Wall clock time and date at job start Tue Mar 31 2020 19:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46862 * 2 1 4 4 C 1.50703 * 109.46937 * 179.97438 * 3 2 1 5 5 N 1.30448 * 125.98597 * 270.14514 * 4 3 2 6 6 N 1.39935 * 108.89432 * 180.26131 * 5 4 3 7 7 H 0.97003 * 125.75561 * 179.73022 * 6 5 4 8 8 C 1.34260 * 108.49446 * 359.75043 * 6 5 4 9 9 C 1.38044 * 107.41635 * 359.97438 * 8 6 5 10 10 C 1.47428 * 126.41535 * 179.97438 * 9 8 6 11 11 O 1.21603 * 119.99862 * 208.91859 * 10 9 8 12 12 N 1.34774 * 120.00068 * 28.92173 * 10 9 8 13 13 C 1.46928 * 120.63180 * 185.10241 * 12 10 9 14 14 C 1.53190 * 108.77901 * 126.36509 * 13 12 10 15 15 C 1.53037 * 109.31134 * 54.63374 * 14 13 12 16 16 C 1.52996 * 109.46170 * 178.62731 * 15 14 13 17 17 C 1.53004 * 109.47099 * 295.90172 * 16 15 14 18 18 N 1.46508 * 109.46018 * 58.65629 * 15 14 13 19 19 C 1.36938 * 119.99614 * 184.36777 * 18 15 14 20 20 H 1.07992 * 120.00285 * 4.60237 * 19 18 15 21 21 C 1.38817 * 119.99441 * 184.60161 * 19 18 15 22 22 N 1.31616 * 119.99806 * 180.02562 * 21 19 18 23 23 Si 1.86796 * 120.00005 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47397 * 90.00149 * 23 21 19 25 25 H 1.48506 * 109.46994 * 210.00243 * 23 21 19 26 26 H 1.48504 * 109.47446 * 329.99937 * 23 21 19 27 27 C 1.53043 * 109.52726 * 298.64233 * 15 14 13 28 28 C 1.46925 * 120.63079 * 5.06989 * 12 10 9 29 29 H 1.08998 * 109.46854 * 60.00523 * 1 2 3 30 30 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47626 * 300.00552 * 1 2 3 32 32 H 1.08998 * 109.47075 * 239.99853 * 2 1 3 33 33 H 1.08998 * 109.46854 * 119.99477 * 2 1 3 34 34 H 1.08991 * 109.47703 * 59.99828 * 3 2 1 35 35 H 1.08998 * 109.46959 * 299.99413 * 3 2 1 36 36 H 1.07995 * 126.29294 * 180.02562 * 8 6 5 37 37 H 1.09001 * 109.58650 * 6.57314 * 13 12 10 38 38 H 1.09002 * 109.58334 * 246.15706 * 13 12 10 39 39 H 1.09001 * 109.49413 * 294.68352 * 14 13 12 40 40 H 1.08996 * 109.49419 * 174.58373 * 14 13 12 41 41 H 1.08998 * 109.46953 * 55.90143 * 16 15 14 42 42 H 1.09003 * 109.47643 * 175.90032 * 16 15 14 43 43 H 1.09006 * 109.46979 * 182.63287 * 17 16 15 44 44 H 1.08997 * 109.46867 * 302.63373 * 17 16 15 45 45 H 1.08995 * 109.46828 * 62.63690 * 17 16 15 46 46 H 0.96998 * 119.99593 * 4.63718 * 18 15 14 47 47 H 0.97003 * 120.00299 * 180.02562 * 22 21 19 48 48 H 1.09006 * 109.49594 * 181.31114 * 27 15 14 49 49 H 1.08994 * 109.49823 * 301.40597 * 27 15 14 50 50 H 1.09004 * 109.58745 * 353.42570 * 28 12 10 51 51 H 1.09007 * 109.58326 * 113.84517 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4426 0.0006 5 7 4.3130 1.4400 1.0565 6 7 5.6508 1.4471 0.6458 7 1 6.4236 1.4507 1.2320 8 6 5.6842 1.4485 -0.6964 9 6 4.3778 1.4418 -1.1423 10 6 3.9327 1.4411 -2.5477 11 8 2.8675 1.9448 -2.8484 12 7 4.7063 0.8822 -3.4993 13 6 4.3310 0.9714 -4.9171 14 6 5.5101 1.5525 -5.7037 15 6 6.7605 0.7117 -5.4362 16 6 7.9324 1.2687 -6.2470 17 6 7.6344 1.1225 -7.7406 18 7 6.5093 -0.6763 -5.8320 19 6 7.4582 -1.6364 -5.6017 20 1 8.3596 -1.3862 -5.0623 21 6 7.2612 -2.9313 -6.0617 22 7 8.1730 -3.8542 -5.8399 23 14 5.7022 -3.3638 -6.9953 24 1 5.9187 -3.1460 -8.4482 25 1 5.3598 -4.7885 -6.7539 26 1 4.5885 -2.5007 -6.5260 27 6 7.1021 0.7629 -3.9453 28 6 5.9414 0.1728 -3.1388 29 1 -0.3633 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8898 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5137 0.8900 34 1 1.6767 1.9564 0.8899 35 1 1.6767 1.9563 -0.8900 36 1 6.5703 1.4530 -1.3137 37 1 3.4634 1.6222 -5.0252 38 1 4.0939 -0.0230 -5.2954 39 1 5.6879 2.5801 -5.3865 40 1 5.2807 1.5346 -6.7691 41 1 8.0726 2.3224 -6.0059 42 1 8.8393 0.7160 -6.0016 43 1 8.4887 1.4762 -8.3178 44 1 7.4480 0.0740 -7.9729 45 1 6.7543 1.7131 -7.9949 46 1 5.6724 -0.9144 -6.2607 47 1 8.0356 -4.7590 -6.1616 48 1 8.0060 0.1829 -3.7590 49 1 7.2649 1.7978 -3.6447 50 1 6.1363 0.2967 -2.0735 51 1 5.8356 -0.8867 -3.3722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700219679.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:04 Heat of formation + Delta-G solvation = 31.730749 kcal Electronic energy + Delta-G solvation = -30786.846769 eV Core-core repulsion = 26915.320740 eV Total energy + Delta-G solvation = -3871.526029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.62257 -40.94454 -39.23716 -36.49947 -35.94753 -34.46576 -32.77760 -32.59551 -32.10398 -31.30719 -30.49881 -28.07978 -26.68557 -25.28680 -24.55315 -23.66330 -22.93982 -22.39900 -21.52385 -20.45023 -19.68987 -19.51630 -18.65761 -17.72711 -16.70815 -16.51951 -16.33009 -16.14431 -15.83944 -15.60431 -15.44490 -15.28459 -15.05337 -14.80849 -14.56169 -14.43914 -14.17581 -14.16152 -13.89457 -13.37827 -13.11106 -12.94250 -12.88857 -12.86180 -12.56063 -12.47812 -12.31873 -12.19680 -12.13078 -11.94451 -11.92972 -11.68029 -11.64101 -11.54574 -11.46482 -10.93281 -10.85402 -10.75654 -10.46691 -9.87315 -9.48441 -9.09964 -7.89898 -5.18490 0.51641 1.09314 1.40564 1.41080 1.47696 1.74505 2.12019 2.36277 2.55925 3.40638 3.43882 3.61235 3.66796 3.83805 3.92904 4.06246 4.11295 4.14563 4.17168 4.25893 4.31929 4.35653 4.46740 4.57487 4.61290 4.64167 4.73116 4.77799 4.80746 4.84431 4.86423 4.92037 4.97699 5.07712 5.10588 5.17212 5.22850 5.28551 5.31702 5.37211 5.38305 5.40096 5.43606 5.61395 5.66661 5.74637 5.96603 6.23650 6.35391 6.46837 6.59738 7.22467 7.26486 8.00734 8.17517 9.31830 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003801 C = 0.003557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.349452 B = 7364.628244 C = 7869.446030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 C -0.046 4.046 4 C 0.122 3.878 5 N -0.315 5.315 6 N -0.446 5.446 7 H 0.461 0.539 8 C 0.118 3.882 9 C -0.311 4.311 10 C 0.593 3.407 11 O -0.580 6.580 12 N -0.597 5.597 13 C 0.118 3.882 14 C -0.124 4.124 15 C 0.199 3.801 16 C -0.119 4.119 17 C -0.140 4.140 18 N -0.739 5.739 19 C -0.185 4.185 20 H 0.071 0.929 21 C -0.061 4.061 22 N -0.986 5.986 23 Si 0.930 3.070 24 H -0.287 1.287 25 H -0.310 1.310 26 H -0.258 1.258 27 C -0.131 4.131 28 C 0.102 3.898 29 H 0.052 0.948 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.041 0.959 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.226 0.774 37 H 0.086 0.914 38 H 0.049 0.951 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.075 0.925 42 H 0.040 0.960 43 H 0.047 0.953 44 H 0.035 0.965 45 H 0.061 0.939 46 H 0.359 0.641 47 H 0.250 0.750 48 H 0.066 0.934 49 H 0.086 0.914 50 H 0.109 0.891 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.418 14.965 10.602 19.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.045 4.045 5 N -0.138 5.138 6 N -0.152 5.152 7 H 0.309 0.691 8 C -0.035 4.035 9 C -0.326 4.326 10 C 0.383 3.617 11 O -0.462 6.462 12 N -0.328 5.328 13 C -0.005 4.005 14 C -0.162 4.162 15 C 0.110 3.890 16 C -0.158 4.158 17 C -0.197 4.197 18 N -0.382 5.382 19 C -0.317 4.317 20 H 0.089 0.911 21 C -0.252 4.252 22 N -0.638 5.638 23 Si 0.761 3.239 24 H -0.214 1.214 25 H -0.238 1.238 26 H -0.183 1.183 27 C -0.170 4.170 28 C -0.020 4.020 29 H 0.072 0.928 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.060 0.940 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.105 0.895 36 H 0.242 0.758 37 H 0.104 0.896 38 H 0.068 0.932 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.094 0.906 42 H 0.059 0.941 43 H 0.067 0.933 44 H 0.054 0.946 45 H 0.080 0.920 46 H 0.193 0.807 47 H 0.059 0.941 48 H 0.085 0.915 49 H 0.105 0.895 50 H 0.126 0.874 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.751 15.148 11.794 20.350 hybrid contribution -0.082 -1.342 -1.570 2.067 sum -6.833 13.805 10.224 18.488 Atomic orbital electron populations 1.21721 0.93874 1.02301 1.02437 1.21356 0.97258 0.94961 1.01193 1.20219 0.85332 0.98680 1.04248 1.22577 0.97526 0.95526 0.88899 1.77066 0.87448 1.26805 1.22494 1.46174 1.07567 1.55785 1.05667 0.69059 1.23863 0.99137 0.94821 0.85685 1.20251 0.93620 1.24931 0.93803 1.17526 0.83042 0.76868 0.84284 1.90673 1.23786 1.48886 1.82807 1.47916 1.24527 1.53962 1.06400 1.21493 0.98333 1.00752 0.79892 1.22117 0.93662 0.99762 1.00660 1.19814 0.93477 0.83073 0.92611 1.21843 0.98313 0.99983 0.95701 1.21628 1.00827 1.01029 0.96247 1.42919 1.17763 1.04484 1.73034 1.18870 0.98516 0.88553 1.25715 0.91106 1.25173 0.99875 0.96787 1.03334 1.69830 1.36700 1.02768 1.54537 0.85784 0.82397 0.76415 0.79317 1.21446 1.23812 1.18339 1.22225 0.97492 1.01184 0.96129 1.22168 0.83069 0.96082 1.00695 0.92845 0.92048 0.91209 0.94034 0.91844 0.89082 0.89513 0.75848 0.89559 0.93244 0.89237 0.89822 0.90642 0.94149 0.93349 0.94591 0.92017 0.80723 0.94115 0.91494 0.89534 0.87385 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.71 9.91 71.98 0.71 -2.00 16 2 C -0.11 -2.49 5.92 30.60 0.18 -2.31 16 3 C -0.05 -1.09 5.54 29.85 0.17 -0.93 16 4 C 0.12 3.19 6.51 43.52 0.28 3.48 16 5 N -0.32 -7.53 12.63 -46.67 -0.59 -8.12 16 6 N -0.45 -7.52 7.29 -56.32 -0.41 -7.93 16 7 H 0.46 4.12 8.96 -213.42 -1.91 2.20 16 8 C 0.12 2.18 9.75 84.28 0.82 3.00 16 9 C -0.31 -8.11 5.68 -20.15 -0.11 -8.23 16 10 C 0.59 18.12 7.57 86.66 0.66 18.78 16 11 O -0.58 -20.75 14.73 -4.04 -0.06 -20.81 16 12 N -0.60 -17.28 2.97 -822.84 -2.45 -19.72 16 13 C 0.12 3.45 6.15 86.36 0.53 3.98 16 14 C -0.12 -3.18 4.71 30.67 0.14 -3.03 16 15 C 0.20 6.00 0.44 3.63 0.00 6.00 16 16 C -0.12 -3.46 4.81 30.59 0.15 -3.31 16 17 C -0.14 -4.14 9.43 71.98 0.68 -3.47 16 18 N -0.74 -29.16 2.89 -303.21 -0.88 -30.04 16 19 C -0.19 -9.13 9.11 84.03 0.77 -8.37 16 20 H 0.07 3.78 6.97 -2.91 -0.02 3.76 16 21 C -0.06 -3.35 5.50 84.86 0.47 -2.89 16 22 N -0.99 -60.24 13.97 21.65 0.30 -59.94 16 23 Si 0.93 44.36 27.78 68.60 1.91 46.26 16 24 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 25 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 26 H -0.26 -11.24 6.46 99.48 0.64 -10.60 16 27 C -0.13 -3.47 4.50 30.66 0.14 -3.33 16 28 C 0.10 2.82 5.58 86.35 0.48 3.30 16 29 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 35 H 0.09 2.37 6.50 -2.39 -0.02 2.35 16 36 H 0.23 2.77 6.03 -2.91 -0.02 2.75 16 37 H 0.09 2.53 7.04 -2.39 -0.02 2.51 16 38 H 0.05 1.63 7.04 -2.39 -0.02 1.61 16 39 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.08 2.06 6.53 -2.39 -0.02 2.04 16 41 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.04 1.37 7.77 -2.39 -0.02 1.36 16 43 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 44 H 0.03 1.31 7.40 -2.39 -0.02 1.29 16 45 H 0.06 1.55 6.64 -2.39 -0.02 1.54 16 46 H 0.36 14.60 4.46 -92.71 -0.41 14.19 16 47 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 48 H 0.07 2.02 7.01 -2.38 -0.02 2.00 16 49 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.11 2.37 3.15 -2.38 -0.01 2.37 16 51 H 0.05 1.85 7.60 -2.38 -0.02 1.83 16 Total: -1.00 -70.38 386.87 2.46 -67.92 By element: Atomic # 1 Polarization: 33.11 SS G_CDS: -1.43 Total: 31.68 kcal Atomic # 6 Polarization: -5.36 SS G_CDS: 6.06 Total: 0.70 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -4.02 Total: -125.75 kcal Atomic # 8 Polarization: -20.75 SS G_CDS: -0.06 Total: -20.81 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.91 Total: 46.26 kcal Total: -70.38 2.46 -67.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700219679.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.656 kcal (2) G-P(sol) polarization free energy of solvation -70.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.925 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds