Wall clock time and date at job start Tue Mar 31 2020 18:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.47176 * 2 1 4 4 N 1.30502 * 125.64547 * 270.03916 * 3 2 1 5 5 C 1.34128 * 109.25395 * 179.97438 * 4 3 2 6 6 C 1.34673 * 108.01984 * 359.73473 * 5 4 3 7 7 N 1.35039 * 125.65255 * 89.99522 * 3 2 1 8 8 C 1.46498 * 126.39784 * 0.03988 * 7 3 2 9 9 H 1.09000 * 109.47452 * 359.97438 * 8 7 3 10 10 C 1.52999 * 109.47304 * 119.99968 * 8 7 3 11 11 C 1.53000 * 109.47368 * 239.99848 * 8 7 3 12 12 C 1.50692 * 109.47438 * 174.99925 * 11 8 7 13 13 O 1.21283 * 120.00007 * 359.97438 * 12 11 8 14 14 N 1.34775 * 120.00265 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00182 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47062 * 186.11218 * 15 14 12 17 17 H 1.09007 * 109.87158 * 297.54859 * 16 15 14 18 18 C 1.54321 * 109.88273 * 176.53923 * 16 15 14 19 19 C 1.55403 * 102.82926 * 218.48128 * 18 16 15 20 20 C 1.54914 * 101.66440 * 35.33575 * 19 18 16 21 21 N 1.47013 * 109.88369 * 58.56933 * 16 15 14 22 22 C 1.36942 * 125.64902 * 298.31921 * 21 16 15 23 23 H 1.07995 * 119.99956 * 337.52701 * 22 21 16 24 24 C 1.38812 * 120.00131 * 157.52031 * 22 21 16 25 25 N 1.31618 * 120.00331 * 161.29298 * 24 22 21 26 26 Si 1.86798 * 120.00028 * 341.29193 * 24 22 21 27 27 H 1.48505 * 109.47085 * 85.70471 * 26 24 22 28 28 H 1.48497 * 109.47362 * 205.70587 * 26 24 22 29 29 H 1.48499 * 109.47158 * 325.70970 * 26 24 22 30 30 H 1.09003 * 109.47037 * 60.00350 * 1 2 3 31 31 H 1.08997 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46897 * 299.99948 * 1 2 3 33 33 H 1.08995 * 109.47524 * 239.99727 * 2 1 3 34 34 H 1.08998 * 109.47286 * 119.99248 * 2 1 3 35 35 H 1.07997 * 125.98340 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.58930 * 180.28285 * 6 5 4 37 37 H 1.09000 * 109.47570 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.46846 * 299.99999 * 10 8 7 39 39 H 1.09000 * 109.47203 * 59.99436 * 10 8 7 40 40 H 1.09008 * 109.46945 * 54.99843 * 11 8 7 41 41 H 1.09002 * 109.47045 * 295.00603 * 11 8 7 42 42 H 0.97000 * 119.99926 * 359.97438 * 14 12 11 43 43 H 1.09002 * 109.47269 * 66.11091 * 15 14 12 44 44 H 1.08993 * 109.47117 * 306.11175 * 15 14 12 45 45 H 1.09007 * 110.71756 * 336.74986 * 18 16 15 46 46 H 1.08996 * 110.72605 * 100.02257 * 18 16 15 47 47 H 1.09000 * 110.88908 * 277.26623 * 19 18 16 48 48 H 1.09001 * 111.04003 * 153.46550 * 19 18 16 49 49 H 1.08999 * 110.36705 * 204.24008 * 20 19 18 50 50 H 1.09000 * 110.46054 * 81.96411 * 20 19 18 51 51 H 0.96995 * 120.00511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2852 2.1382 -1.0605 5 6 2.7139 3.3514 -0.6820 6 6 2.7215 3.3893 0.6642 7 7 2.2947 2.1630 1.0973 8 6 2.1448 1.7371 2.4910 9 1 1.7818 0.7098 2.5200 10 6 3.4991 1.8201 3.1980 11 6 1.1431 2.6516 3.1989 12 6 0.8960 2.1407 4.5948 13 8 1.4646 1.1431 4.9851 14 7 0.0422 2.7918 5.4094 15 6 -0.1977 2.2955 6.7668 16 6 -1.3105 3.1169 7.4210 17 1 -1.0004 4.1583 7.5074 18 6 -1.6309 2.5471 8.8188 19 6 -3.1768 2.6837 8.9011 20 6 -3.5943 2.4037 7.4358 21 7 -2.5379 3.0257 6.6170 22 6 -2.6772 3.4491 5.3222 23 1 -2.0074 4.1966 4.9235 24 6 -3.6792 2.9175 4.5220 25 7 -4.0592 3.5530 3.4339 26 14 -4.4883 1.3001 4.9895 27 1 -5.6007 1.5592 5.9386 28 1 -5.0215 0.6424 3.7695 29 1 -3.4859 0.4128 5.6323 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.9988 4.1579 -1.3413 36 1 3.0110 4.2257 1.2830 37 1 3.3878 1.5028 4.2349 38 1 4.2128 1.1685 2.6937 39 1 3.8618 2.8475 3.1690 40 1 0.2049 2.6612 2.6440 41 1 1.5464 3.6631 3.2481 42 1 -0.4129 3.5895 5.0973 43 1 0.7158 2.3883 7.3543 44 1 -0.4967 1.2483 6.7231 45 1 -1.3325 1.5008 8.8865 46 1 -1.1473 3.1381 9.5965 47 1 -3.4624 3.6913 9.2030 48 1 -3.5999 1.9403 9.5767 49 1 -4.5596 2.8626 7.2221 50 1 -3.6359 1.3304 7.2499 51 1 -4.7591 3.1814 2.8746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713506832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:51 Heat of formation + Delta-G solvation = 40.301799 kcal Electronic energy + Delta-G solvation = -30232.528395 eV Core-core repulsion = 26361.374034 eV Total energy + Delta-G solvation = -3871.154360 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.10606 -39.56321 -38.09432 -35.60907 -34.02586 -33.74957 -32.78410 -30.87700 -30.10545 -29.69672 -28.53120 -27.77875 -25.04952 -24.04639 -23.69807 -22.81924 -21.32999 -20.87575 -19.96341 -19.48309 -19.09618 -17.47844 -17.05472 -16.19096 -15.83788 -15.58463 -15.32575 -15.12400 -15.03942 -14.74566 -14.12600 -13.85475 -13.60857 -13.45990 -13.39627 -13.24205 -13.02101 -12.95432 -12.73562 -12.65132 -12.22746 -11.88248 -11.76514 -11.58119 -11.50211 -11.34825 -11.26197 -11.21195 -11.05604 -11.01185 -10.78178 -10.62344 -10.12396 -10.04563 -9.91642 -9.59814 -9.54078 -9.36176 -8.88506 -8.46139 -8.25204 -7.18986 -6.11737 -3.46813 2.14212 2.75669 2.97605 3.24145 3.25860 3.39139 3.40282 3.72726 4.40011 4.46219 4.48130 4.74979 4.79147 4.83035 5.00133 5.08103 5.14237 5.14847 5.26126 5.29990 5.31495 5.38577 5.45414 5.47387 5.53363 5.60305 5.71614 5.72913 5.80990 5.82339 5.84978 5.89182 5.99432 6.00960 6.03548 6.12821 6.14989 6.20973 6.28233 6.29165 6.46890 6.53758 6.67842 6.72809 6.87437 6.97548 7.29174 7.52841 8.01174 8.11931 8.22303 8.57770 8.67191 9.50395 10.02252 11.03018 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003647 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.898321 B = 7676.751048 C = 8757.833994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.039 4.039 3 C 0.210 3.790 4 N -0.495 5.495 5 C -0.033 4.033 6 C -0.055 4.055 7 N -0.446 5.446 8 C 0.148 3.852 9 H 0.110 0.890 10 C -0.163 4.163 11 C -0.152 4.152 12 C 0.517 3.483 13 O -0.563 6.563 14 N -0.697 5.697 15 C 0.114 3.886 16 C 0.145 3.855 17 H 0.049 0.951 18 C -0.123 4.123 19 C -0.130 4.130 20 C 0.107 3.893 21 N -0.602 5.602 22 C -0.245 4.245 23 H 0.088 0.912 24 C 0.030 3.970 25 N -0.904 5.904 26 Si 0.887 3.113 27 H -0.286 1.286 28 H -0.303 1.303 29 H -0.274 1.274 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.076 0.924 35 H 0.166 0.834 36 H 0.170 0.830 37 H 0.098 0.902 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.106 0.894 41 H 0.096 0.904 42 H 0.413 0.587 43 H 0.053 0.947 44 H 0.062 0.938 45 H 0.068 0.932 46 H 0.069 0.931 47 H 0.069 0.931 48 H 0.065 0.935 49 H 0.058 0.942 50 H 0.027 0.973 51 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.363 -2.019 2.360 11.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.052 4.052 4 N -0.213 5.213 5 C -0.181 4.181 6 C -0.188 4.188 7 N -0.128 5.128 8 C 0.045 3.955 9 H 0.128 0.872 10 C -0.220 4.220 11 C -0.192 4.192 12 C 0.303 3.697 13 O -0.444 6.444 14 N -0.349 5.349 15 C -0.012 4.012 16 C 0.038 3.962 17 H 0.067 0.933 18 C -0.162 4.162 19 C -0.169 4.169 20 C -0.018 4.018 21 N -0.328 5.328 22 C -0.373 4.373 23 H 0.105 0.895 24 C -0.170 4.170 25 N -0.547 5.547 26 Si 0.718 3.282 27 H -0.212 1.212 28 H -0.231 1.231 29 H -0.200 1.200 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.111 0.889 34 H 0.095 0.905 35 H 0.184 0.816 36 H 0.187 0.813 37 H 0.117 0.883 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.253 0.747 43 H 0.071 0.929 44 H 0.081 0.919 45 H 0.086 0.914 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.083 0.917 49 H 0.076 0.924 50 H 0.045 0.955 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.516 -2.945 1.734 12.012 hybrid contribution -0.768 -0.065 0.759 1.081 sum 10.748 -3.010 2.493 11.437 Atomic orbital electron populations 1.21759 0.93618 1.02359 1.03004 1.19977 0.96685 0.87484 1.03675 1.23248 1.03885 0.96685 0.81407 1.70212 1.18463 1.04352 1.28307 1.22214 1.06909 0.96240 0.92740 1.22583 1.09556 0.89949 0.96683 1.45613 1.48404 1.11599 1.07198 1.21164 0.97089 0.99981 0.77313 0.87246 1.22262 0.94443 1.02252 1.03056 1.21958 1.01668 1.00709 0.94906 1.20082 0.79356 0.83822 0.86478 1.90614 1.50944 1.26110 1.76712 1.46156 1.43451 1.30979 1.14329 1.21935 0.97655 0.99328 0.82268 1.21307 0.87407 0.96966 0.90515 0.93326 1.22566 0.96563 1.00982 0.96060 1.22757 0.95330 1.01389 0.97412 1.22004 0.93690 0.96395 0.89662 1.44840 1.04822 1.72195 1.10967 1.18342 1.16742 1.17283 0.84884 0.89451 1.25042 0.98294 0.98121 0.95564 1.69781 1.30527 1.38193 1.16155 0.86919 0.79254 0.85842 0.76173 1.21242 1.23109 1.20025 0.91799 0.91661 0.92388 0.88950 0.90501 0.81632 0.81293 0.88332 0.92281 0.92403 0.87593 0.88524 0.74680 0.92920 0.91932 0.91369 0.91241 0.91234 0.91670 0.92385 0.95546 0.92495 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.89 37.16 0.37 -1.52 16 2 C -0.04 -0.48 6.08 -27.88 -0.17 -0.64 16 3 C 0.21 3.07 7.16 -155.41 -1.11 1.96 16 4 N -0.49 -7.89 11.25 -10.81 -0.12 -8.01 16 5 C -0.03 -0.46 11.87 -17.81 -0.21 -0.67 16 6 C -0.05 -0.70 10.70 -16.56 -0.18 -0.87 16 7 N -0.45 -6.05 2.61 -106.83 -0.28 -6.33 16 8 C 0.15 1.93 2.64 -67.93 -0.18 1.75 16 9 H 0.11 1.51 6.48 -51.93 -0.34 1.18 16 10 C -0.16 -1.91 8.99 37.16 0.33 -1.58 16 11 C -0.15 -2.14 5.18 -27.89 -0.14 -2.28 16 12 C 0.52 8.62 7.55 -10.99 -0.08 8.54 16 13 O -0.56 -10.39 13.95 5.55 0.08 -10.31 16 14 N -0.70 -12.07 4.81 -60.30 -0.29 -12.36 16 15 C 0.11 1.94 5.23 -4.04 -0.02 1.92 16 16 C 0.15 2.48 3.38 -66.96 -0.23 2.26 16 17 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 18 C -0.12 -1.74 6.50 -24.76 -0.16 -1.90 16 19 C -0.13 -1.97 7.09 -24.45 -0.17 -2.15 16 20 C 0.11 2.15 4.73 -2.53 -0.01 2.14 16 21 N -0.60 -12.84 2.90 -162.57 -0.47 -13.32 16 22 C -0.25 -6.05 8.78 -15.06 -0.13 -6.19 16 23 H 0.09 2.21 6.41 -52.49 -0.34 1.87 16 24 C 0.03 0.80 5.46 -17.43 -0.10 0.71 16 25 N -0.90 -25.85 13.97 55.49 0.78 -25.07 16 26 Si 0.89 21.79 24.28 -169.99 -4.13 17.66 16 27 H -0.29 -6.81 6.67 56.52 0.38 -6.44 16 28 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 29 H -0.27 -6.76 6.47 56.52 0.37 -6.39 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.84 7.08 -51.93 -0.37 0.47 16 35 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.17 1.68 8.06 -52.49 -0.42 1.26 16 37 H 0.10 1.30 5.95 -51.93 -0.31 0.99 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.61 7.96 -51.93 -0.41 0.20 16 40 H 0.11 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.10 1.17 8.08 -51.93 -0.42 0.75 16 42 H 0.41 7.40 5.59 -40.82 -0.23 7.18 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 45 H 0.07 0.93 7.83 -51.92 -0.41 0.52 16 46 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 47 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 48 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 49 H 0.06 1.25 6.89 -51.93 -0.36 0.89 16 50 H 0.03 0.57 5.30 -51.93 -0.28 0.29 16 51 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 394.87 15.07 5.95 5.95 Total: -1.00 -30.97 394.87 -9.24 -40.21 By element: Atomic # 1 Polarization: 18.66 SS G_CDS: -8.56 Total: 10.10 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -2.20 Total: 1.48 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.39 Total: -65.10 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.08 Total: -10.31 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.13 Total: 17.66 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -30.97 -9.24 -40.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713506832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.515 kcal (2) G-P(sol) polarization free energy of solvation -30.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds