Wall clock time and date at job start Tue Mar 31 2020 19:35:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52996 * 109.47027 * 2 1 4 4 C 1.50700 * 109.46723 * 119.99774 * 2 1 3 5 5 N 1.30447 * 125.99081 * 300.26064 * 4 2 1 6 6 N 1.39940 * 108.89931 * 180.18590 * 5 4 2 7 7 C 1.46492 * 125.75541 * 179.84658 * 6 5 4 8 8 C 1.34258 * 108.48801 * 359.58571 * 6 5 4 9 9 C 1.38040 * 107.42137 * 0.23882 * 8 6 5 10 10 C 1.47426 * 126.41984 * 180.02562 * 9 8 6 11 11 O 1.21600 * 120.00180 * 179.97438 * 10 9 8 12 12 N 1.34782 * 119.99450 * 359.97106 * 10 9 8 13 13 C 1.46500 * 119.99802 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47471 * 180.02562 * 13 12 10 15 15 C 1.52996 * 109.47395 * 180.02562 * 14 13 12 16 16 N 1.46502 * 109.47191 * 179.97438 * 15 14 13 17 17 C 1.36934 * 119.99723 * 270.00095 * 16 15 14 18 18 H 1.08011 * 119.99721 * 144.92204 * 17 16 15 19 19 C 1.38807 * 120.00250 * 324.91857 * 17 16 15 20 20 N 1.31619 * 120.00231 * 337.94624 * 19 17 16 21 21 Si 1.86797 * 119.99961 * 157.95096 * 19 17 16 22 22 H 1.48499 * 109.47343 * 60.00136 * 21 19 17 23 23 H 1.48505 * 109.47347 * 180.02562 * 21 19 17 24 24 H 1.48497 * 109.47483 * 299.99883 * 21 19 17 25 25 C 1.46500 * 119.99940 * 89.99887 * 16 15 14 26 26 C 1.52997 * 117.49665 * 183.23916 * 25 16 15 27 27 C 1.53000 * 117.50049 * 114.58098 * 25 16 15 28 28 H 1.08995 * 109.47235 * 300.00237 * 1 2 3 29 29 H 1.09004 * 109.47168 * 60.00170 * 1 2 3 30 30 H 1.09003 * 109.47393 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.46860 * 239.99429 * 2 1 3 32 32 H 1.09003 * 109.46688 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.46971 * 299.99496 * 3 2 1 34 34 H 1.08998 * 109.47767 * 59.99984 * 3 2 1 35 35 H 1.09005 * 109.47327 * 269.69209 * 7 6 5 36 36 H 1.09007 * 109.47322 * 29.68909 * 7 6 5 37 37 H 1.09000 * 109.47401 * 149.69315 * 7 6 5 38 38 H 1.07997 * 126.28963 * 180.22190 * 8 6 5 39 39 H 0.96995 * 120.00594 * 0.02562 * 12 10 9 40 40 H 1.09006 * 109.47022 * 300.00729 * 13 12 10 41 41 H 1.09009 * 109.47077 * 60.00151 * 13 12 10 42 42 H 1.09001 * 109.46721 * 300.00287 * 14 13 12 43 43 H 1.09002 * 109.46750 * 60.00128 * 14 13 12 44 44 H 1.09001 * 109.47322 * 299.99799 * 15 14 13 45 45 H 1.09002 * 109.47165 * 60.00262 * 15 14 13 46 46 H 0.96993 * 120.00331 * 175.75891 * 20 19 17 47 47 H 1.09001 * 115.55253 * 328.90531 * 25 16 15 48 48 H 1.09003 * 117.50349 * 0.02562 * 26 25 16 49 49 H 1.09003 * 117.49702 * 145.02450 * 26 25 16 50 50 H 1.09000 * 117.49902 * 214.97923 * 27 25 16 51 51 H 1.09008 * 117.49635 * 359.97216 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 7 1.7862 -0.3708 2.4658 6 7 2.4309 -1.2720 3.3205 7 6 2.4034 -1.2322 4.7847 8 6 3.0742 -2.1825 2.5724 9 6 2.8479 -1.8640 1.2485 10 6 3.3607 -2.5915 0.0732 11 8 3.0871 -2.2065 -1.0472 12 7 4.1330 -3.6833 0.2409 13 6 4.6431 -4.4060 -0.9269 14 6 5.4846 -5.5965 -0.4626 15 6 6.0178 -6.3508 -1.6822 16 7 6.8240 -7.4903 -1.2375 17 6 8.1689 -7.3380 -1.0300 18 1 8.6576 -7.8813 -0.2346 19 6 8.9043 -6.4853 -1.8417 20 7 8.4562 -6.1656 -3.0373 21 14 10.5301 -5.7917 -1.2374 22 1 11.4667 -6.9069 -0.9469 23 1 11.1136 -4.9145 -2.2840 24 1 10.3022 -5.0018 -0.0008 25 6 6.1913 -8.7928 -1.0149 26 6 7.0717 -9.9233 -0.4785 27 6 6.6018 -9.9441 -1.9351 28 1 -0.3633 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9564 0.8899 35 1 3.2358 -0.6292 5.1475 36 1 1.4635 -0.7924 5.1186 37 1 2.4903 -2.2452 5.1774 38 1 3.6611 -3.0116 2.9391 39 1 4.3510 -3.9907 1.1346 40 1 3.8063 -4.7647 -1.5263 41 1 5.2597 -3.7370 -1.5274 42 1 6.3213 -5.2380 0.1370 43 1 4.8676 -6.2653 0.1376 44 1 5.1813 -6.7092 -2.2821 45 1 6.6349 -5.6817 -2.2820 46 1 8.9384 -5.5224 -3.5799 47 1 5.1543 -8.7607 -0.6808 48 1 8.1215 -9.6979 -0.2908 49 1 6.6136 -10.6352 0.2082 50 1 5.8349 -10.6697 -2.2062 51 1 7.3423 -9.7324 -2.7065 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713048593.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:26 Heat of formation + Delta-G solvation = 52.641139 kcal Electronic energy + Delta-G solvation = -28619.481895 eV Core-core repulsion = 24748.862608 eV Total energy + Delta-G solvation = -3870.619286 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -42.48086 -40.17835 -38.81712 -36.96319 -36.38280 -35.20843 -33.59356 -33.16852 -31.74636 -30.58277 -28.03977 -27.95260 -27.06817 -25.34895 -23.72044 -23.17037 -23.00531 -22.45978 -21.51640 -21.03261 -20.11278 -18.61374 -18.22504 -17.29540 -17.04825 -16.78436 -16.60015 -16.27395 -16.21911 -15.67172 -15.63248 -15.46224 -14.92177 -14.86616 -14.36358 -14.28274 -14.09525 -13.84550 -13.62665 -13.50700 -13.33487 -13.16157 -12.97261 -12.69980 -12.59765 -12.44783 -12.38844 -12.24990 -12.12259 -12.03912 -11.97741 -11.78289 -11.74042 -11.40391 -11.25886 -10.88641 -10.69023 -10.43108 -10.36918 -10.11146 -9.59627 -8.50938 -7.76403 -5.42024 0.52501 1.10531 1.46123 1.46884 1.49239 1.55235 2.30074 2.46764 2.52355 3.17734 3.34009 3.44016 3.54802 3.64911 3.95218 4.08220 4.19739 4.24113 4.25430 4.34588 4.34971 4.42785 4.45527 4.49933 4.58923 4.59452 4.64309 4.65184 4.71869 4.77676 4.81714 4.93009 4.94797 4.96751 5.01101 5.09938 5.11074 5.18334 5.29535 5.32000 5.39261 5.50253 5.52660 5.57400 5.60033 5.71525 5.90298 5.91438 6.47822 6.52299 6.71856 7.18197 7.35349 7.89457 8.38644 9.13825 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013115 B = 0.002411 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2134.455451 B =11611.432872 C =11819.133719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.037 4.037 3 C -0.131 4.131 4 C 0.126 3.874 5 N -0.318 5.318 6 N -0.358 5.358 7 C 0.086 3.914 8 C 0.121 3.879 9 C -0.320 4.320 10 C 0.588 3.412 11 O -0.585 6.585 12 N -0.712 5.712 13 C 0.137 3.863 14 C -0.120 4.120 15 C 0.148 3.852 16 N -0.568 5.568 17 C -0.256 4.256 18 H 0.063 0.937 19 C -0.038 4.038 20 N -0.915 5.915 21 Si 0.950 3.050 22 H -0.278 1.278 23 H -0.298 1.298 24 H -0.275 1.275 25 C 0.104 3.896 26 C -0.180 4.180 27 C -0.224 4.224 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.044 0.956 31 H 0.093 0.907 32 H 0.041 0.959 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.225 0.775 39 H 0.411 0.589 40 H 0.060 0.940 41 H 0.042 0.958 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.029 0.971 45 H 0.067 0.933 46 H 0.249 0.751 47 H 0.115 0.885 48 H 0.074 0.926 49 H 0.112 0.888 50 H 0.100 0.900 51 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.569 8.548 16.940 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.058 4.058 3 C -0.189 4.189 4 C -0.041 4.041 5 N -0.140 5.140 6 N -0.135 5.135 7 C -0.053 4.053 8 C -0.032 4.032 9 C -0.336 4.336 10 C 0.377 3.623 11 O -0.467 6.467 12 N -0.363 5.363 13 C 0.012 3.988 14 C -0.160 4.160 15 C 0.021 3.979 16 N -0.286 5.286 17 C -0.386 4.386 18 H 0.080 0.920 19 C -0.235 4.235 20 N -0.559 5.559 21 Si 0.779 3.221 22 H -0.203 1.203 23 H -0.224 1.224 24 H -0.201 1.201 25 C -0.005 4.005 26 C -0.218 4.218 27 C -0.265 4.265 28 H 0.079 0.921 29 H 0.094 0.906 30 H 0.063 0.937 31 H 0.111 0.889 32 H 0.060 0.940 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.242 0.758 39 H 0.247 0.753 40 H 0.078 0.922 41 H 0.061 0.939 42 H 0.073 0.927 43 H 0.090 0.910 44 H 0.047 0.953 45 H 0.085 0.915 46 H 0.059 0.941 47 H 0.133 0.867 48 H 0.092 0.908 49 H 0.130 0.870 50 H 0.118 0.882 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.246 9.727 16.982 24.808 hybrid contribution 1.803 -0.425 -0.463 1.910 sum -13.443 9.302 16.519 23.240 Atomic orbital electron populations 1.21704 0.92765 1.01558 1.02767 1.19968 0.96957 0.96122 0.92725 1.21712 1.00297 0.94128 1.02793 1.22536 0.94382 0.93361 0.93845 1.77073 1.21130 1.15660 1.00094 1.48730 1.36309 1.19959 1.08536 1.22423 1.05502 1.06653 0.70679 1.23626 0.94915 0.94968 0.89680 1.20255 1.15433 1.04606 0.93260 1.17607 0.77313 0.79581 0.87796 1.90673 1.60784 1.68350 1.26863 1.45736 1.51632 1.28447 1.10525 1.21088 0.96895 0.93006 0.87793 1.22063 0.98217 0.95428 1.00258 1.20761 0.93138 0.89919 0.94064 1.43619 1.04154 1.03693 1.77112 1.19202 0.84939 1.25525 1.08981 0.91953 1.25751 1.00278 1.03370 0.94084 1.70167 1.42292 1.34825 1.08567 0.85615 0.80772 0.78323 0.77432 1.20348 1.22441 1.20100 1.21556 0.95759 0.82033 1.01106 1.23038 1.00338 1.02136 0.96317 1.23287 1.04242 1.05714 0.93285 0.92143 0.90559 0.93663 0.88908 0.93981 0.90519 0.92112 0.88914 0.88556 0.85789 0.75830 0.75250 0.92214 0.93940 0.92686 0.90955 0.95293 0.91503 0.94142 0.86728 0.90772 0.86967 0.88163 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.75 9.17 71.98 0.66 -2.09 16 2 C -0.04 -0.95 3.26 -11.54 -0.04 -0.99 16 3 C -0.13 -2.88 9.17 71.98 0.66 -2.22 16 4 C 0.13 3.34 5.77 43.52 0.25 3.59 16 5 N -0.32 -7.55 12.50 -46.67 -0.58 -8.14 16 6 N -0.36 -5.94 3.98 -367.79 -1.46 -7.41 16 7 C 0.09 0.52 11.44 127.77 1.46 1.98 16 8 C 0.12 2.01 10.99 84.27 0.93 2.93 16 9 C -0.32 -8.19 6.13 -20.15 -0.12 -8.31 16 10 C 0.59 18.16 7.81 86.66 0.68 18.84 16 11 O -0.59 -22.65 14.56 -4.03 -0.06 -22.71 16 12 N -0.71 -19.14 5.55 -466.36 -2.59 -21.73 16 13 C 0.14 4.49 5.67 86.38 0.49 4.98 16 14 C -0.12 -4.12 5.65 30.59 0.17 -3.95 16 15 C 0.15 6.53 5.34 86.38 0.46 7.00 16 16 N -0.57 -26.72 2.78 -678.03 -1.88 -28.61 16 17 C -0.26 -13.31 8.63 84.03 0.72 -12.59 16 18 H 0.06 3.22 6.55 -2.90 -0.02 3.20 16 19 C -0.04 -2.02 4.96 84.86 0.42 -1.60 16 20 N -0.91 -52.72 11.33 21.65 0.25 -52.47 16 21 Si 0.95 43.63 29.61 68.60 2.03 45.66 16 22 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 23 H -0.30 -13.98 7.11 99.48 0.71 -13.27 16 24 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 25 C 0.10 4.10 6.56 44.99 0.30 4.40 16 26 C -0.18 -6.52 9.80 30.62 0.30 -6.22 16 27 C -0.22 -8.75 10.36 30.62 0.32 -8.43 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.09 2.87 5.60 -2.39 -0.01 2.86 16 32 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 35 H 0.09 0.37 8.14 -2.38 -0.02 0.35 16 36 H 0.10 0.55 8.14 -2.38 -0.02 0.53 16 37 H 0.12 -0.02 8.14 -2.39 -0.02 -0.04 16 38 H 0.23 1.54 7.46 -2.91 -0.02 1.52 16 39 H 0.41 8.00 7.40 -92.71 -0.69 7.31 16 40 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.04 1.61 8.14 -2.38 -0.02 1.59 16 42 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 43 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 44 H 0.03 1.24 8.07 -2.39 -0.02 1.22 16 45 H 0.07 3.51 5.35 -2.39 -0.01 3.49 16 46 H 0.25 14.10 8.32 -92.71 -0.77 13.33 16 47 H 0.12 3.86 8.14 -2.39 -0.02 3.84 16 48 H 0.07 3.03 6.37 -2.39 -0.02 3.02 16 49 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 50 H 0.10 3.25 8.14 -2.39 -0.02 3.23 16 51 H 0.05 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -73.82 415.89 3.59 -70.23 By element: Atomic # 1 Polarization: 27.62 SS G_CDS: 0.23 Total: 27.85 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 7.66 Total: -2.68 kcal Atomic # 7 Polarization: -112.07 SS G_CDS: -6.27 Total: -118.35 kcal Atomic # 8 Polarization: -22.65 SS G_CDS: -0.06 Total: -22.71 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -73.82 3.59 -70.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713048593.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.868 kcal (2) G-P(sol) polarization free energy of solvation -73.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.227 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds