Wall clock time and date at job start Tue Mar 31 2020 20:06:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47197 * 2 1 4 4 C 1.50707 * 109.47321 * 120.00296 * 2 1 3 5 5 N 1.30502 * 125.64945 * 300.04176 * 4 2 1 6 6 C 1.34122 * 109.25561 * 179.97438 * 5 4 2 7 7 C 1.34670 * 108.02077 * 359.73056 * 6 5 4 8 8 N 1.35038 * 125.65063 * 119.99245 * 4 2 1 9 9 C 1.46497 * 126.39963 * 0.04830 * 8 4 2 10 10 C 1.50700 * 109.47483 * 84.99028 * 9 8 4 11 11 O 1.21279 * 119.99951 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00044 * 180.02562 * 10 9 8 13 13 C 1.47293 * 125.79131 * 0.02562 * 12 10 9 14 14 C 1.54330 * 107.30296 * 178.92371 * 13 12 10 15 15 C 1.55155 * 102.94392 * 337.81732 * 14 13 12 16 16 H 1.09003 * 111.03529 * 277.41726 * 15 14 13 17 17 C 1.52994 * 111.00403 * 153.57895 * 15 14 13 18 18 N 1.46490 * 109.47472 * 72.80320 * 17 15 14 19 19 C 1.46501 * 120.00131 * 89.99868 * 18 17 15 20 20 C 1.36939 * 120.00270 * 270.00025 * 18 17 15 21 21 H 1.08010 * 119.99891 * 22.84182 * 20 18 17 22 22 C 1.38812 * 120.00710 * 202.84511 * 20 18 17 23 23 N 1.31623 * 119.99462 * 13.23670 * 22 20 18 24 24 Si 1.86793 * 120.00264 * 193.23921 * 22 20 18 25 25 H 1.48497 * 109.47397 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47111 * 119.99944 * 24 22 20 27 27 H 1.48502 * 109.47242 * 239.99894 * 24 22 20 28 28 C 1.47422 * 125.64760 * 180.02562 * 12 10 9 29 29 H 1.08998 * 109.46725 * 299.99534 * 1 2 3 30 30 H 1.08991 * 109.47196 * 59.99505 * 1 2 3 31 31 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47105 * 240.00143 * 2 1 3 33 33 H 1.09002 * 109.46976 * 60.00064 * 3 2 1 34 34 H 1.08998 * 109.47198 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47451 * 300.00338 * 3 2 1 36 36 H 1.08005 * 125.98806 * 179.97438 * 6 5 4 37 37 H 1.07997 * 126.58910 * 180.27877 * 7 6 5 38 38 H 1.09008 * 109.47000 * 324.99047 * 9 8 4 39 39 H 1.08999 * 109.47399 * 204.99723 * 9 8 4 40 40 H 1.09000 * 109.85778 * 59.50022 * 13 12 10 41 41 H 1.08999 * 110.00088 * 298.43067 * 13 12 10 42 42 H 1.08997 * 110.71628 * 219.45137 * 14 13 12 43 43 H 1.09000 * 110.86865 * 96.25135 * 14 13 12 44 44 H 1.09007 * 109.46852 * 192.80710 * 17 15 14 45 45 H 1.09000 * 109.46901 * 312.79623 * 17 15 14 46 46 H 1.09002 * 109.47088 * 95.13027 * 19 18 17 47 47 H 1.09011 * 109.47168 * 215.12780 * 19 18 17 48 48 H 1.08998 * 109.47303 * 335.12997 * 19 18 17 49 49 H 0.97000 * 119.99829 * 180.02562 * 23 22 20 50 50 H 1.09001 * 110.37059 * 85.26648 * 28 12 10 51 51 H 1.08995 * 110.37147 * 323.04655 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7855 -0.3626 2.4638 6 6 2.3926 -1.2217 3.2957 7 6 3.0355 -2.1402 2.5497 8 7 2.8120 -1.8131 1.2395 9 6 3.3191 -2.5289 0.0662 10 6 4.5914 -1.8761 -0.4094 11 8 5.0315 -0.9086 0.1745 12 7 5.2402 -2.3676 -1.4837 13 6 4.8218 -3.5304 -2.2851 14 6 5.8527 -3.6998 -3.4211 15 6 6.4809 -2.2856 -3.5340 16 1 5.8587 -1.6285 -4.1417 17 6 7.9032 -2.3605 -4.0926 18 7 7.8506 -2.6774 -5.5219 19 6 7.7822 -1.5976 -6.5096 20 6 7.8653 -3.9830 -5.9347 21 1 7.5496 -4.7660 -5.2611 22 6 8.2861 -4.3003 -7.2189 23 7 8.9111 -3.4000 -7.9478 24 14 7.9653 -6.0047 -7.9126 25 1 7.2519 -6.8247 -6.9007 26 1 7.1316 -5.8922 -9.1363 27 1 9.2578 -6.6524 -8.2519 28 6 6.4890 -1.8298 -2.0535 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.3668 -1.1857 4.3749 37 1 3.6175 -2.9734 2.9150 38 1 2.5745 -2.4960 -0.7293 39 1 3.5206 -3.5664 0.3325 40 1 3.8321 -3.3533 -2.7060 41 1 4.8052 -4.4254 -1.6631 42 1 5.3584 -3.9778 -4.3520 43 1 6.6089 -4.4374 -3.1524 44 1 8.4000 -1.4005 -3.9513 45 1 8.4591 -3.1378 -3.5682 46 1 8.7862 -1.3666 -6.8656 47 1 7.1623 -1.9121 -7.3494 48 1 7.3471 -0.7108 -6.0489 49 1 9.2048 -3.6215 -8.8454 50 1 7.3526 -2.2445 -1.5337 51 1 6.4964 -0.7416 -1.9917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713756655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:17 Heat of formation + Delta-G solvation = 48.828307 kcal Electronic energy + Delta-G solvation = -29405.811374 eV Core-core repulsion = 25535.026750 eV Total energy + Delta-G solvation = -3870.784623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.35560 -40.05326 -37.77922 -35.53611 -35.45294 -34.19150 -32.40680 -30.68331 -29.37748 -29.00043 -28.05861 -27.31795 -26.01086 -25.33812 -23.25952 -22.94368 -21.60174 -21.36831 -19.97198 -19.80356 -18.94126 -17.63813 -17.36110 -16.87679 -16.25788 -15.59017 -15.34586 -15.04887 -14.72905 -14.47675 -14.30100 -13.86499 -13.76343 -13.58706 -13.46459 -13.24879 -13.08428 -13.03024 -12.88736 -12.59525 -12.30371 -12.22668 -11.98368 -11.69176 -11.44212 -11.37274 -11.17277 -11.15726 -10.90597 -10.77080 -10.51482 -10.46589 -10.43058 -10.20280 -10.06309 -9.91409 -9.86187 -9.59305 -8.77875 -8.60720 -8.45728 -6.80828 -5.78411 -3.25568 1.79871 2.30132 2.38865 2.94398 3.07563 3.31232 3.37824 3.40300 4.12409 4.15980 4.28000 4.41998 4.45668 4.59066 4.73795 4.83022 4.87511 4.93688 5.04442 5.06629 5.25947 5.32586 5.38346 5.40793 5.47672 5.49828 5.62011 5.64248 5.69775 5.76782 5.77280 5.84057 5.98418 6.00640 6.05813 6.13060 6.18815 6.21049 6.39421 6.41553 6.57252 6.64380 6.70063 6.82672 6.96851 7.31165 7.32701 7.67667 7.74559 7.87952 8.00376 8.33237 9.17077 9.80971 10.30274 11.26379 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002323 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.863357 B =12049.905676 C =12263.692110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.139 4.139 4 C 0.229 3.771 5 N -0.487 5.487 6 C -0.027 4.027 7 C -0.053 4.053 8 N -0.442 5.442 9 C 0.088 3.912 10 C 0.508 3.492 11 O -0.525 6.525 12 N -0.611 5.611 13 C 0.092 3.908 14 C -0.112 4.112 15 C -0.116 4.116 16 H 0.078 0.922 17 C 0.162 3.838 18 N -0.600 5.600 19 C 0.161 3.839 20 C -0.254 4.254 21 H 0.070 0.930 22 C 0.001 3.999 23 N -0.906 5.906 24 Si 0.902 3.098 25 H -0.278 1.278 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.111 3.889 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.169 0.831 37 H 0.171 0.829 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.067 0.933 41 H 0.066 0.934 42 H 0.089 0.911 43 H 0.076 0.924 44 H 0.039 0.961 45 H 0.050 0.950 46 H 0.031 0.969 47 H 0.040 0.960 48 H -0.003 1.003 49 H 0.252 0.748 50 H 0.068 0.932 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.349 1.512 15.610 21.257 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.029 4.029 3 C -0.197 4.197 4 C -0.033 4.033 5 N -0.205 5.205 6 C -0.175 4.175 7 C -0.185 4.185 8 N -0.124 5.124 9 C -0.039 4.039 10 C 0.294 3.706 11 O -0.401 6.401 12 N -0.346 5.346 13 C -0.031 4.031 14 C -0.150 4.150 15 C -0.138 4.138 16 H 0.096 0.904 17 C 0.034 3.966 18 N -0.322 5.322 19 C 0.017 3.983 20 C -0.383 4.383 21 H 0.088 0.912 22 C -0.198 4.198 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.203 1.203 26 H -0.217 1.217 27 H -0.218 1.218 28 C -0.012 4.012 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.186 0.814 37 H 0.189 0.811 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.085 0.915 41 H 0.084 0.916 42 H 0.108 0.892 43 H 0.095 0.905 44 H 0.057 0.943 45 H 0.069 0.931 46 H 0.049 0.951 47 H 0.059 0.941 48 H 0.016 0.984 49 H 0.062 0.938 50 H 0.087 0.913 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.488 2.635 15.950 21.709 hybrid contribution 0.543 -1.922 -0.739 2.130 sum -13.946 0.713 15.211 20.649 Atomic orbital electron populations 1.21789 0.93035 1.02030 1.02838 1.19539 0.96441 0.96201 0.90671 1.21752 1.01730 0.93783 1.02422 1.23162 0.96284 0.88221 0.95668 1.70172 1.24560 1.26869 0.98909 1.22213 1.01504 0.94281 0.99481 1.22618 1.08267 1.05053 0.82563 1.44866 1.38436 1.23232 1.05866 1.21651 0.95914 0.97453 0.88875 1.20242 0.85539 0.84635 0.80180 1.90784 1.67319 1.26518 1.55447 1.48643 1.26163 1.31427 1.28350 1.22347 0.99530 0.87536 0.93664 1.22584 0.97293 0.98115 0.97005 1.23206 1.02040 0.95952 0.92623 0.90404 1.20613 0.91063 0.98552 0.86422 1.43871 1.85691 1.03487 0.99149 1.20799 0.99466 0.86926 0.91127 1.19211 1.37475 0.83833 0.97788 0.91186 1.25044 0.98601 0.97450 0.98672 1.70081 1.40917 1.33559 1.10536 0.86237 0.77527 0.84102 0.78959 1.20332 1.21679 1.21787 1.22396 0.85195 0.99342 0.94259 0.91279 0.91766 0.92860 0.90667 0.91458 0.92185 0.91958 0.81406 0.81129 0.86282 0.86064 0.91511 0.91570 0.89218 0.90492 0.94261 0.93144 0.95079 0.94119 0.98412 0.93795 0.91336 0.90783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.16 0.34 -0.84 16 2 C -0.01 -0.08 3.25 -91.77 -0.30 -0.38 16 3 C -0.14 -1.49 9.17 37.15 0.34 -1.15 16 4 C 0.23 2.87 6.40 -155.41 -0.99 1.88 16 5 N -0.49 -6.74 11.25 -10.81 -0.12 -6.86 16 6 C -0.03 -0.33 11.87 -17.81 -0.21 -0.54 16 7 C -0.05 -0.58 11.58 -16.56 -0.19 -0.77 16 8 N -0.44 -5.03 2.24 -115.19 -0.26 -5.29 16 9 C 0.09 0.79 5.38 -5.19 -0.03 0.76 16 10 C 0.51 6.40 7.92 -10.98 -0.09 6.31 16 11 O -0.52 -8.85 16.68 5.56 0.09 -8.76 16 12 N -0.61 -7.34 3.34 -170.30 -0.57 -7.91 16 13 C 0.09 0.92 6.51 -2.91 -0.02 0.90 16 14 C -0.11 -1.49 5.29 -24.89 -0.13 -1.63 16 15 C -0.12 -1.73 3.26 -88.47 -0.29 -2.02 16 16 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 17 C 0.16 2.96 5.17 -4.05 -0.02 2.94 16 18 N -0.60 -13.84 2.91 -181.12 -0.53 -14.36 16 19 C 0.16 3.77 8.98 59.85 0.54 4.31 16 20 C -0.25 -6.37 9.16 -15.06 -0.14 -6.51 16 21 H 0.07 1.68 7.09 -52.48 -0.37 1.31 16 22 C 0.00 0.02 5.10 -17.43 -0.09 -0.07 16 23 N -0.91 -25.51 10.71 55.49 0.59 -24.91 16 24 Si 0.90 20.72 29.57 -169.99 -5.03 15.69 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 C 0.11 1.49 6.37 -2.53 -0.02 1.48 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.72 6.85 -51.93 -0.36 0.36 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.17 1.55 8.06 -52.48 -0.42 1.12 16 37 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.12 0.81 7.28 -51.92 -0.38 0.43 16 39 H 0.12 0.76 8.13 -51.93 -0.42 0.34 16 40 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.08 1.07 7.75 -51.93 -0.40 0.67 16 44 H 0.04 0.70 8.07 -51.93 -0.42 0.28 16 45 H 0.05 0.93 7.87 -51.93 -0.41 0.52 16 46 H 0.03 0.80 7.34 -51.93 -0.38 0.42 16 47 H 0.04 1.02 7.34 -51.92 -0.38 0.64 16 48 H 0.00 -0.06 8.03 -51.93 -0.42 -0.47 16 49 H 0.25 6.90 8.31 -40.82 -0.34 6.56 16 50 H 0.07 0.92 8.04 -51.93 -0.42 0.50 16 51 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 LS Contribution 410.26 15.07 6.18 6.18 Total: -1.00 -32.87 410.26 -9.91 -42.78 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -8.98 Total: -1.25 kcal Atomic # 6 Polarization: 5.98 SS G_CDS: -1.29 Total: 4.68 kcal Atomic # 7 Polarization: -58.45 SS G_CDS: -0.88 Total: -59.33 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.76 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.03 Total: 15.69 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.87 -9.91 -42.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713756655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.609 kcal (2) G-P(sol) polarization free energy of solvation -32.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds