Wall clock time and date at job start Tue Mar 31 2020 20:08:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46850 * 2 1 4 4 C 1.50696 * 109.47117 * 120.00104 * 2 1 3 5 5 N 1.30498 * 125.65039 * 300.02236 * 4 2 1 6 6 C 1.34129 * 109.25671 * 179.73373 * 5 4 2 7 7 C 1.34666 * 108.02165 * 0.40230 * 6 5 4 8 8 N 1.35047 * 125.65399 * 119.99774 * 4 2 1 9 9 C 1.46507 * 126.39328 * 0.02641 * 8 4 2 10 10 C 1.50694 * 109.47371 * 85.01751 * 9 8 4 11 11 O 1.21287 * 120.00054 * 0.02562 * 10 9 8 12 12 N 1.34773 * 120.00160 * 179.97438 * 10 9 8 13 13 C 1.46506 * 119.99713 * 0.02562 * 12 10 9 14 14 C 1.46498 * 120.00517 * 180.02562 * 12 10 9 15 15 H 1.09003 * 109.46680 * 359.97438 * 14 12 10 16 16 C 1.52999 * 109.47103 * 240.00200 * 14 12 10 17 17 N 1.46500 * 109.47435 * 54.99838 * 16 14 12 18 18 C 1.36932 * 120.00065 * 180.02562 * 17 16 14 19 19 H 1.07998 * 120.00355 * 359.97438 * 18 17 16 20 20 C 1.38814 * 120.00118 * 179.97438 * 18 17 16 21 21 N 1.31617 * 120.00247 * 179.97438 * 20 18 17 22 22 Si 1.86807 * 119.99804 * 0.02562 * 20 18 17 23 23 H 1.48495 * 109.46960 * 89.99577 * 22 20 18 24 24 H 1.48497 * 109.46844 * 209.99591 * 22 20 18 25 25 H 1.48496 * 109.47059 * 329.99971 * 22 20 18 26 26 C 1.52996 * 109.47501 * 119.99756 * 14 12 10 27 27 C 1.53002 * 117.50283 * 248.75148 * 26 14 12 28 28 C 1.52996 * 117.50059 * 180.08724 * 26 14 12 29 29 H 1.09000 * 109.47450 * 59.99883 * 1 2 3 30 30 H 1.09005 * 109.47013 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47224 * 299.99697 * 1 2 3 32 32 H 1.09000 * 109.46769 * 240.00023 * 2 1 3 33 33 H 1.09004 * 109.46655 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.47289 * 299.99328 * 3 2 1 35 35 H 1.09000 * 109.47415 * 60.00418 * 3 2 1 36 36 H 1.08003 * 125.99108 * 180.25065 * 6 5 4 37 37 H 1.08002 * 126.59556 * 179.87817 * 7 6 5 38 38 H 1.09000 * 109.46583 * 205.02344 * 9 8 4 39 39 H 1.09008 * 109.46472 * 325.01713 * 9 8 4 40 40 H 1.08998 * 109.47205 * 90.00078 * 13 12 10 41 41 H 1.09004 * 109.47214 * 210.00154 * 13 12 10 42 42 H 1.08998 * 109.47116 * 329.99683 * 13 12 10 43 43 H 1.09007 * 109.47026 * 174.99758 * 16 14 12 44 44 H 1.09003 * 109.46680 * 294.99529 * 16 14 12 45 45 H 0.97004 * 119.99746 * 359.97438 * 17 16 14 46 46 H 0.97000 * 119.99945 * 179.97438 * 21 20 18 47 47 H 1.09003 * 115.54532 * 34.41657 * 26 14 12 48 48 H 1.08999 * 117.49416 * 359.97438 * 27 26 14 49 49 H 1.08999 * 117.50392 * 145.01580 * 27 26 14 50 50 H 1.09001 * 117.49984 * 214.97496 * 28 26 14 51 51 H 1.09001 * 117.49872 * 359.97438 * 28 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.7856 -0.3623 2.4637 6 6 2.3883 -1.2246 3.2957 7 6 3.0403 -2.1367 2.5498 8 7 2.8120 -1.8131 1.2396 9 6 3.3189 -2.5290 0.0662 10 6 4.5913 -1.8767 -0.4094 11 8 5.0318 -0.9092 0.1745 12 7 5.2405 -2.3690 -1.4831 13 6 4.7087 -3.5379 -2.1881 14 6 6.4778 -1.7352 -1.9452 15 1 6.7140 -0.8876 -1.3018 16 6 6.2945 -1.2475 -3.3837 17 7 5.1253 -0.3677 -3.4560 18 6 4.7626 0.1922 -4.6518 19 1 5.3387 -0.0144 -5.5416 20 6 3.6544 1.0254 -4.7204 21 7 3.3061 1.5639 -5.8697 22 14 2.6584 1.3833 -3.1811 23 1 3.2094 2.5841 -2.5031 24 1 1.2426 1.6314 -3.5542 25 1 2.7315 0.2190 -2.2623 26 6 7.6213 -2.7503 -1.8925 27 6 8.7208 -2.5227 -0.8532 28 6 9.0068 -2.2773 -2.3368 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9564 0.8900 36 1 2.3582 -1.1916 4.3748 37 1 3.6267 -2.9668 2.9151 38 1 3.5200 -3.5667 0.3326 39 1 2.5742 -2.4959 -0.7292 40 1 4.0311 -3.2097 -2.9763 41 1 5.5311 -4.1024 -2.6277 42 1 4.1682 -4.1716 -1.4849 43 1 7.1824 -0.6982 -3.6970 44 1 6.1461 -2.1039 -4.0415 45 1 4.6077 -0.1824 -2.6568 46 1 2.5315 2.1458 -5.9176 47 1 7.3456 -3.7809 -2.1161 48 1 8.6296 -1.6495 -0.2072 49 1 9.1688 -3.4035 -0.3932 50 1 9.6429 -2.9969 -2.8523 51 1 9.1036 -1.2430 -2.6671 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700731513.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:08:40 Heat of formation + Delta-G solvation = 55.686736 kcal Electronic energy + Delta-G solvation = -31270.176930 eV Core-core repulsion = 27399.689710 eV Total energy + Delta-G solvation = -3870.487219 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -43.22439 -41.22915 -38.89299 -36.74203 -36.52859 -35.92509 -35.02293 -33.50036 -30.75938 -29.84745 -28.59546 -28.32435 -27.74918 -25.84384 -24.00279 -23.69453 -22.88167 -22.46939 -21.74052 -20.70913 -19.99439 -19.57331 -18.73278 -18.22757 -17.52506 -16.94538 -16.85327 -16.22214 -16.06558 -15.75193 -15.48516 -15.39341 -15.21372 -14.91453 -14.75469 -14.40673 -14.28406 -14.07570 -13.99520 -13.79016 -13.64661 -13.46125 -13.20630 -13.13393 -13.04436 -12.84273 -12.59179 -12.40717 -12.34725 -12.26208 -12.20034 -11.87399 -11.68062 -11.50434 -11.26799 -11.04509 -10.98046 -10.94732 -10.47124 -9.71400 -9.34405 -9.29614 -8.05291 -5.39963 0.93033 1.22697 1.35146 1.36170 1.39278 1.61087 2.02503 2.18100 2.41271 2.83598 3.24498 3.28508 3.31626 3.45550 3.59635 3.66051 3.90553 3.92727 3.94416 3.99412 4.02397 4.03675 4.19940 4.20674 4.31325 4.35853 4.48459 4.48828 4.53826 4.61662 4.69790 4.73489 4.76308 4.79200 4.83907 4.87352 4.96506 5.02785 5.03635 5.05355 5.16849 5.20225 5.26097 5.34207 5.49799 5.71286 5.85724 6.07496 6.15587 6.28927 6.97783 7.02266 7.13685 7.78936 7.96476 9.13222 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008528 B = 0.006380 C = 0.004036 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3282.390583 B = 4387.347328 C = 6936.153357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.020 4.020 3 C -0.137 4.137 4 C 0.212 3.788 5 N -0.516 5.516 6 C -0.053 4.053 7 C -0.042 4.042 8 N -0.443 5.443 9 C 0.083 3.917 10 C 0.490 3.510 11 O -0.572 6.572 12 N -0.591 5.591 13 C 0.062 3.938 14 C 0.169 3.831 15 H 0.067 0.933 16 C 0.151 3.849 17 N -0.753 5.753 18 C -0.227 4.227 19 H 0.063 0.937 20 C -0.063 4.063 21 N -0.979 5.979 22 Si 0.946 3.054 23 H -0.302 1.302 24 H -0.289 1.289 25 H -0.241 1.241 26 C -0.160 4.160 27 C -0.171 4.171 28 C -0.167 4.167 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.078 0.922 33 H 0.033 0.967 34 H 0.048 0.952 35 H 0.076 0.924 36 H 0.189 0.811 37 H 0.209 0.791 38 H 0.172 0.828 39 H 0.132 0.868 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.107 0.893 43 H 0.030 0.970 44 H 0.045 0.955 45 H 0.361 0.639 46 H 0.256 0.744 47 H 0.135 0.865 48 H 0.074 0.926 49 H 0.116 0.884 50 H 0.120 0.880 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.441 -18.381 14.765 23.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.040 4.040 3 C -0.195 4.195 4 C -0.050 4.050 5 N -0.235 5.235 6 C -0.200 4.200 7 C -0.174 4.174 8 N -0.125 5.125 9 C -0.042 4.042 10 C 0.277 3.723 11 O -0.451 6.451 12 N -0.322 5.322 13 C -0.079 4.079 14 C 0.065 3.935 15 H 0.085 0.915 16 C 0.024 3.976 17 N -0.399 5.399 18 C -0.358 4.358 19 H 0.081 0.919 20 C -0.254 4.254 21 N -0.630 5.630 22 Si 0.776 3.224 23 H -0.230 1.230 24 H -0.216 1.216 25 H -0.167 1.167 26 C -0.179 4.179 27 C -0.208 4.208 28 C -0.205 4.205 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.206 0.794 37 H 0.226 0.774 38 H 0.190 0.810 39 H 0.150 0.850 40 H 0.072 0.928 41 H 0.115 0.885 42 H 0.126 0.874 43 H 0.048 0.952 44 H 0.063 0.937 45 H 0.193 0.807 46 H 0.065 0.935 47 H 0.152 0.848 48 H 0.093 0.907 49 H 0.134 0.866 50 H 0.138 0.862 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.281 -17.284 14.967 22.977 hybrid contribution 0.029 0.597 0.044 0.599 sum 2.310 -16.687 15.011 22.564 Atomic orbital electron populations 1.21752 0.91354 1.03152 1.02874 1.19750 0.98053 0.94828 0.91381 1.21801 0.99989 0.95810 1.01941 1.23015 0.97592 0.89212 0.95215 1.70115 1.25920 1.27823 0.99639 1.22712 1.02080 0.94648 1.00540 1.23193 1.06993 1.05434 0.81785 1.45041 1.37619 1.22888 1.06967 1.22043 0.94483 0.98876 0.88817 1.21211 0.86282 0.84138 0.80621 1.90760 1.68329 1.28364 1.57659 1.47758 1.24460 1.31560 1.28464 1.22192 1.01143 0.86398 0.98186 1.20704 0.83602 0.94797 0.94439 0.91467 1.21092 0.88966 0.92946 0.94609 1.42645 1.32744 1.57568 1.06917 1.19012 1.08122 1.20789 0.87852 0.91948 1.25465 1.00336 1.00204 0.99395 1.69868 1.29589 1.37660 1.25881 0.85782 0.78139 0.78844 0.79647 1.22985 1.21556 1.16655 1.22444 0.88919 1.00165 1.06392 1.23029 1.02164 1.03477 0.92120 1.23020 0.97314 1.02719 0.97411 0.91584 0.91032 0.91349 0.90421 0.94775 0.93302 0.90543 0.79381 0.77381 0.81029 0.85027 0.92817 0.88454 0.87419 0.95161 0.93692 0.80659 0.93490 0.84755 0.90730 0.86578 0.86208 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.59 9.18 71.98 0.66 -2.93 16 2 C -0.02 -0.65 3.02 -11.54 -0.03 -0.69 16 3 C -0.14 -5.06 7.40 71.98 0.53 -4.53 16 4 C 0.21 6.74 6.40 138.13 0.88 7.62 16 5 N -0.52 -16.99 11.25 -188.13 -2.12 -19.11 16 6 C -0.05 -1.40 11.87 83.52 0.99 -0.41 16 7 C -0.04 -0.95 11.58 83.09 0.96 0.01 16 8 N -0.44 -11.53 2.24 -518.33 -1.16 -12.69 16 9 C 0.08 1.68 4.72 85.63 0.40 2.08 16 10 C 0.49 13.96 7.45 87.66 0.65 14.61 16 11 O -0.57 -22.20 15.75 -3.05 -0.05 -22.25 16 12 N -0.59 -14.79 2.24 -822.59 -1.85 -16.64 16 13 C 0.06 1.00 9.38 127.77 1.20 2.20 16 14 C 0.17 4.90 2.42 44.99 0.11 5.01 16 15 H 0.07 2.44 6.66 -2.39 -0.02 2.43 16 16 C 0.15 5.44 5.32 86.38 0.46 5.90 16 17 N -0.75 -35.07 5.24 -343.45 -1.80 -36.87 16 18 C -0.23 -12.86 10.47 84.03 0.88 -11.98 16 19 H 0.06 3.82 8.06 -2.91 -0.02 3.80 16 20 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 21 N -0.98 -63.04 13.97 21.65 0.30 -62.74 16 22 Si 0.95 47.39 23.40 68.60 1.61 48.99 16 23 H -0.30 -15.87 7.11 99.48 0.71 -15.16 16 24 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 25 H -0.24 -10.66 3.96 99.48 0.39 -10.26 16 26 C -0.16 -3.27 5.15 -10.80 -0.06 -3.32 16 27 C -0.17 -3.29 10.18 30.62 0.31 -2.98 16 28 C -0.17 -3.24 9.80 30.62 0.30 -2.94 16 29 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.07 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.08 2.61 4.67 -2.39 -0.01 2.59 16 33 H 0.03 1.41 8.12 -2.38 -0.02 1.39 16 34 H 0.05 1.82 5.31 -2.39 -0.01 1.81 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.19 3.79 8.06 -2.91 -0.02 3.76 16 37 H 0.21 2.82 8.06 -2.91 -0.02 2.79 16 38 H 0.17 1.61 7.39 -2.39 -0.02 1.59 16 39 H 0.13 2.40 7.25 -2.38 -0.02 2.38 16 40 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 41 H 0.10 1.21 6.43 -2.38 -0.02 1.19 16 42 H 0.11 0.81 6.44 -2.39 -0.02 0.80 16 43 H 0.03 1.15 7.48 -2.38 -0.02 1.14 16 44 H 0.05 1.53 7.84 -2.39 -0.02 1.51 16 45 H 0.36 16.97 4.93 -92.70 -0.46 16.52 16 46 H 0.26 15.83 8.31 -92.71 -0.77 15.05 16 47 H 0.13 2.04 6.59 -2.39 -0.02 2.03 16 48 H 0.07 1.75 8.05 -2.39 -0.02 1.73 16 49 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 50 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.08 1.89 7.67 -2.39 -0.02 1.88 16 Total: -1.00 -83.08 396.40 3.82 -79.26 By element: Atomic # 1 Polarization: 37.48 SS G_CDS: 0.16 Total: 37.64 kcal Atomic # 6 Polarization: -4.32 SS G_CDS: 8.72 Total: 4.40 kcal Atomic # 7 Polarization: -141.42 SS G_CDS: -6.62 Total: -148.04 kcal Atomic # 8 Polarization: -22.20 SS G_CDS: -0.05 Total: -22.25 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.61 Total: 48.99 kcal Total: -83.08 3.82 -79.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700731513.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.945 kcal (2) G-P(sol) polarization free energy of solvation -83.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.259 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds