Wall clock time and date at job start Tue Mar 31 2020 19:25:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47339 * 2 1 4 4 C 1.50700 * 109.46527 * 119.99909 * 2 1 3 5 5 C 1.39677 * 126.07055 * 274.99562 * 4 2 1 6 6 C 1.38405 * 105.35815 * 179.97438 * 5 4 2 7 7 C 1.47160 * 126.88029 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00057 * 154.52889 * 7 6 5 9 9 N 1.34774 * 120.00242 * 334.52111 * 7 6 5 10 10 C 1.46936 * 120.62853 * 358.20115 * 9 7 6 11 11 C 1.52760 * 109.00618 * 233.58165 * 10 9 7 12 12 C 1.53031 * 109.38686 * 305.58863 * 11 10 9 13 13 C 1.53038 * 109.54085 * 61.23960 * 12 11 10 14 14 C 1.46927 * 120.63508 * 178.48243 * 9 7 6 15 15 H 1.08997 * 109.58547 * 246.15935 * 14 9 7 16 16 C 1.52995 * 109.58336 * 6.43728 * 14 9 7 17 17 N 1.46503 * 109.47238 * 289.47024 * 16 14 9 18 18 C 1.36940 * 119.99789 * 185.83175 * 17 16 14 19 19 H 1.07999 * 120.00312 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99718 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99951 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47030 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47398 * 120.00122 * 22 20 18 25 25 H 1.48507 * 109.47410 * 239.99730 * 22 20 18 26 26 N 1.36599 * 106.23591 * 359.97438 * 6 5 4 27 27 C 1.46497 * 125.19008 * 180.02562 * 26 6 5 28 28 N 1.28442 * 109.61943 * 0.02562 * 26 6 5 29 29 H 1.08996 * 109.46912 * 300.00607 * 1 2 3 30 30 H 1.09007 * 109.46567 * 59.99731 * 1 2 3 31 31 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46912 * 239.99393 * 2 1 3 33 33 H 1.08999 * 109.47000 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47436 * 299.99791 * 3 2 1 35 35 H 1.08996 * 109.47614 * 59.99823 * 3 2 1 36 36 H 1.07991 * 127.31761 * 0.24124 * 5 4 2 37 37 H 1.08999 * 109.58532 * 353.41970 * 10 9 7 38 38 H 1.08995 * 109.58664 * 113.84408 * 10 9 7 39 39 H 1.09007 * 109.56272 * 185.54882 * 11 10 9 40 40 H 1.09006 * 109.38696 * 65.51705 * 11 10 9 41 41 H 1.09002 * 109.46027 * 301.21823 * 12 11 10 42 42 H 1.09001 * 109.46043 * 181.26248 * 12 11 10 43 43 H 1.08997 * 109.50220 * 178.68327 * 13 12 11 44 44 H 1.09006 * 109.49511 * 58.58616 * 13 12 11 45 45 H 1.09003 * 109.47493 * 49.47359 * 16 14 9 46 46 H 1.09007 * 109.46962 * 169.47205 * 16 14 9 47 47 H 0.96999 * 119.99907 * 5.82779 * 17 16 14 48 48 H 0.97001 * 119.99780 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.46995 * 93.09868 * 27 26 6 50 50 H 1.09004 * 109.46921 * 213.09257 * 27 26 6 51 51 H 1.08999 * 109.47227 * 333.09997 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.2136 -0.1404 2.4927 6 6 2.6846 -1.1661 3.2939 7 6 3.0332 -1.0830 4.7212 8 8 2.9873 -2.0792 5.4174 9 7 3.4034 0.0970 5.2569 10 6 3.5017 1.3010 4.4203 11 6 4.8880 1.9179 4.5973 12 6 5.1487 2.1630 6.0852 13 6 5.1114 0.8308 6.8377 14 6 3.7223 0.2027 6.6872 15 1 2.9815 0.8314 7.1812 16 6 3.7151 -1.1909 7.3186 17 7 2.3393 -1.6900 7.3848 18 6 2.0695 -2.8714 8.0224 19 1 2.8710 -3.4355 8.4761 20 6 0.7659 -3.3440 8.0856 21 7 -0.2110 -2.6563 7.5330 22 14 0.3979 -4.9560 8.9547 23 1 1.6596 -5.5306 9.4870 24 1 -0.5459 -4.7105 10.0745 25 1 -0.2124 -5.9090 7.9930 26 7 2.7601 -2.2712 2.4945 27 6 3.2113 -3.5963 2.9264 28 7 2.3750 -1.9712 1.3064 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.0224 0.8820 2.7830 37 1 3.3537 1.0322 3.3744 38 1 2.7427 2.0211 4.7257 39 1 4.9379 2.8642 4.0585 40 1 5.6409 1.2350 4.2037 41 1 4.3815 2.8268 6.4838 42 1 6.1284 2.6238 6.2112 43 1 5.3202 1.0033 7.8934 44 1 5.8618 0.1577 6.4231 45 1 4.3183 -1.8673 6.7130 46 1 4.1305 -1.1360 8.3249 47 1 1.6195 -1.1835 6.9770 48 1 -1.1220 -2.9865 7.5776 49 1 2.3508 -4.1913 3.2323 50 1 3.7216 -4.0932 2.1012 51 1 3.8972 -3.4905 3.7669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713267091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:34 Heat of formation + Delta-G solvation = 97.971989 kcal Electronic energy + Delta-G solvation = -31186.096213 eV Core-core repulsion = 27317.442620 eV Total energy + Delta-G solvation = -3868.653593 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.36628 -39.90945 -36.98131 -35.84534 -34.56890 -33.03544 -32.07628 -31.98690 -30.19562 -29.78614 -27.22271 -26.66759 -26.16362 -24.53049 -23.02089 -22.90617 -22.38174 -21.11086 -20.37207 -19.70818 -18.41749 -17.16898 -16.51114 -16.17978 -15.89404 -15.48311 -14.84719 -14.69824 -14.57429 -14.43218 -14.17936 -13.79937 -13.62804 -13.36248 -13.30493 -13.04277 -12.92585 -12.65771 -12.49903 -12.33440 -12.25817 -12.13882 -11.99459 -11.62798 -11.39774 -11.19630 -11.07187 -11.02018 -10.91130 -10.74998 -10.74012 -10.56443 -10.32657 -10.14637 -9.87108 -9.53639 -8.85104 -8.72752 -8.59926 -8.42284 -8.09492 -6.53240 -5.57554 -2.77096 1.73743 2.64772 2.76525 3.43474 3.51446 3.57074 3.59487 3.71194 4.48554 4.68902 4.73781 4.83697 4.89299 4.94116 5.06752 5.08919 5.15781 5.19030 5.39949 5.43331 5.44371 5.50868 5.56278 5.60432 5.63442 5.68260 5.73615 5.78132 5.79695 5.81973 5.85336 5.86902 5.94293 5.97947 6.01817 6.02927 6.09989 6.14150 6.24411 6.32222 6.35491 6.52110 6.63647 6.72817 6.90103 7.01824 7.23996 7.84715 7.85726 8.34435 8.60128 8.81225 9.71610 10.31920 10.66097 11.66135 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.004749 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.760456 B = 5894.980032 C = 7783.543529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.007 4.007 3 C -0.142 4.142 4 C 0.029 3.971 5 C -0.213 4.213 6 C -0.002 4.002 7 C 0.540 3.460 8 O -0.439 6.439 9 N -0.598 5.598 10 C 0.079 3.921 11 C -0.133 4.133 12 C -0.118 4.118 13 C -0.127 4.127 14 C 0.144 3.856 15 H 0.071 0.929 16 C 0.160 3.840 17 N -0.693 5.693 18 C -0.209 4.209 19 H 0.066 0.934 20 C -0.020 4.020 21 N -0.936 5.936 22 Si 0.900 3.100 23 H -0.283 1.283 24 H -0.295 1.295 25 H -0.295 1.295 26 N -0.259 5.259 27 C 0.094 3.906 28 N -0.290 5.290 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.080 0.920 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.164 0.836 37 H 0.111 0.889 38 H 0.063 0.937 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.065 0.935 45 H 0.038 0.962 46 H 0.018 0.982 47 H 0.380 0.620 48 H 0.249 0.751 49 H 0.088 0.912 50 H 0.086 0.914 51 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.840 11.887 -13.750 20.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.027 4.027 3 C -0.200 4.200 4 C -0.128 4.128 5 C -0.241 4.241 6 C -0.132 4.132 7 C 0.324 3.676 8 O -0.307 6.307 9 N -0.336 5.336 10 C -0.044 4.044 11 C -0.171 4.171 12 C -0.156 4.156 13 C -0.165 4.165 14 C 0.041 3.959 15 H 0.089 0.911 16 C 0.033 3.967 17 N -0.336 5.336 18 C -0.341 4.341 19 H 0.084 0.916 20 C -0.215 4.215 21 N -0.586 5.586 22 Si 0.733 3.267 23 H -0.208 1.208 24 H -0.223 1.223 25 H -0.223 1.223 26 N -0.045 5.045 27 C -0.047 4.047 28 N -0.123 5.123 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.075 0.925 32 H 0.098 0.902 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.181 0.819 37 H 0.128 0.872 38 H 0.082 0.918 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.079 0.921 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.055 0.945 46 H 0.035 0.965 47 H 0.214 0.786 48 H 0.059 0.941 49 H 0.106 0.894 50 H 0.105 0.895 51 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 9.994 9.954 -13.799 19.733 hybrid contribution -0.726 -0.059 0.828 1.103 sum 9.268 9.896 -12.972 18.764 Atomic orbital electron populations 1.21817 0.94118 1.02231 1.01872 1.19355 0.95530 0.94762 0.93051 1.21813 1.01188 0.94941 1.02061 1.21841 1.04438 0.90238 0.96265 1.22166 1.09383 0.99725 0.92842 1.21769 1.08736 0.88112 0.94587 1.17009 0.81279 0.85018 0.84332 1.91277 1.47094 1.34764 1.57604 1.47450 1.69375 1.07886 1.08878 1.22383 0.96808 0.87305 0.97872 1.21832 0.97648 1.00697 0.96916 1.21511 1.01509 0.97370 0.95212 1.21904 0.97290 0.96597 1.00750 1.21527 0.95324 0.99372 0.79632 0.91083 1.20897 0.90226 0.90018 0.95577 1.42276 1.01939 1.24464 1.64956 1.19191 0.92161 0.97835 1.24884 0.91644 1.24615 0.95911 0.98767 1.02230 1.69675 0.99205 1.39275 1.50476 0.86193 0.77595 0.84138 0.78823 1.20803 1.22250 1.22311 1.45434 1.44698 1.09453 1.04957 1.22190 1.02109 0.79009 1.01346 1.73034 1.18187 1.17566 1.03484 0.92235 0.92305 0.92546 0.90210 0.92477 0.92192 0.92167 0.81850 0.87197 0.91830 0.91149 0.91839 0.91829 0.92085 0.90793 0.91631 0.94473 0.96479 0.78624 0.94064 0.89375 0.89549 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 9.18 37.16 0.34 -1.15 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.20 8.79 37.15 0.33 -0.87 16 4 C 0.03 0.42 6.13 -82.46 -0.51 -0.08 16 5 C -0.21 -3.14 7.82 -38.98 -0.30 -3.45 16 6 C 0.00 -0.04 6.57 -82.06 -0.54 -0.58 16 7 C 0.54 10.35 6.96 -12.64 -0.09 10.26 16 8 O -0.44 -10.17 9.08 5.25 0.05 -10.12 16 9 N -0.60 -9.62 2.98 -166.84 -0.50 -10.11 16 10 C 0.08 0.95 5.38 -3.93 -0.02 0.93 16 11 C -0.13 -1.32 6.06 -26.84 -0.16 -1.48 16 12 C -0.12 -1.20 5.88 -26.70 -0.16 -1.36 16 13 C -0.13 -1.59 5.36 -26.61 -0.14 -1.74 16 14 C 0.14 2.39 2.92 -67.60 -0.20 2.19 16 15 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 16 C 0.16 3.37 4.88 -4.04 -0.02 3.35 16 17 N -0.69 -18.24 3.21 -59.91 -0.19 -18.43 16 18 C -0.21 -6.09 9.73 -15.06 -0.15 -6.23 16 19 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 20 C -0.02 -0.62 5.50 -17.43 -0.10 -0.71 16 21 N -0.94 -29.70 13.06 55.49 0.72 -28.97 16 22 Si 0.90 23.54 29.55 -169.99 -5.02 18.52 16 23 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 24 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 25 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 26 N -0.26 -4.45 3.75 -63.88 -0.24 -4.69 16 27 C 0.09 1.41 10.77 59.85 0.64 2.06 16 28 N -0.29 -4.82 11.90 33.64 0.40 -4.42 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.49 7.37 -51.93 -0.38 0.11 16 36 H 0.16 2.01 5.41 -52.49 -0.28 1.73 16 37 H 0.11 1.28 3.47 -51.93 -0.18 1.10 16 38 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 44 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.04 0.84 6.34 -51.93 -0.33 0.51 16 46 H 0.02 0.36 8.12 -51.92 -0.42 -0.06 16 47 H 0.38 10.78 7.08 -40.82 -0.29 10.49 16 48 H 0.25 7.70 8.31 -40.82 -0.34 7.36 16 49 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 50 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.10 1.60 6.85 -51.93 -0.36 1.25 16 LS Contribution 391.22 15.07 5.90 5.90 Total: -1.00 -35.02 391.22 -8.82 -43.84 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -8.55 Total: 7.73 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.38 Total: 0.76 kcal Atomic # 7 Polarization: -66.82 SS G_CDS: 0.20 Total: -66.63 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: 0.05 Total: -10.12 kcal Atomic # 14 Polarization: 23.54 SS G_CDS: -5.02 Total: 18.52 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.02 -8.82 -43.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713267091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.810 kcal (2) G-P(sol) polarization free energy of solvation -35.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds