Wall clock time and date at job start Tue Mar 31 2020 20:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.47113 * 2 1 4 4 C 1.50694 * 109.47244 * 120.00663 * 2 1 3 5 5 N 1.30498 * 125.64834 * 300.01989 * 4 2 1 6 6 C 1.34128 * 109.25869 * 179.97438 * 5 4 2 7 7 C 1.34671 * 108.01846 * 359.97438 * 6 5 4 8 8 N 1.35039 * 125.65250 * 120.00087 * 4 2 1 9 9 C 1.46507 * 126.39891 * 0.02562 * 8 4 2 10 10 C 1.50697 * 109.47047 * 84.99630 * 9 8 4 11 11 O 1.21283 * 120.00261 * 0.02562 * 10 9 8 12 12 N 1.34775 * 119.99714 * 179.97438 * 10 9 8 13 13 C 1.47018 * 125.65040 * 359.70126 * 12 10 9 14 14 C 1.54320 * 107.27714 * 180.96507 * 13 12 10 15 15 C 1.55157 * 102.86291 * 22.52267 * 14 13 12 16 16 H 1.09004 * 111.03354 * 82.39246 * 15 14 13 17 17 C 1.52991 * 111.00411 * 206.22966 * 15 14 13 18 18 N 1.46500 * 109.47282 * 287.19632 * 17 15 14 19 19 C 1.46500 * 119.99864 * 90.00097 * 18 17 15 20 20 C 1.36942 * 120.00186 * 270.00041 * 18 17 15 21 21 H 1.07994 * 119.99776 * 23.22713 * 20 18 17 22 22 C 1.38811 * 120.00186 * 203.22661 * 20 18 17 23 23 N 1.31620 * 119.99807 * 13.88393 * 22 20 18 24 24 Si 1.86793 * 120.00208 * 193.88778 * 22 20 18 25 25 H 1.48501 * 109.47299 * 59.99803 * 24 22 20 26 26 H 1.48497 * 109.47150 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47143 * 300.00087 * 24 22 20 28 28 C 1.47426 * 125.64888 * 180.02562 * 12 10 9 29 29 H 1.09007 * 109.46848 * 299.99655 * 1 2 3 30 30 H 1.08999 * 109.47502 * 59.99423 * 1 2 3 31 31 H 1.09006 * 109.47214 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46848 * 240.00345 * 2 1 3 33 33 H 1.08999 * 109.47408 * 300.00635 * 3 2 1 34 34 H 1.08997 * 109.46957 * 60.00315 * 3 2 1 35 35 H 1.08997 * 109.47122 * 180.02562 * 3 2 1 36 36 H 1.07996 * 125.99146 * 179.97438 * 6 5 4 37 37 H 1.08001 * 126.59020 * 180.02562 * 7 6 5 38 38 H 1.08995 * 109.47064 * 205.00225 * 9 8 4 39 39 H 1.09002 * 109.46504 * 325.00436 * 9 8 4 40 40 H 1.09004 * 109.87949 * 300.50399 * 13 12 10 41 41 H 1.08993 * 109.88594 * 61.67526 * 13 12 10 42 42 H 1.08997 * 110.92127 * 264.11014 * 14 13 12 43 43 H 1.08992 * 110.74236 * 140.85232 * 14 13 12 44 44 H 1.08997 * 109.47202 * 47.19653 * 17 15 14 45 45 H 1.09001 * 109.47214 * 167.19717 * 17 15 14 46 46 H 1.08994 * 109.47236 * 95.16843 * 19 18 17 47 47 H 1.09003 * 109.47181 * 215.16198 * 19 18 17 48 48 H 1.09003 * 109.47170 * 335.16306 * 19 18 17 49 49 H 0.97000 * 119.99629 * 180.02562 * 23 22 20 50 50 H 1.09004 * 110.37102 * 274.67945 * 28 12 10 51 51 H 1.09011 * 110.36551 * 36.99635 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 7 1.7857 -0.3624 2.4636 6 6 2.3927 -1.2217 3.2956 7 6 3.0397 -2.1374 2.5496 8 7 2.8120 -1.8131 1.2393 9 6 3.3190 -2.5290 0.0659 10 6 4.5911 -1.8761 -0.4099 11 8 5.0313 -0.9085 0.1739 12 7 5.2403 -2.3683 -1.4836 13 6 4.8240 -3.5343 -2.2764 14 6 5.8801 -3.7365 -3.3833 15 6 7.1305 -3.0254 -2.8019 16 1 7.6653 -3.6771 -2.1109 17 6 8.0549 -2.5400 -3.9201 18 7 8.7337 -3.6884 -4.5256 19 6 8.1257 -4.3823 -5.6635 20 6 9.9367 -4.1133 -4.0278 21 1 10.2111 -3.8831 -3.0090 22 6 10.8033 -4.8397 -4.8328 23 7 10.6076 -4.8895 -6.1334 24 14 12.2473 -5.7467 -4.0703 25 1 11.7444 -6.7448 -3.0924 26 1 13.0141 -6.4411 -5.1357 27 1 13.1311 -4.7758 -3.3764 28 6 6.4891 -1.8306 -2.0536 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.6766 1.9564 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 2.3671 -1.1856 4.3747 37 1 3.6258 -2.9677 2.9148 38 1 3.5205 -3.5664 0.3323 39 1 2.5743 -2.4960 -0.7294 40 1 4.7777 -4.4179 -1.6399 41 1 3.8491 -3.3476 -2.7266 42 1 5.5648 -3.2632 -4.3132 43 1 6.0773 -4.7970 -3.5395 44 1 7.4671 -2.0239 -4.6791 45 1 8.7963 -1.8559 -3.5074 46 1 8.5348 -3.9849 -6.5923 47 1 8.3434 -5.4484 -5.5976 48 1 7.0464 -4.2302 -5.6474 49 1 11.2130 -5.3975 -6.6959 50 1 6.2706 -1.0205 -2.7495 51 1 7.1492 -1.4817 -1.2593 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713756654.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:10 Heat of formation + Delta-G solvation = 48.893293 kcal Electronic energy + Delta-G solvation = -29298.535796 eV Core-core repulsion = 25427.753991 eV Total energy + Delta-G solvation = -3870.781805 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.36317 -40.09061 -37.81777 -35.56232 -35.46010 -34.20062 -32.44533 -30.62540 -29.47305 -29.01848 -28.06853 -27.34774 -26.04674 -25.33055 -23.32815 -22.98111 -21.54370 -21.27740 -20.02503 -19.93970 -18.99501 -17.66291 -17.39237 -16.67021 -16.24353 -15.80959 -15.38751 -14.99676 -14.70140 -14.45795 -14.41321 -13.86116 -13.75245 -13.66791 -13.55395 -13.33530 -13.15090 -12.95289 -12.84458 -12.54886 -12.33422 -12.19475 -12.08808 -11.71911 -11.47537 -11.40120 -11.19128 -11.16627 -10.96365 -10.79510 -10.55576 -10.49016 -10.43726 -10.14296 -10.07266 -9.92930 -9.90098 -9.60131 -8.79426 -8.59361 -8.46296 -6.80021 -5.77953 -3.25298 1.78975 2.28965 2.38194 2.92872 3.06840 3.34630 3.40497 3.41046 4.10588 4.13959 4.26668 4.42810 4.44352 4.57409 4.65837 4.81987 4.86216 4.90975 4.97936 5.03253 5.23137 5.31880 5.34361 5.39829 5.44072 5.48417 5.58075 5.62289 5.66709 5.74046 5.77349 5.83160 5.92621 5.98255 6.02164 6.10807 6.12253 6.17221 6.27171 6.37881 6.62861 6.63875 6.67250 6.79459 6.96125 7.28226 7.30822 7.66426 7.75234 7.86749 7.99561 8.34457 9.18212 9.81464 10.29965 11.26498 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.022960 B = 0.002241 C = 0.002152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.245433 B =12492.483304 C =13006.269534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.007 4.007 3 C -0.139 4.139 4 C 0.228 3.772 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.052 4.052 8 N -0.442 5.442 9 C 0.088 3.912 10 C 0.508 3.492 11 O -0.523 6.523 12 N -0.611 5.611 13 C 0.094 3.906 14 C -0.117 4.117 15 C -0.118 4.118 16 H 0.084 0.916 17 C 0.163 3.837 18 N -0.599 5.599 19 C 0.161 3.839 20 C -0.258 4.258 21 H 0.067 0.933 22 C 0.003 3.997 23 N -0.906 5.906 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.111 3.889 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.061 0.939 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.122 0.878 39 H 0.119 0.881 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.030 0.970 47 H 0.038 0.962 48 H 0.001 0.999 49 H 0.253 0.747 50 H 0.069 0.931 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.311 3.923 9.762 22.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.035 4.035 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.184 4.184 8 N -0.124 5.124 9 C -0.039 4.039 10 C 0.294 3.706 11 O -0.399 6.399 12 N -0.346 5.346 13 C -0.029 4.029 14 C -0.155 4.155 15 C -0.140 4.140 16 H 0.102 0.898 17 C 0.034 3.966 18 N -0.321 5.321 19 C 0.017 3.983 20 C -0.387 4.387 21 H 0.085 0.915 22 C -0.195 4.195 23 N -0.551 5.551 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C -0.012 4.012 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.080 0.920 34 H 0.086 0.914 35 H 0.078 0.922 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.140 0.860 39 H 0.137 0.863 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.063 0.937 50 H 0.087 0.913 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -20.422 4.961 10.125 23.328 hybrid contribution 1.541 -1.605 0.150 2.229 sum -18.881 3.357 10.276 21.757 Atomic orbital electron populations 1.21792 0.93053 1.02023 1.02831 1.19529 0.96416 0.96177 0.90661 1.21756 1.01752 0.93785 1.02412 1.23147 0.96440 0.88206 0.95674 1.70166 1.24615 1.26792 0.98906 1.22215 1.01440 0.94331 0.99494 1.22638 1.08047 1.05148 0.82544 1.44866 1.38387 1.23302 1.05869 1.21651 0.95835 0.97517 0.88870 1.20254 0.85650 0.84717 0.80021 1.90790 1.67130 1.26557 1.55406 1.48578 1.26335 1.31102 1.28580 1.22239 0.99002 0.87785 0.93865 1.22633 0.93789 1.02596 0.96483 1.23244 0.96059 0.95408 0.99286 0.89765 1.20604 0.93679 0.89974 0.92329 1.43839 1.20822 1.31345 1.36086 1.20824 0.90567 0.96591 0.90363 1.19113 0.93641 1.31022 0.94964 0.91548 1.25015 0.97807 1.01684 0.95018 1.70058 1.38748 1.43720 1.02568 0.86360 0.82354 0.79879 0.78086 1.21140 1.21630 1.20898 1.22405 0.84127 0.97331 0.97293 0.91253 0.91810 0.92860 0.90723 0.91997 0.91438 0.92163 0.81382 0.81087 0.86036 0.86324 0.91463 0.91544 0.90684 0.89643 0.94257 0.93118 0.95194 0.94338 0.98067 0.93677 0.91312 0.90637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 9.18 37.16 0.34 -0.77 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.43 9.18 37.16 0.34 -1.09 16 4 C 0.23 2.80 6.40 -155.42 -0.99 1.81 16 5 N -0.49 -6.68 11.25 -10.82 -0.12 -6.80 16 6 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 7 C -0.05 -0.57 11.58 -16.56 -0.19 -0.76 16 8 N -0.44 -4.99 2.24 -115.19 -0.26 -5.25 16 9 C 0.09 0.78 5.36 -5.19 -0.03 0.75 16 10 C 0.51 6.34 7.92 -10.99 -0.09 6.26 16 11 O -0.52 -8.84 16.68 5.55 0.09 -8.75 16 12 N -0.61 -7.22 3.33 -170.54 -0.57 -7.79 16 13 C 0.09 0.88 6.48 -3.07 -0.02 0.86 16 14 C -0.12 -1.43 5.10 -24.90 -0.13 -1.56 16 15 C -0.12 -1.76 3.25 -88.49 -0.29 -2.05 16 16 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 17 C 0.16 2.99 5.15 -4.05 -0.02 2.97 16 18 N -0.60 -13.92 2.89 -181.13 -0.52 -14.45 16 19 C 0.16 3.65 8.75 59.85 0.52 4.18 16 20 C -0.26 -6.76 9.65 -15.06 -0.15 -6.90 16 21 H 0.07 1.71 7.87 -52.49 -0.41 1.30 16 22 C 0.00 0.09 5.08 -17.43 -0.09 0.00 16 23 N -0.91 -25.68 10.77 55.49 0.60 -25.08 16 24 Si 0.90 21.32 29.58 -169.99 -5.03 16.29 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 27 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 28 C 0.11 1.50 6.38 -2.54 -0.02 1.49 16 29 H 0.07 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.66 6.85 -51.92 -0.36 0.30 16 33 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.17 1.57 8.06 -52.49 -0.42 1.14 16 37 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 38 H 0.12 0.77 8.13 -51.93 -0.42 0.34 16 39 H 0.12 0.75 7.28 -51.93 -0.38 0.37 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.07 0.91 7.54 -51.93 -0.39 0.51 16 43 H 0.08 1.13 8.14 -51.93 -0.42 0.70 16 44 H 0.04 0.68 7.90 -51.93 -0.41 0.27 16 45 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 46 H 0.03 0.75 7.33 -51.93 -0.38 0.37 16 47 H 0.04 0.94 7.38 -51.93 -0.38 0.56 16 48 H 0.00 0.02 6.54 -51.93 -0.34 -0.32 16 49 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 50 H 0.07 0.90 8.04 -51.93 -0.42 0.49 16 51 H 0.08 1.13 8.04 -51.92 -0.42 0.71 16 LS Contribution 409.39 15.07 6.17 6.17 Total: -1.00 -33.53 409.39 -9.88 -43.41 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -8.93 Total: -2.01 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: -1.31 Total: 4.26 kcal Atomic # 7 Polarization: -58.50 SS G_CDS: -0.87 Total: -59.37 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: 0.09 Total: -8.75 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.53 -9.88 -43.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713756654.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.306 kcal (2) G-P(sol) polarization free energy of solvation -33.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds