Wall clock time and date at job start Tue Mar 31 2020 19:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52990 * 109.47339 * 2 1 4 4 C 1.50700 * 109.46527 * 119.99909 * 2 1 3 5 5 C 1.39677 * 126.07055 * 274.99562 * 4 2 1 6 6 C 1.38405 * 105.35815 * 179.97438 * 5 4 2 7 7 C 1.47160 * 126.88029 * 180.02562 * 6 5 4 8 8 O 1.21626 * 120.00057 * 154.52889 * 7 6 5 9 9 N 1.34774 * 120.00242 * 334.52111 * 7 6 5 10 10 C 1.46936 * 120.62853 * 358.20115 * 9 7 6 11 11 C 1.52760 * 109.00618 * 233.58165 * 10 9 7 12 12 C 1.53031 * 109.38686 * 305.58863 * 11 10 9 13 13 C 1.53038 * 109.54085 * 61.23960 * 12 11 10 14 14 C 1.46927 * 120.63508 * 178.48243 * 9 7 6 15 15 H 1.08997 * 109.58547 * 246.15935 * 14 9 7 16 16 C 1.52995 * 109.58336 * 6.43728 * 14 9 7 17 17 N 1.46503 * 109.47238 * 289.47024 * 16 14 9 18 18 C 1.36940 * 119.99789 * 185.83175 * 17 16 14 19 19 H 1.07999 * 120.00312 * 359.97438 * 18 17 16 20 20 C 1.38806 * 119.99718 * 179.97438 * 18 17 16 21 21 N 1.31627 * 120.00293 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 119.99951 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.47030 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47398 * 120.00122 * 22 20 18 25 25 H 1.48507 * 109.47410 * 239.99730 * 22 20 18 26 26 N 1.36599 * 106.23591 * 359.97438 * 6 5 4 27 27 C 1.46497 * 125.19008 * 180.02562 * 26 6 5 28 28 N 1.28442 * 109.61943 * 0.02562 * 26 6 5 29 29 H 1.08996 * 109.46912 * 300.00607 * 1 2 3 30 30 H 1.09007 * 109.46567 * 59.99731 * 1 2 3 31 31 H 1.08996 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.46912 * 239.99393 * 2 1 3 33 33 H 1.08999 * 109.47000 * 179.97438 * 3 2 1 34 34 H 1.08998 * 109.47436 * 299.99791 * 3 2 1 35 35 H 1.08996 * 109.47614 * 59.99823 * 3 2 1 36 36 H 1.07991 * 127.31761 * 0.24124 * 5 4 2 37 37 H 1.08999 * 109.58532 * 353.41970 * 10 9 7 38 38 H 1.08995 * 109.58664 * 113.84408 * 10 9 7 39 39 H 1.09007 * 109.56272 * 185.54882 * 11 10 9 40 40 H 1.09006 * 109.38696 * 65.51705 * 11 10 9 41 41 H 1.09002 * 109.46027 * 301.21823 * 12 11 10 42 42 H 1.09001 * 109.46043 * 181.26248 * 12 11 10 43 43 H 1.08997 * 109.50220 * 178.68327 * 13 12 11 44 44 H 1.09006 * 109.49511 * 58.58616 * 13 12 11 45 45 H 1.09003 * 109.47493 * 49.47359 * 16 14 9 46 46 H 1.09007 * 109.46962 * 169.47205 * 16 14 9 47 47 H 0.96999 * 119.99907 * 5.82779 * 17 16 14 48 48 H 0.97001 * 119.99780 * 180.02562 * 21 20 18 49 49 H 1.08999 * 109.46995 * 93.09868 * 27 26 6 50 50 H 1.09004 * 109.46921 * 213.09257 * 27 26 6 51 51 H 1.08999 * 109.47227 * 333.09997 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0322 -0.7104 1.2305 5 6 2.2136 -0.1404 2.4927 6 6 2.6846 -1.1661 3.2939 7 6 3.0332 -1.0830 4.7212 8 8 2.9873 -2.0792 5.4174 9 7 3.4034 0.0970 5.2569 10 6 3.5017 1.3010 4.4203 11 6 4.8880 1.9179 4.5973 12 6 5.1487 2.1630 6.0852 13 6 5.1114 0.8308 6.8377 14 6 3.7223 0.2027 6.6872 15 1 2.9815 0.8314 7.1812 16 6 3.7151 -1.1909 7.3186 17 7 2.3393 -1.6900 7.3848 18 6 2.0695 -2.8714 8.0224 19 1 2.8710 -3.4355 8.4761 20 6 0.7659 -3.3440 8.0856 21 7 -0.2110 -2.6563 7.5330 22 14 0.3979 -4.9560 8.9547 23 1 1.6596 -5.5306 9.4870 24 1 -0.5459 -4.7105 10.0745 25 1 -0.2124 -5.9090 7.9930 26 7 2.7601 -2.2712 2.4945 27 6 3.2113 -3.5963 2.9264 28 7 2.3750 -1.9712 1.3064 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 3.1301 1.4423 0.0005 34 1 1.6768 1.9563 -0.8900 35 1 1.6768 1.9563 0.8899 36 1 2.0224 0.8820 2.7830 37 1 3.3537 1.0322 3.3744 38 1 2.7427 2.0211 4.7257 39 1 4.9379 2.8642 4.0585 40 1 5.6409 1.2350 4.2037 41 1 4.3815 2.8268 6.4838 42 1 6.1284 2.6238 6.2112 43 1 5.3202 1.0033 7.8934 44 1 5.8618 0.1577 6.4231 45 1 4.3183 -1.8673 6.7130 46 1 4.1305 -1.1360 8.3249 47 1 1.6195 -1.1835 6.9770 48 1 -1.1220 -2.9865 7.5776 49 1 2.3508 -4.1913 3.2323 50 1 3.7216 -4.0932 2.1012 51 1 3.8972 -3.4905 3.7669 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713267091.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:32 Heat of formation + Delta-G solvation = 75.775000 kcal Electronic energy + Delta-G solvation = -31187.058747 eV Core-core repulsion = 27317.442620 eV Total energy + Delta-G solvation = -3869.616127 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.61205 -41.26222 -38.24749 -36.80107 -36.41069 -34.34127 -33.68412 -33.14431 -31.78528 -31.20014 -28.14574 -27.78627 -27.56719 -26.04927 -24.48808 -24.13601 -23.74484 -22.41920 -21.47472 -20.89387 -19.61339 -19.11624 -17.90747 -17.45605 -17.17075 -16.79974 -16.68631 -15.91621 -15.74290 -15.67402 -15.29561 -15.20413 -15.01165 -14.63041 -14.48710 -14.36290 -14.18231 -13.98616 -13.73799 -13.68726 -13.45690 -13.32007 -13.11060 -12.85775 -12.85051 -12.64709 -12.25840 -12.11906 -12.09663 -12.02579 -11.96280 -11.85501 -11.71245 -11.52959 -11.37223 -11.19009 -10.91018 -10.22804 -9.92769 -9.75975 -9.47622 -8.64424 -7.85953 -5.04437 0.40873 1.40942 1.41517 1.43103 1.52608 1.60023 2.16650 2.29208 2.59448 3.41581 3.47326 3.50326 3.82733 3.87232 3.94963 4.05230 4.13123 4.15019 4.19488 4.32292 4.35613 4.36126 4.41551 4.49637 4.50193 4.53365 4.61378 4.63934 4.72942 4.81630 4.88297 4.92163 5.00351 5.05923 5.07561 5.12391 5.14020 5.16045 5.24013 5.26873 5.32658 5.45713 5.50500 5.50868 5.54266 5.60491 5.78236 5.81378 6.34798 6.51364 7.10413 7.37565 7.42749 8.21828 8.44165 9.38971 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009724 B = 0.004749 C = 0.003596 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2878.760456 B = 5894.980032 C = 7783.543529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.138 4.138 4 C 0.030 3.970 5 C -0.197 4.197 6 C -0.034 4.034 7 C 0.541 3.459 8 O -0.495 6.495 9 N -0.593 5.593 10 C 0.072 3.928 11 C -0.126 4.126 12 C -0.114 4.114 13 C -0.119 4.119 14 C 0.149 3.851 15 H 0.065 0.935 16 C 0.163 3.837 17 N -0.702 5.702 18 C -0.206 4.206 19 H 0.064 0.936 20 C -0.084 4.084 21 N -0.975 5.975 22 Si 0.964 3.036 23 H -0.269 1.269 24 H -0.293 1.293 25 H -0.302 1.302 26 N -0.273 5.273 27 C 0.097 3.903 28 N -0.308 5.308 29 H 0.053 0.947 30 H 0.086 0.914 31 H 0.035 0.965 32 H 0.084 0.916 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.191 0.809 37 H 0.115 0.885 38 H 0.079 0.921 39 H 0.104 0.896 40 H 0.056 0.944 41 H 0.071 0.929 42 H 0.085 0.915 43 H 0.084 0.916 44 H 0.060 0.940 45 H 0.022 0.978 46 H 0.019 0.981 47 H 0.366 0.634 48 H 0.243 0.757 49 H 0.070 0.930 50 H 0.116 0.884 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.098 14.641 -15.194 23.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.127 4.127 5 C -0.225 4.225 6 C -0.163 4.163 7 C 0.326 3.674 8 O -0.368 6.368 9 N -0.329 5.329 10 C -0.049 4.049 11 C -0.164 4.164 12 C -0.151 4.151 13 C -0.157 4.157 14 C 0.046 3.954 15 H 0.083 0.917 16 C 0.036 3.964 17 N -0.343 5.343 18 C -0.339 4.339 19 H 0.082 0.918 20 C -0.275 4.275 21 N -0.628 5.628 22 Si 0.795 3.205 23 H -0.193 1.193 24 H -0.221 1.221 25 H -0.230 1.230 26 N -0.059 5.059 27 C -0.043 4.043 28 N -0.140 5.140 29 H 0.072 0.928 30 H 0.105 0.895 31 H 0.054 0.946 32 H 0.102 0.898 33 H 0.078 0.922 34 H 0.100 0.900 35 H 0.084 0.916 36 H 0.208 0.792 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.122 0.878 40 H 0.075 0.925 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.103 0.897 44 H 0.079 0.921 45 H 0.040 0.960 46 H 0.036 0.964 47 H 0.198 0.802 48 H 0.052 0.948 49 H 0.089 0.911 50 H 0.135 0.865 51 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 11.321 12.759 -15.246 22.878 hybrid contribution -1.039 -0.835 1.147 1.759 sum 10.282 11.925 -14.099 21.135 Atomic orbital electron populations 1.21814 0.93787 1.01250 1.02996 1.19559 0.95687 0.96144 0.91344 1.21808 1.01341 0.92981 1.03442 1.22550 1.03042 0.89581 0.97507 1.22512 1.07410 1.00224 0.92317 1.21821 1.10866 0.89438 0.94200 1.17416 0.79972 0.85144 0.84912 1.91248 1.49820 1.36637 1.59104 1.47616 1.67785 1.08431 1.09099 1.22692 0.99078 0.85815 0.97345 1.21817 0.95514 1.01844 0.97216 1.21514 1.03205 0.95623 0.94761 1.21864 0.93969 0.97808 1.02088 1.21442 0.97867 0.96476 0.79654 0.91677 1.20938 0.87412 0.92368 0.95656 1.42342 1.03518 1.23660 1.64733 1.19519 0.92107 0.98565 1.23702 0.91782 1.25338 0.95901 1.02187 1.04069 1.69840 0.99119 1.41023 1.52823 0.85176 0.77638 0.80255 0.77463 1.19320 1.22060 1.22962 1.45601 1.45349 1.09778 1.05195 1.22158 1.01285 0.78779 1.02124 1.73036 1.18763 1.18867 1.03357 0.92759 0.89537 0.94597 0.89807 0.92242 0.90014 0.91650 0.79243 0.86755 0.90320 0.87794 0.92547 0.91069 0.89676 0.89715 0.92147 0.96019 0.96359 0.80227 0.94831 0.91125 0.86540 0.89186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.18 71.98 0.66 -2.01 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -1.82 8.79 71.98 0.63 -1.19 16 4 C 0.03 0.85 6.13 43.05 0.26 1.11 16 5 C -0.20 -5.55 7.82 22.66 0.18 -5.38 16 6 C -0.03 -1.21 6.57 40.79 0.27 -0.94 16 7 C 0.54 21.36 6.96 86.59 0.60 21.97 16 8 O -0.50 -24.25 9.08 -4.11 -0.04 -24.28 16 9 N -0.59 -18.84 2.98 -800.01 -2.38 -21.22 16 10 C 0.07 1.53 5.38 86.22 0.46 2.00 16 11 C -0.13 -2.02 6.06 30.52 0.19 -1.83 16 12 C -0.11 -1.87 5.88 30.62 0.18 -1.69 16 13 C -0.12 -2.76 5.36 30.67 0.16 -2.60 16 14 C 0.15 4.88 2.92 44.97 0.13 5.01 16 15 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 16 C 0.16 7.07 4.88 86.38 0.42 7.49 16 17 N -0.70 -38.44 3.21 -343.44 -1.10 -39.54 16 18 C -0.21 -12.44 9.73 84.03 0.82 -11.62 16 19 H 0.06 3.79 7.83 -2.91 -0.02 3.77 16 20 C -0.08 -5.21 5.50 84.86 0.47 -4.75 16 21 N -0.97 -64.20 13.06 21.65 0.28 -63.92 16 22 Si 0.96 49.97 29.55 68.60 2.03 52.00 16 23 H -0.27 -13.11 7.11 99.48 0.71 -12.41 16 24 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 25 H -0.30 -15.80 7.11 99.48 0.71 -15.09 16 26 N -0.27 -9.61 3.75 -356.03 -1.33 -10.94 16 27 C 0.10 3.09 10.77 127.77 1.38 4.47 16 28 N -0.31 -10.18 11.90 -47.49 -0.57 -10.75 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.09 1.16 8.14 -2.38 -0.02 1.14 16 31 H 0.03 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.06 0.80 7.37 -2.39 -0.02 0.78 16 36 H 0.19 4.16 5.41 -2.92 -0.02 4.14 16 37 H 0.11 2.35 3.47 -2.39 -0.01 2.34 16 38 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 39 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 40 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.02 1.04 6.34 -2.39 -0.02 1.02 16 46 H 0.02 0.79 8.12 -2.38 -0.02 0.77 16 47 H 0.37 21.72 7.08 -92.71 -0.66 21.06 16 48 H 0.24 15.58 8.31 -92.71 -0.77 14.81 16 49 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 50 H 0.12 2.86 8.14 -2.39 -0.02 2.85 16 51 H 0.09 3.06 6.85 -2.39 -0.02 3.05 16 Total: -1.00 -80.24 391.22 3.93 -76.31 By element: Atomic # 1 Polarization: 32.21 SS G_CDS: 0.27 Total: 32.48 kcal Atomic # 6 Polarization: 3.09 SS G_CDS: 6.77 Total: 9.86 kcal Atomic # 7 Polarization: -141.27 SS G_CDS: -5.10 Total: -146.37 kcal Atomic # 8 Polarization: -24.25 SS G_CDS: -0.04 Total: -24.28 kcal Atomic # 14 Polarization: 49.97 SS G_CDS: 2.03 Total: 52.00 kcal Total: -80.24 3.93 -76.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713267091.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.081 kcal (2) G-P(sol) polarization free energy of solvation -80.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds