Wall clock time and date at job start Tue Mar 31 2020 18:47:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50709 * 109.47176 * 2 1 4 4 N 1.30502 * 125.64547 * 270.03916 * 3 2 1 5 5 C 1.34128 * 109.25395 * 179.97438 * 4 3 2 6 6 C 1.34673 * 108.01984 * 359.73473 * 5 4 3 7 7 N 1.35039 * 125.65255 * 89.99522 * 3 2 1 8 8 C 1.46498 * 126.39784 * 0.03988 * 7 3 2 9 9 H 1.09000 * 109.47452 * 359.97438 * 8 7 3 10 10 C 1.52999 * 109.47304 * 119.99968 * 8 7 3 11 11 C 1.53000 * 109.47368 * 239.99848 * 8 7 3 12 12 C 1.50692 * 109.47438 * 174.99925 * 11 8 7 13 13 O 1.21283 * 120.00007 * 359.97438 * 12 11 8 14 14 N 1.34775 * 120.00265 * 180.02562 * 12 11 8 15 15 C 1.46500 * 120.00182 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.47062 * 186.11218 * 15 14 12 17 17 H 1.09007 * 109.87158 * 297.54859 * 16 15 14 18 18 C 1.54321 * 109.88273 * 176.53923 * 16 15 14 19 19 C 1.55403 * 102.82926 * 218.48128 * 18 16 15 20 20 C 1.54914 * 101.66440 * 35.33575 * 19 18 16 21 21 N 1.47013 * 109.88369 * 58.56933 * 16 15 14 22 22 C 1.36942 * 125.64902 * 298.31921 * 21 16 15 23 23 H 1.07995 * 119.99956 * 337.52701 * 22 21 16 24 24 C 1.38812 * 120.00131 * 157.52031 * 22 21 16 25 25 N 1.31618 * 120.00331 * 161.29298 * 24 22 21 26 26 Si 1.86798 * 120.00028 * 341.29193 * 24 22 21 27 27 H 1.48505 * 109.47085 * 85.70471 * 26 24 22 28 28 H 1.48497 * 109.47362 * 205.70587 * 26 24 22 29 29 H 1.48499 * 109.47158 * 325.70970 * 26 24 22 30 30 H 1.09003 * 109.47037 * 60.00350 * 1 2 3 31 31 H 1.08997 * 109.47017 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46897 * 299.99948 * 1 2 3 33 33 H 1.08995 * 109.47524 * 239.99727 * 2 1 3 34 34 H 1.08998 * 109.47286 * 119.99248 * 2 1 3 35 35 H 1.07997 * 125.98340 * 179.97438 * 5 4 3 36 36 H 1.07997 * 126.58930 * 180.28285 * 6 5 4 37 37 H 1.09000 * 109.47570 * 180.02562 * 10 8 7 38 38 H 1.09003 * 109.46846 * 299.99999 * 10 8 7 39 39 H 1.09000 * 109.47203 * 59.99436 * 10 8 7 40 40 H 1.09008 * 109.46945 * 54.99843 * 11 8 7 41 41 H 1.09002 * 109.47045 * 295.00603 * 11 8 7 42 42 H 0.97000 * 119.99926 * 359.97438 * 14 12 11 43 43 H 1.09002 * 109.47269 * 66.11091 * 15 14 12 44 44 H 1.08993 * 109.47117 * 306.11175 * 15 14 12 45 45 H 1.09007 * 110.71756 * 336.74986 * 18 16 15 46 46 H 1.08996 * 110.72605 * 100.02257 * 18 16 15 47 47 H 1.09000 * 110.88908 * 277.26623 * 19 18 16 48 48 H 1.09001 * 111.04003 * 153.46550 * 19 18 16 49 49 H 1.08999 * 110.36705 * 204.24008 * 20 19 18 50 50 H 1.09000 * 110.46054 * 81.96411 * 20 19 18 51 51 H 0.96995 * 120.00511 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 7 2.2852 2.1382 -1.0605 5 6 2.7139 3.3514 -0.6820 6 6 2.7215 3.3893 0.6642 7 7 2.2947 2.1630 1.0973 8 6 2.1448 1.7371 2.4910 9 1 1.7818 0.7098 2.5200 10 6 3.4991 1.8201 3.1980 11 6 1.1431 2.6516 3.1989 12 6 0.8960 2.1407 4.5948 13 8 1.4646 1.1431 4.9851 14 7 0.0422 2.7918 5.4094 15 6 -0.1977 2.2955 6.7668 16 6 -1.3105 3.1169 7.4210 17 1 -1.0004 4.1583 7.5074 18 6 -1.6309 2.5471 8.8188 19 6 -3.1768 2.6837 8.9011 20 6 -3.5943 2.4037 7.4358 21 7 -2.5379 3.0257 6.6170 22 6 -2.6772 3.4491 5.3222 23 1 -2.0074 4.1966 4.9235 24 6 -3.6792 2.9175 4.5220 25 7 -4.0592 3.5530 3.4339 26 14 -4.4883 1.3001 4.9895 27 1 -5.6007 1.5592 5.9386 28 1 -5.0215 0.6424 3.7695 29 1 -3.4859 0.4128 5.6323 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5137 0.8900 35 1 2.9988 4.1579 -1.3413 36 1 3.0110 4.2257 1.2830 37 1 3.3878 1.5028 4.2349 38 1 4.2128 1.1685 2.6937 39 1 3.8618 2.8475 3.1690 40 1 0.2049 2.6612 2.6440 41 1 1.5464 3.6631 3.2481 42 1 -0.4129 3.5895 5.0973 43 1 0.7158 2.3883 7.3543 44 1 -0.4967 1.2483 6.7231 45 1 -1.3325 1.5008 8.8865 46 1 -1.1473 3.1381 9.5965 47 1 -3.4624 3.6913 9.2030 48 1 -3.5999 1.9403 9.5767 49 1 -4.5596 2.8626 7.2221 50 1 -3.6359 1.3304 7.2499 51 1 -4.7591 3.1814 2.8746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713506832.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:47:49 Heat of formation + Delta-G solvation = 21.747963 kcal Electronic energy + Delta-G solvation = -30233.332949 eV Core-core repulsion = 26361.374034 eV Total energy + Delta-G solvation = -3871.958915 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.16272 -40.92271 -39.53455 -36.74431 -35.41833 -34.75534 -34.65224 -32.04806 -31.80041 -30.98244 -29.57394 -28.92434 -26.57236 -25.54777 -24.83410 -23.95339 -22.68039 -21.98963 -21.40882 -20.79367 -20.21638 -19.02811 -18.39712 -17.52082 -17.27445 -17.01217 -16.82405 -16.45562 -16.22640 -15.80862 -15.25909 -15.14946 -15.05476 -14.93646 -14.67601 -14.43606 -14.31324 -14.27557 -14.06871 -13.85559 -13.40541 -13.24553 -13.04112 -12.99318 -12.80116 -12.64594 -12.59567 -12.50451 -12.29923 -12.24612 -12.04545 -12.00723 -11.78108 -11.60066 -11.28972 -11.06982 -10.83837 -10.78213 -10.57310 -9.88157 -9.28954 -9.01653 -8.17630 -5.45012 1.09324 1.24876 1.35786 1.40286 1.62728 1.68975 2.18312 2.37192 2.46899 3.10696 3.28624 3.39242 3.46851 3.67986 3.77062 3.85608 3.90768 3.99691 4.06261 4.16796 4.21404 4.29402 4.30455 4.36481 4.45299 4.47323 4.50181 4.64320 4.65912 4.68621 4.72857 4.80667 4.82887 4.84645 4.90292 5.01064 5.01658 5.01880 5.13500 5.16513 5.22596 5.28484 5.42610 5.48372 5.60508 5.69680 5.87094 6.09232 6.23834 6.63751 6.75481 7.15850 7.26864 7.54896 8.14387 9.00628 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.013174 B = 0.003647 C = 0.003196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2124.898321 B = 7676.751048 C = 8757.833994 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.037 4.037 3 C 0.192 3.808 4 N -0.525 5.525 5 C -0.053 4.053 6 C -0.051 4.051 7 N -0.447 5.447 8 C 0.153 3.847 9 H 0.098 0.902 10 C -0.152 4.152 11 C -0.142 4.142 12 C 0.517 3.483 13 O -0.579 6.579 14 N -0.704 5.704 15 C 0.117 3.883 16 C 0.141 3.859 17 H 0.061 0.939 18 C -0.114 4.114 19 C -0.118 4.118 20 C 0.095 3.905 21 N -0.619 5.619 22 C -0.209 4.209 23 H 0.080 0.920 24 C -0.026 4.026 25 N -0.949 5.949 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.319 1.319 29 H -0.278 1.278 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.089 0.911 35 H 0.186 0.814 36 H 0.200 0.800 37 H 0.086 0.914 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.409 0.591 43 H 0.079 0.921 44 H 0.038 0.962 45 H 0.075 0.925 46 H 0.106 0.894 47 H 0.079 0.921 48 H 0.092 0.908 49 H 0.036 0.964 50 H 0.013 0.987 51 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.102 -1.738 4.823 14.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.070 4.070 4 N -0.245 5.245 5 C -0.200 4.200 6 C -0.184 4.184 7 N -0.129 5.129 8 C 0.050 3.950 9 H 0.116 0.884 10 C -0.210 4.210 11 C -0.183 4.183 12 C 0.303 3.697 13 O -0.461 6.461 14 N -0.355 5.355 15 C -0.008 4.008 16 C 0.034 3.966 17 H 0.078 0.922 18 C -0.152 4.152 19 C -0.156 4.156 20 C -0.029 4.029 21 N -0.345 5.345 22 C -0.338 4.338 23 H 0.097 0.903 24 C -0.221 4.221 25 N -0.596 5.596 26 Si 0.763 3.237 27 H -0.205 1.205 28 H -0.249 1.249 29 H -0.204 1.204 30 H 0.071 0.929 31 H 0.102 0.898 32 H 0.053 0.947 33 H 0.122 0.878 34 H 0.107 0.893 35 H 0.203 0.797 36 H 0.217 0.783 37 H 0.104 0.896 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.103 0.897 41 H 0.139 0.861 42 H 0.249 0.751 43 H 0.097 0.903 44 H 0.056 0.944 45 H 0.093 0.907 46 H 0.125 0.875 47 H 0.098 0.902 48 H 0.110 0.890 49 H 0.054 0.946 50 H 0.031 0.969 51 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 13.276 -2.679 4.259 14.198 hybrid contribution -1.234 -0.099 0.059 1.239 sum 12.043 -2.777 4.318 13.092 Atomic orbital electron populations 1.21708 0.94275 1.03041 1.01210 1.20045 0.95965 0.86760 1.04832 1.23648 1.04215 0.97577 0.81572 1.70187 1.19468 1.05537 1.29304 1.22682 1.07263 0.96276 0.93823 1.23090 1.08306 0.90178 0.96808 1.45672 1.48278 1.11923 1.07052 1.21095 0.97620 0.99093 0.77209 0.88352 1.22158 0.93500 1.03425 1.01908 1.21884 1.01118 1.02235 0.93052 1.20410 0.78796 0.83389 0.87117 1.90607 1.51555 1.26726 1.77251 1.46231 1.43568 1.30929 1.14820 1.21898 0.98726 0.97719 0.82483 1.21564 0.85527 0.97840 0.91620 0.92169 1.22609 0.95845 1.01976 0.94744 1.22719 0.96084 1.02860 0.93952 1.22096 0.92633 0.95134 0.93053 1.45055 1.07420 1.71783 1.10239 1.18441 1.14344 1.15009 0.85966 0.90293 1.25473 1.00079 1.00303 0.96226 1.69876 1.32252 1.39613 1.17892 0.86210 0.78731 0.83709 0.75085 1.20469 1.24885 1.20375 0.92928 0.89757 0.94699 0.87760 0.89294 0.79677 0.78319 0.89574 0.91703 0.90739 0.89744 0.86099 0.75143 0.90316 0.94387 0.90674 0.87512 0.90201 0.88987 0.94569 0.96894 0.93302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.73 9.89 71.98 0.71 -3.02 16 2 C -0.04 -0.90 6.08 29.85 0.18 -0.71 16 3 C 0.19 5.58 7.16 138.13 0.99 6.57 16 4 N -0.53 -16.69 11.25 -188.12 -2.12 -18.81 16 5 C -0.05 -1.43 11.87 83.52 0.99 -0.44 16 6 C -0.05 -1.22 10.70 83.09 0.89 -0.33 16 7 N -0.45 -11.75 2.61 -491.91 -1.28 -13.03 16 8 C 0.15 3.87 2.64 44.99 0.12 3.98 16 9 H 0.10 2.71 6.48 -2.39 -0.02 2.69 16 10 C -0.15 -3.29 8.99 71.98 0.65 -2.64 16 11 C -0.14 -3.91 5.18 29.85 0.15 -3.76 16 12 C 0.52 16.81 7.55 87.65 0.66 17.47 16 13 O -0.58 -20.86 13.95 -3.04 -0.04 -20.90 16 14 N -0.70 -23.66 4.81 -463.07 -2.23 -25.88 16 15 C 0.12 3.75 5.23 86.38 0.45 4.20 16 16 C 0.14 4.41 3.38 45.34 0.15 4.56 16 17 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 18 C -0.11 -2.70 6.50 31.87 0.21 -2.49 16 19 C -0.12 -3.13 7.09 32.07 0.23 -2.90 16 20 C 0.10 3.69 4.73 86.86 0.41 4.10 16 21 N -0.62 -25.66 2.90 -668.27 -1.94 -27.59 16 22 C -0.21 -10.32 8.78 84.03 0.74 -9.58 16 23 H 0.08 4.01 6.41 -2.91 -0.02 3.99 16 24 C -0.03 -1.40 5.46 84.86 0.46 -0.94 16 25 N -0.95 -56.17 13.97 21.65 0.30 -55.87 16 26 Si 0.93 46.14 24.28 68.60 1.67 47.81 16 27 H -0.28 -13.21 6.67 99.48 0.66 -12.55 16 28 H -0.32 -16.51 7.11 99.48 0.71 -15.81 16 29 H -0.28 -13.66 6.47 99.48 0.64 -13.02 16 30 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 34 H 0.09 1.89 7.08 -2.39 -0.02 1.87 16 35 H 0.19 3.93 8.06 -2.91 -0.02 3.91 16 36 H 0.20 3.35 8.06 -2.91 -0.02 3.33 16 37 H 0.09 2.13 5.95 -2.39 -0.01 2.12 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.35 7.96 -2.39 -0.02 1.33 16 40 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 41 H 0.12 2.69 8.08 -2.39 -0.02 2.67 16 42 H 0.41 14.40 5.59 -92.71 -0.52 13.88 16 43 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 44 H 0.04 1.41 8.08 -2.39 -0.02 1.39 16 45 H 0.07 1.72 7.83 -2.38 -0.02 1.70 16 46 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 47 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 48 H 0.09 1.99 8.14 -2.39 -0.02 1.97 16 49 H 0.04 1.54 6.89 -2.39 -0.02 1.52 16 50 H 0.01 0.55 5.30 -2.39 -0.01 0.54 16 51 H 0.26 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -68.93 394.87 2.65 -66.27 By element: Atomic # 1 Polarization: 33.63 SS G_CDS: 0.29 Total: 33.93 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 8.00 Total: 14.07 kcal Atomic # 7 Polarization: -133.92 SS G_CDS: -7.26 Total: -141.18 kcal Atomic # 8 Polarization: -20.86 SS G_CDS: -0.04 Total: -20.90 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 1.67 Total: 47.81 kcal Total: -68.93 2.65 -66.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713506832.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.020 kcal (2) G-P(sol) polarization free energy of solvation -68.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.272 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds