Wall clock time and date at job start Tue Mar 31 2020 20:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.50694 * 109.47371 * 85.01751 * 9 8 4 11 11 O 1.21287 * 120.00054 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99713 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00517 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.46680 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.47103 * 240.00200 * 14 12 10 17 17 N 1.46500 * 109.47435 * 54.99838 * 16 14 12 18 18 C 1.36932 * 120.00065 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00355 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00247 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99804 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46960 * 89.99577 * 22 20 18 24 24 H 1.48497 * 109.46844 * 209.99591 * 22 20 18 25 25 H 1.48496 * 109.47059 * 329.99971 * 22 20 18 26 26 C 1.52996 * 109.47501 * 119.99756 * 14 12 10 27 27 C 1.53002 * 117.50283 * 248.75148 * 26 14 12 28 28 C 1.52996 * 117.50059 * 180.08724 * 26 14 12 29 29 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 32 32 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 33 33 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 35 35 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 36 36 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 37 37 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 38 38 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 39 39 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 40 40 H 1.08998 * 109.47205 * 90.00078 * 13 12 10 41 41 H 1.09004 * 109.47214 * 210.00154 * 13 12 10 42 42 H 1.08998 * 109.47116 * 329.99683 * 13 12 10 43 43 H 1.09007 * 109.47026 * 174.99758 * 16 14 12 44 44 H 1.09003 * 109.46680 * 294.99529 * 16 14 12 45 45 H 0.97004 * 119.99746 * 359.97438 * 17 16 14 46 46 H 0.97000 * 119.99945 * 179.97438 * 21 20 18 47 47 H 1.09003 * 115.54532 * 34.41657 * 26 14 12 48 48 H 1.08999 * 117.49416 * 359.97438 * 27 26 14 49 49 H 1.08999 * 117.50392 * 145.01580 * 27 26 14 50 50 H 1.09001 * 117.49984 * 214.97496 * 28 26 14 51 51 H 1.09001 * 117.49872 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.5913 -1.8767 -0.4094 11 8 5.0318 -0.9092 0.1745 12 7 5.2405 -2.3690 -1.4831 13 6 4.7087 -3.5379 -2.1881 14 6 6.4778 -1.7352 -1.9452 15 1 6.7140 -0.8876 -1.3018 16 6 6.2945 -1.2475 -3.3837 17 7 5.1253 -0.3677 -3.4560 18 6 4.7626 0.1922 -4.6518 19 1 5.3387 -0.0144 -5.5416 20 6 3.6544 1.0254 -4.7204 21 7 3.3061 1.5639 -5.8697 22 14 2.6584 1.3833 -3.1811 23 1 3.2094 2.5841 -2.5031 24 1 1.2426 1.6314 -3.5542 25 1 2.7315 0.2190 -2.2623 26 6 7.6213 -2.7503 -1.8925 27 6 8.7208 -2.5227 -0.8532 28 6 9.0068 -2.2773 -2.3368 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.3582 -1.1916 4.3748 37 1 3.6267 -2.9668 2.9151 38 1 3.5200 -3.5667 0.3326 39 1 2.5742 -2.4959 -0.7292 40 1 4.0311 -3.2097 -2.9763 41 1 5.5311 -4.1024 -2.6277 42 1 4.1682 -4.1716 -1.4849 43 1 7.1824 -0.6982 -3.6970 44 1 6.1461 -2.1039 -4.0415 45 1 4.6077 -0.1824 -2.6568 46 1 2.5315 2.1458 -5.9176 47 1 7.3456 -3.7809 -2.1161 48 1 8.6296 -1.6495 -0.2072 49 1 9.1688 -3.4035 -0.3932 50 1 9.6429 -2.9969 -2.8523 51 1 9.1036 -1.2430 -2.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700731513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:42 Heat of formation + Delta-G solvation = 79.069626 kcal Electronic energy + Delta-G solvation = -31269.162972 eV Core-core repulsion = 27399.689710 eV Total energy + Delta-G solvation = -3869.473261 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.16228 -40.09126 -37.79689 -35.44614 -35.28688 -34.37562 -33.88904 -31.50288 -29.35680 -28.74039 -27.52037 -27.04494 -26.68982 -24.23096 -22.79295 -22.50358 -21.54374 -21.38774 -20.68868 -19.44308 -18.81712 -17.70940 -17.65935 -17.08588 -16.46336 -15.84651 -15.31359 -14.98407 -14.69476 -14.38840 -14.18323 -14.16185 -13.84216 -13.63326 -13.54283 -13.29803 -13.04505 -12.76503 -12.74326 -12.66800 -12.46095 -12.18847 -12.01862 -11.70888 -11.63658 -11.41630 -11.26718 -11.12279 -11.04700 -10.90182 -10.64090 -10.50675 -10.21996 -10.04612 -9.91720 -9.83538 -9.60074 -9.36688 -8.93281 -8.59335 -8.24841 -7.27957 -5.78297 -3.16455 1.99655 2.49079 2.58885 3.05216 3.27225 3.27815 3.38572 3.43523 3.76568 4.29512 4.43292 4.45034 4.54978 4.58811 4.73071 4.77089 4.85868 4.91151 5.03595 5.10793 5.15650 5.26402 5.33507 5.38331 5.46028 5.54791 5.59507 5.60693 5.62856 5.71380 5.76902 5.81649 5.81713 5.89023 5.92741 6.02303 6.06665 6.10667 6.11129 6.23638 6.27782 6.42201 6.48514 6.52088 6.68565 6.84759 7.15524 7.33298 7.94173 8.07824 8.22036 8.37856 9.16821 9.89449 10.09265 11.37464 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.006380 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.390583 B = 4387.347328 C = 6936.153357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.020 4.020 3 C -0.141 4.141 4 C 0.238 3.762 5 N -0.488 5.488 6 C -0.028 4.028 7 C -0.057 4.057 8 N -0.441 5.441 9 C 0.084 3.916 10 C 0.498 3.502 11 O -0.519 6.519 12 N -0.592 5.592 13 C 0.071 3.929 14 C 0.159 3.841 15 H 0.101 0.899 16 C 0.153 3.847 17 N -0.751 5.751 18 C -0.245 4.245 19 H 0.089 0.911 20 C 0.000 4.000 21 N -0.933 5.933 22 Si 0.888 3.112 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.272 1.272 26 C -0.161 4.161 27 C -0.178 4.178 28 C -0.167 4.167 29 H 0.063 0.937 30 H 0.053 0.947 31 H 0.068 0.932 32 H 0.088 0.912 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.167 0.833 37 H 0.170 0.830 38 H 0.121 0.879 39 H 0.121 0.879 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.107 0.893 48 H 0.094 0.906 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.302 -14.479 12.889 19.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.040 4.040 3 C -0.199 4.199 4 C -0.024 4.024 5 N -0.206 5.206 6 C -0.175 4.175 7 C -0.189 4.189 8 N -0.123 5.123 9 C -0.043 4.043 10 C 0.283 3.717 11 O -0.394 6.394 12 N -0.325 5.325 13 C -0.072 4.072 14 C 0.056 3.944 15 H 0.119 0.881 16 C 0.025 3.975 17 N -0.397 5.397 18 C -0.375 4.375 19 H 0.107 0.893 20 C -0.195 4.195 21 N -0.581 5.581 22 Si 0.720 3.280 23 H -0.211 1.211 24 H -0.218 1.218 25 H -0.199 1.199 26 C -0.180 4.180 27 C -0.215 4.215 28 C -0.205 4.205 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.185 0.815 37 H 0.187 0.813 38 H 0.139 0.861 39 H 0.139 0.861 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.195 0.805 46 H 0.069 0.931 47 H 0.125 0.875 48 H 0.113 0.887 49 H 0.109 0.891 50 H 0.114 0.886 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 2.117 -13.307 13.094 18.789 hybrid contribution -0.084 -0.611 0.646 0.893 sum 2.034 -13.918 13.740 19.663 Atomic orbital electron populations 1.21789 0.93117 1.01957 1.02848 1.19828 0.96552 0.96359 0.91310 1.21862 1.01937 0.94015 1.02070 1.23175 0.95899 0.87812 0.95535 1.70192 1.24865 1.26653 0.98906 1.22190 1.01522 0.94449 0.99377 1.22540 1.08428 1.05306 0.82620 1.44888 1.38308 1.23356 1.05784 1.21747 0.96330 0.97128 0.89080 1.20553 0.85565 0.84745 0.80799 1.90773 1.66795 1.26014 1.55864 1.47634 1.25118 1.31012 1.28772 1.21878 1.00358 0.87276 0.97643 1.21023 0.81271 0.94301 0.97788 0.88102 1.20908 0.91324 0.93588 0.91680 1.42620 1.31384 1.57066 1.08637 1.19013 1.09359 1.21962 0.87150 0.89305 1.24762 0.98626 0.99473 0.96665 1.69716 1.28666 1.36091 1.23610 0.86689 0.79862 0.78687 0.82812 1.21141 1.21775 1.19890 1.22502 0.90101 1.00115 1.05291 1.23023 1.02847 1.03283 0.92388 1.22948 0.97463 1.03009 0.97070 0.91770 0.92798 0.91270 0.89443 0.91954 0.92499 0.91220 0.81543 0.81291 0.86141 0.86129 0.90996 0.90391 0.91725 0.94381 0.95145 0.80533 0.93130 0.87511 0.88748 0.89080 0.88618 0.88167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.18 37.16 0.34 -1.63 16 2 C -0.02 -0.34 3.02 -91.77 -0.28 -0.62 16 3 C -0.14 -2.57 7.40 37.16 0.28 -2.29 16 4 C 0.24 3.95 6.40 -155.42 -0.99 2.96 16 5 N -0.49 -8.31 11.25 -10.82 -0.12 -8.43 16 6 C -0.03 -0.40 11.87 -17.81 -0.21 -0.61 16 7 C -0.06 -0.74 11.58 -16.56 -0.19 -0.93 16 8 N -0.44 -6.37 2.24 -115.18 -0.26 -6.62 16 9 C 0.08 1.01 4.72 -5.19 -0.02 0.98 16 10 C 0.50 7.63 7.45 -10.99 -0.08 7.55 16 11 O -0.52 -10.17 15.75 5.55 0.09 -10.08 16 12 N -0.59 -8.16 2.24 -173.93 -0.39 -8.55 16 13 C 0.07 0.72 9.38 59.85 0.56 1.28 16 14 C 0.16 2.40 2.42 -67.93 -0.16 2.24 16 15 H 0.10 1.80 6.66 -51.93 -0.35 1.45 16 16 C 0.15 2.79 5.32 -4.04 -0.02 2.77 16 17 N -0.75 -17.37 5.24 -59.91 -0.31 -17.69 16 18 C -0.25 -6.80 10.47 -15.06 -0.16 -6.96 16 19 H 0.09 2.64 8.06 -52.49 -0.42 2.21 16 20 C 0.00 0.01 5.50 -17.43 -0.10 -0.09 16 21 N -0.93 -29.11 13.97 55.49 0.78 -28.34 16 22 Si 0.89 22.17 23.40 -169.99 -3.98 18.19 16 23 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 25 H -0.27 -6.11 3.96 56.52 0.22 -5.89 16 26 C -0.16 -1.86 5.15 -90.62 -0.47 -2.33 16 27 C -0.18 -1.93 10.18 -26.69 -0.27 -2.20 16 28 C -0.17 -1.80 9.80 -26.69 -0.26 -2.06 16 29 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.09 1.53 4.67 -51.93 -0.24 1.28 16 33 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 34 H 0.06 1.05 5.31 -51.93 -0.28 0.78 16 35 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.17 1.86 8.06 -52.48 -0.42 1.44 16 37 H 0.17 1.59 8.06 -52.49 -0.42 1.16 16 38 H 0.12 0.95 7.39 -51.93 -0.38 0.56 16 39 H 0.12 1.34 7.25 -51.92 -0.38 0.96 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 0.67 6.43 -51.93 -0.33 0.34 16 42 H 0.06 0.44 6.44 -51.93 -0.33 0.10 16 43 H 0.04 0.72 7.48 -51.93 -0.39 0.33 16 44 H 0.03 0.54 7.84 -51.93 -0.41 0.14 16 45 H 0.36 8.49 4.93 -40.82 -0.20 8.29 16 46 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 47 H 0.11 1.07 6.59 -51.93 -0.34 0.73 16 48 H 0.09 1.14 8.05 -51.93 -0.42 0.72 16 49 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 50 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 51 H 0.10 1.17 7.67 -51.93 -0.40 0.77 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -35.73 396.40 -8.68 -44.41 By element: Atomic # 1 Polarization: 21.47 SS G_CDS: -8.41 Total: 13.06 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: -2.04 Total: -1.92 kcal Atomic # 7 Polarization: -69.32 SS G_CDS: -0.31 Total: -69.63 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.09 Total: -10.08 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -3.98 Total: 18.19 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.73 -8.68 -44.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700731513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.475 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.678 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds