329.99937 * 23 21 19 27 27 C 1.53043 * 109.52726 * 298.64233 * 15 14 13 28 28 C 1.46925 * 120.63079 * 5.06989 * 12 10 9 29 29 H 1.08998 * 109.46854 * 60.00523 * 1 2 3 30 30 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47626 * 300.00552 * 1 2 3 32 32 H 1.08998 * 109.47075 * 239.99853 * 2 1 3 33 33 H 1.08998 * 109.46854 * 119.99477 * 2 1 3 34 34 H 1.08991 * 109.47703 * 59.99828 * 3 2 1 35 35 H 1.08998 * 109.46959 * 299.99413 * 3 2 1 36 36 H 1.07995 * 126.29294 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.58650 * 6.57314 * 13 12 10 38 38 H 1.09002 * 109.58334 * 246.15706 * 13 12 10 39 39 H 1.09001 * 109.49413 * 294.68352 * 14 13 12 40 40 H 1.08996 * 109.49419 * 174.58373 * 14 13 12 41 41 H 1.08998 * 109.46953 * 55.90143 * 16 15 14 42 42 H 1.09003 * 109.47643 * 175.90032 * 16 15 14 43 43 H 1.09006 * 109.46979 * 182.63287 * 17 16 15 44 44 H 1.08997 * 109.46867 * 302.63373 * 17 16 15 45 45 H 1.08995 * 109.46828 * 62.63690 * 17 16 15 46 46 H 0.96998 * 119.99593 * 4.63718 * 18 15 14 47 47 H 0.97003 * 120.00299 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.49594 * 181.31114 * 27 15 14 49 49 H 1.08994 * 109.49823 * 301.40597 * 27 15 14 50 50 H 1.09004 * 109.58745 * 353.42570 * 28 12 10 51 51 H 1.09007 * 109.58326 * 113.84517 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3130 1.4400 1.0565 6 7 5.6508 1.4471 0.6458 7 1 6.4236 1.4507 1.2320 8 6 5.6842 1.4485 -0.6964 9 6 4.3778 1.4418 -1.1423 10 6 3.9327 1.4411 -2.5477 11 8 2.8675 1.9448 -2.8484 12 7 4.7063 0.8822 -3.4993 13 6 4.3310 0.9714 -4.9171 14 6 5.5101 1.5525 -5.7037 15 6 6.7605 0.7117 -5.4362 16 6 7.9324 1.2687 -6.2470 17 6 7.6344 1.1225 -7.7406 18 7 6.5093 -0.6763 -5.8320 19 6 7.4582 -1.6364 -5.6017 20 1 8.3596 -1.3862 -5.0623 21 6 7.2612 -2.9313 -6.0617 22 7 8.1730 -3.8542 -5.8399 23 14 5.7022 -3.3638 -6.9953 24 1 5.9187 -3.1460 -8.4482 25 1 5.3598 -4.7885 -6.7539 26 1 4.5885 -2.5007 -6.5260 27 6 7.1021 0.7629 -3.9453 28 6 5.9414 0.1728 -3.1388 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.5703 1.4530 -1.3137 37 1 3.4634 1.6222 -5.0252 38 1 4.0939 -0.0230 -5.2954 39 1 5.6879 2.5801 -5.3865 40 1 5.2807 1.5346 -6.7691 41 1 8.0726 2.3224 -6.0059 42 1 8.8393 0.7160 -6.0016 43 1 8.4887 1.4762 -8.3178 44 1 7.4480 0.0740 -7.9729 45 1 6.7543 1.7131 -7.9949 46 1 5.6724 -0.9144 -6.2607 47 1 8.0356 -4.7590 -6.1616 48 1 8.0060 0.1829 -3.7590 49 1 7.2649 1.7978 -3.6447 50 1 6.1363 0.2967 -2.0735 51 1 5.8356 -0.8867 -3.3722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700219679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:06 Heat of formation + Delta-G solvation = 51.076032 kcal Electronic energy + Delta-G solvation = -30786.007894 eV Core-core repulsion = 26915.320740 eV Total energy + Delta-G solvation = -3870.687154 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.63609 -39.70791 -37.91680 -35.42908 -34.72360 -32.66758 -31.68339 -31.59860 -30.57111 -29.86914 -29.31639 -27.18159 -25.37767 -23.65670 -23.23432 -22.49813 -21.98310 -21.25792 -20.39340 -19.44523 -18.20642 -17.80394 -17.52245 -16.54236 -15.54594 -15.38514 -15.04952 -14.75151 -14.56214 -14.45512 -14.16376 -14.12846 -13.68399 -13.55669 -13.30814 -13.15659 -13.04386 -12.75406 -12.45264 -12.18912 -11.94674 -11.76227 -11.58438 -11.46374 -11.33132 -11.27271 -11.07895 -10.97162 -10.80774 -10.67005 -10.64655 -10.49867 -10.14463 -10.12973 -9.76842 -9.63346 -9.49482 -9.43763 -8.99796 -8.78777 -8.21690 -7.28787 -5.81635 -3.16724 1.45936 2.14295 2.58125 3.29122 3.33493 3.36702 3.43490 3.50749 4.37726 4.54719 4.54908 4.92176 4.96346 5.05221 5.06825 5.14359 5.17294 5.27174 5.34093 5.42100 5.48163 5.51350 5.58053 5.65637 5.69239 5.74439 5.83303 5.86040 5.87519 5.98018 5.99932 6.03657 6.07534 6.14727 6.20117 6.25876 6.30452 6.40470 6.41871 6.47650 6.58289 6.66393 6.68549 6.90719 6.96869 6.99243 7.03024 7.44225 7.76670 7.94714 8.37890 8.47657 9.16324 9.89408 10.09714 11.36486 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003801 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.349452 B = 7364.628244 C = 7869.446030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C -0.048 4.048 4 C 0.134 3.866 5 N -0.300 5.300 6 N -0.464 5.464 7 H 0.443 0.557 8 C 0.097 3.903 9 C -0.278 4.278 10 C 0.593 3.407 11 O -0.552 6.552 12 N -0.597 5.597 13 C 0.119 3.881 14 C -0.135 4.135 15 C 0.210 3.790 16 C -0.123 4.123 17 C -0.142 4.142 18 N -0.739 5.739 19 C -0.235 4.235 20 H 0.091 0.909 21 C 0.008 3.992 22 N -0.933 5.933 23 Si 0.877 3.123 24 H -0.285 1.285 25 H -0.294 1.294 26 H -0.278 1.278 27 C -0.136 4.136 28 C 0.095 3.905 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.076 0.924 35 H 0.103 0.897 36 H 0.198 0.802 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.076 0.924 41 H 0.042 0.958 42 H 0.065 0.935 43 H 0.036 0.964 44 H 0.070 0.930 45 H 0.040 0.960 46 H 0.361 0.639 47 H 0.258 0.742 48 H 0.081 0.919 49 H 0.050 0.950 50 H 0.082 0.918 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.208 12.302 9.653 16.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C -0.087 4.087 4 C -0.034 4.034 5 N -0.123 5.123 6 N -0.169 5.169 7 H 0.288 0.712 8 C -0.054 4.054 9 C -0.293 4.293 10 C 0.381 3.619 11 O -0.432 6.432 12 N -0.329 5.329 13 C -0.004 4.004 14 C -0.173 4.173 15 C 0.119 3.881 16 C -0.163 4.163 17 C -0.199 4.199 18 N -0.383 5.383 19 C -0.364 4.364 20 H 0.109 0.891 21 C -0.188 4.188 22 N -0.581 5.581 23 Si 0.708 3.292 24 H -0.212 1.212 25 H -0.220 1.220 26 H -0.204 1.204 27 C -0.176 4.176 28 C -0.027 4.027 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.095 0.905 35 H 0.121 0.879 36 H 0.214 0.786 37 H 0.103 0.897 38 H 0.087 0.913 39 H 0.085 0.915 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.089 0.911 45 H 0.059 0.941 46 H 0.195 0.805 47 H 0.069 0.931 48 H 0.099 0.901 49 H 0.069 0.931 50 H 0.100 0.900 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.532 12.416 10.815 17.714 hybrid contribution -0.204 -0.645 -1.355 1.515 sum -6.735 11.771 9.460 16.535 Atomic orbital electron populations 1.21740 0.95318 1.01699 1.01916 1.21413 0.95998 0.95533 1.02328 1.20246 0.85565 0.98475 1.04420 1.22388 0.96908 0.95347 0.88713 1.77106 0.86339 1.26328 1.22501 1.46138 1.07722 1.57490 1.05524 0.71242 1.23602 0.99471 0.97055 0.85318 1.20265 0.92110 1.22161 0.94771 1.17262 0.83550 0.77522 0.83550 1.90692 1.22623 1.47601 1.82254 1.47906 1.24466 1.54096 1.06462 1.21530 0.97633 1.01694 0.79530 1.22186 0.95531 0.99319 1.00288 1.19465 0.92027 0.85131 0.91506 1.21891 1.00005 0.98450 0.95930 1.21662 0.99323 1.02941 0.95986 1.42863 1.18849 1.03254 1.73296 1.18920 0.99376 0.88389 1.29749 0.89107 1.24621 0.97261 0.96225 1.00689 1.69681 1.34375 1.02647 1.51408 0.86676 0.84459 0.77473 0.80559 1.21207 1.22015 1.20443 1.22279 0.98461 0.99278 0.97537 1.22252 0.83153 0.98303 0.99030 0.92329 0.92674 0.92784 0.91703 0.92052 0.90501 0.87907 0.78584 0.89672 0.91336 0.91520 0.90583 0.93932 0.91668 0.94441 0.91070 0.94132 0.80511 0.93150 0.90056 0.93135 0.89988 0.89270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 37.16 0.37 -1.08 16 2 C -0.11 -1.32 5.92 -26.73 -0.16 -1.48 16 3 C -0.05 -0.59 5.54 -27.88 -0.15 -0.74 16 4 C 0.13 1.84 6.51 -82.02 -0.53 1.31 16 5 N -0.30 -3.90 12.63 33.90 0.43 -3.47 16 6 N -0.46 -4.63 7.29 30.85 0.22 -4.40 16 7 H 0.44 2.76 8.96 -182.72 -1.64 1.12 16 8 C 0.10 1.05 9.75 -16.56 -0.16 0.89 16 9 C -0.28 -3.88 5.68 -105.07 -0.60 -4.47 16 10 C 0.59 9.45 7.57 -12.52 -0.09 9.35 16 11 O -0.55 -10.03 14.73 5.28 0.08 -9.95 16 12 N -0.60 -9.16 2.97 -174.05 -0.52 -9.68 16 13 C 0.12 1.83 6.15 -3.71 -0.02 1.81 16 14 C -0.13 -1.95 4.71 -26.61 -0.13 -2.07 16 15 C 0.21 3.40 0.44 -131.77 -0.06 3.35 16 16 C -0.12 -1.96 4.81 -26.73 -0.13 -2.09 16 17 C -0.14 -2.26 9.43 37.16 0.35 -1.91 16 18 N -0.74 -14.89 2.89 -47.19 -0.14 -15.02 16 19 C -0.23 -5.73 9.11 -15.06 -0.14 -5.87 16 20 H 0.09 2.39 6.97 -52.49 -0.37 2.02 16 21 C 0.01 0.21 5.50 -17.43 -0.10 0.12 16 22 N -0.93 -27.52 13.97 55.49 0.78 -26.74 16 23 Si 0.88 21.01 27.78 -169.99 -4.72 16.29 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.28 -6.27 6.46 56.52 0.37 -5.91 16 27 C -0.14 -1.99 4.50 -26.63 -0.12 -2.11 16 28 C 0.09 1.40 5.58 -3.73 -0.02 1.38 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.10 1.40 6.50 -51.93 -0.34 1.06 16 36 H 0.20 1.66 6.03 -52.49 -0.32 1.35 16 37 H 0.08 1.31 7.04 -51.93 -0.37 0.95 16 38 H 0.07 1.16 7.04 -51.93 -0.37 0.79 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.08 1.06 6.53 -51.93 -0.34 0.72 16 41 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.16 7.77 -51.93 -0.40 0.76 16 43 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.07 1.34 7.40 -51.93 -0.38 0.96 16 45 H 0.04 0.57 6.64 -51.93 -0.34 0.23 16 46 H 0.36 7.51 4.46 -40.82 -0.18 7.33 16 47 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 48 H 0.08 1.30 7.01 -51.93 -0.36 0.94 16 49 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.08 1.01 3.15 -51.93 -0.16 0.85 16 51 H 0.09 1.62 7.60 -51.93 -0.39 1.22 16 LS Contribution 386.87 15.07 5.83 5.83 Total: -1.00 -31.26 386.87 -9.09 -40.35 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -9.36 Total: 10.43 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: -1.69 Total: -3.63 kcal Atomic # 7 Polarization: -60.09 SS G_CDS: 0.77 Total: -59.32 kcal Atomic # 8 Polarization: -10.03 SS G_CDS: 0.08 Total: -9.95 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.72 Total: 16.29 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.26 -9.09 -40.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700219679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.428 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.352 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds