Wall clock time and date at job start Tue Mar 31 2020 20:06:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47197 * 2 1 4 4 C 1.50707 * 109.47321 * 120.00296 * 2 1 3 5 5 N 1.30502 * 125.64945 * 300.04176 * 4 2 1 6 6 C 1.34122 * 109.25561 * 179.97438 * 5 4 2 7 7 C 1.34670 * 108.02077 * 359.73056 * 6 5 4 8 8 N 1.35038 * 125.65063 * 119.99245 * 4 2 1 9 9 C 1.46497 * 126.39963 * 0.04830 * 8 4 2 10 10 C 1.50700 * 109.47483 * 84.99028 * 9 8 4 11 11 O 1.21279 * 119.99951 * 0.02562 * 10 9 8 12 12 N 1.34778 * 120.00044 * 180.02562 * 10 9 8 13 13 C 1.47293 * 125.79131 * 0.02562 * 12 10 9 14 14 C 1.54330 * 107.30296 * 178.92371 * 13 12 10 15 15 C 1.55155 * 102.94392 * 337.81732 * 14 13 12 16 16 H 1.09003 * 111.03529 * 277.41726 * 15 14 13 17 17 C 1.52994 * 111.00403 * 153.57895 * 15 14 13 18 18 N 1.46490 * 109.47472 * 72.80320 * 17 15 14 19 19 C 1.46501 * 120.00131 * 89.99868 * 18 17 15 20 20 C 1.36939 * 120.00270 * 270.00025 * 18 17 15 21 21 H 1.08010 * 119.99891 * 22.84182 * 20 18 17 22 22 C 1.38812 * 120.00710 * 202.84511 * 20 18 17 23 23 N 1.31623 * 119.99462 * 13.23670 * 22 20 18 24 24 Si 1.86793 * 120.00264 * 193.23921 * 22 20 18 25 25 H 1.48497 * 109.47397 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47111 * 119.99944 * 24 22 20 27 27 H 1.48502 * 109.47242 * 239.99894 * 24 22 20 28 28 C 1.47422 * 125.64760 * 180.02562 * 12 10 9 29 29 H 1.08998 * 109.46725 * 299.99534 * 1 2 3 30 30 H 1.08991 * 109.47196 * 59.99505 * 1 2 3 31 31 H 1.09005 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.47105 * 240.00143 * 2 1 3 33 33 H 1.09002 * 109.46976 * 60.00064 * 3 2 1 34 34 H 1.08998 * 109.47198 * 180.02562 * 3 2 1 35 35 H 1.08991 * 109.47451 * 300.00338 * 3 2 1 36 36 H 1.08005 * 125.98806 * 179.97438 * 6 5 4 37 37 H 1.07997 * 126.58910 * 180.27877 * 7 6 5 38 38 H 1.09008 * 109.47000 * 324.99047 * 9 8 4 39 39 H 1.08999 * 109.47399 * 204.99723 * 9 8 4 40 40 H 1.09000 * 109.85778 * 59.50022 * 13 12 10 41 41 H 1.08999 * 110.00088 * 298.43067 * 13 12 10 42 42 H 1.08997 * 110.71628 * 219.45137 * 14 13 12 43 43 H 1.09000 * 110.86865 * 96.25135 * 14 13 12 44 44 H 1.09007 * 109.46852 * 192.80710 * 17 15 14 45 45 H 1.09000 * 109.46901 * 312.79623 * 17 15 14 46 46 H 1.09002 * 109.47088 * 95.13027 * 19 18 17 47 47 H 1.09011 * 109.47168 * 215.12780 * 19 18 17 48 48 H 1.08998 * 109.47303 * 335.12997 * 19 18 17 49 49 H 0.97000 * 119.99829 * 180.02562 * 23 22 20 50 50 H 1.09001 * 110.37059 * 85.26648 * 28 12 10 51 51 H 1.08995 * 110.37147 * 323.04655 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7855 -0.3626 2.4638 6 6 2.3926 -1.2217 3.2957 7 6 3.0355 -2.1402 2.5497 8 7 2.8120 -1.8131 1.2395 9 6 3.3191 -2.5289 0.0662 10 6 4.5914 -1.8761 -0.4094 11 8 5.0315 -0.9086 0.1745 12 7 5.2402 -2.3676 -1.4837 13 6 4.8218 -3.5304 -2.2851 14 6 5.8527 -3.6998 -3.4211 15 6 6.4809 -2.2856 -3.5340 16 1 5.8587 -1.6285 -4.1417 17 6 7.9032 -2.3605 -4.0926 18 7 7.8506 -2.6774 -5.5219 19 6 7.7822 -1.5976 -6.5096 20 6 7.8653 -3.9830 -5.9347 21 1 7.5496 -4.7660 -5.2611 22 6 8.2861 -4.3003 -7.2189 23 7 8.9111 -3.4000 -7.9478 24 14 7.9653 -6.0047 -7.9126 25 1 7.2519 -6.8247 -6.9007 26 1 7.1316 -5.8922 -9.1363 27 1 9.2578 -6.6524 -8.2519 28 6 6.4890 -1.8298 -2.0535 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9562 0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 2.3668 -1.1857 4.3749 37 1 3.6175 -2.9734 2.9150 38 1 2.5745 -2.4960 -0.7293 39 1 3.5206 -3.5664 0.3325 40 1 3.8321 -3.3533 -2.7060 41 1 4.8052 -4.4254 -1.6631 42 1 5.3584 -3.9778 -4.3520 43 1 6.6089 -4.4374 -3.1524 44 1 8.4000 -1.4005 -3.9513 45 1 8.4591 -3.1378 -3.5682 46 1 8.7862 -1.3666 -6.8656 47 1 7.1623 -1.9121 -7.3494 48 1 7.3471 -0.7108 -6.0489 49 1 9.2048 -3.6215 -8.8454 50 1 7.3526 -2.2445 -1.5337 51 1 6.4964 -0.7416 -1.9917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713756655.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:06:15 Heat of formation + Delta-G solvation = 30.497644 kcal Electronic energy + Delta-G solvation = -29406.606251 eV Core-core repulsion = 25535.026750 eV Total energy + Delta-G solvation = -3871.579500 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.17399 -41.05985 -38.95804 -37.09042 -36.29918 -35.04540 -33.90492 -32.24928 -30.39626 -29.86034 -29.03665 -28.06875 -27.89023 -26.77914 -24.30595 -23.77199 -23.12183 -22.27697 -21.10210 -20.88124 -19.79668 -18.74651 -18.51762 -18.15595 -17.34266 -16.83389 -16.53336 -16.10796 -15.81841 -15.45034 -15.26547 -15.12361 -15.10987 -14.63516 -14.58854 -14.44951 -14.27296 -13.91089 -13.86133 -13.70931 -13.42154 -13.23133 -13.03288 -13.00647 -12.78805 -12.64057 -12.42705 -12.34610 -12.15629 -12.14651 -11.93398 -11.92484 -11.77012 -11.54995 -11.46476 -11.36063 -10.93503 -10.60361 -10.49113 -9.74316 -9.28098 -8.72290 -7.76514 -5.25038 0.95732 1.39130 1.49690 1.51652 1.60770 1.62171 2.06984 2.20874 2.55456 3.26643 3.37465 3.39507 3.59204 3.66583 3.72994 3.75843 3.96350 4.01535 4.10922 4.15509 4.18117 4.32949 4.35173 4.43867 4.58433 4.61927 4.65550 4.71837 4.77415 4.84911 4.86255 4.87768 4.88863 4.93288 5.02652 5.03635 5.12169 5.19570 5.25122 5.30846 5.33285 5.40466 5.42375 5.52124 5.70591 5.75943 5.85739 6.15659 6.37820 6.42138 6.94542 7.16228 7.20417 7.92555 8.38006 9.27524 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020971 B = 0.002323 C = 0.002283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1334.863357 B =12049.905676 C =12263.692110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.010 4.010 3 C -0.133 4.133 4 C 0.213 3.787 5 N -0.521 5.521 6 C -0.054 4.054 7 C -0.051 4.051 8 N -0.446 5.446 9 C 0.091 3.909 10 C 0.508 3.492 11 O -0.575 6.575 12 N -0.609 5.609 13 C 0.098 3.902 14 C -0.111 4.111 15 C -0.105 4.105 16 H 0.068 0.932 17 C 0.160 3.840 18 N -0.615 5.615 19 C 0.176 3.824 20 C -0.243 4.243 21 H 0.084 0.916 22 C -0.062 4.062 23 N -0.945 5.945 24 Si 0.963 3.037 25 H -0.257 1.257 26 H -0.297 1.297 27 H -0.300 1.300 28 C 0.118 3.882 29 H 0.054 0.946 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.087 0.913 33 H 0.055 0.945 34 H 0.031 0.969 35 H 0.082 0.918 36 H 0.184 0.816 37 H 0.201 0.799 38 H 0.148 0.852 39 H 0.159 0.841 40 H 0.092 0.908 41 H 0.099 0.901 42 H 0.077 0.923 43 H 0.071 0.929 44 H 0.041 0.959 45 H 0.050 0.950 46 H 0.001 0.999 47 H 0.015 0.985 48 H 0.027 0.973 49 H 0.244 0.756 50 H 0.070 0.930 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.287 -0.589 16.698 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.030 4.030 3 C -0.191 4.191 4 C -0.049 4.049 5 N -0.240 5.240 6 C -0.201 4.201 7 C -0.183 4.183 8 N -0.128 5.128 9 C -0.035 4.035 10 C 0.296 3.704 11 O -0.455 6.455 12 N -0.343 5.343 13 C -0.023 4.023 14 C -0.149 4.149 15 C -0.127 4.127 16 H 0.086 0.914 17 C 0.034 3.966 18 N -0.338 5.338 19 C 0.031 3.969 20 C -0.374 4.374 21 H 0.102 0.898 22 C -0.256 4.256 23 N -0.593 5.593 24 Si 0.792 3.208 25 H -0.181 1.181 26 H -0.225 1.225 27 H -0.228 1.228 28 C -0.005 4.005 29 H 0.073 0.927 30 H 0.101 0.899 31 H 0.078 0.922 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.050 0.950 35 H 0.101 0.899 36 H 0.201 0.799 37 H 0.218 0.782 38 H 0.165 0.835 39 H 0.176 0.824 40 H 0.110 0.890 41 H 0.117 0.883 42 H 0.096 0.904 43 H 0.090 0.910 44 H 0.059 0.941 45 H 0.068 0.932 46 H 0.019 0.981 47 H 0.034 0.966 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.088 0.912 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -16.456 0.504 17.076 23.720 hybrid contribution 1.200 -1.201 -0.993 1.967 sum -15.256 -0.697 16.083 22.179 Atomic orbital electron populations 1.21728 0.91631 1.02534 1.03025 1.19656 0.97561 0.95448 0.90384 1.21691 0.99791 0.94765 1.02883 1.23530 0.96679 0.88846 0.95885 1.70122 1.25855 1.28039 1.00003 1.22653 1.02217 0.94720 1.00495 1.23132 1.07452 1.05279 0.82393 1.45045 1.38023 1.23096 1.06675 1.21919 0.94348 0.98311 0.88923 1.20867 0.86195 0.83888 0.79440 1.90777 1.68831 1.28860 1.57019 1.48646 1.25439 1.31773 1.28393 1.22441 0.99268 0.87890 0.92713 1.22512 0.97977 0.96432 0.98014 1.22839 0.99301 0.97395 0.93124 0.91400 1.20754 0.93384 0.98574 0.83934 1.44109 1.85822 1.02895 1.00948 1.20517 0.97399 0.88126 0.90888 1.19621 1.35156 0.84963 0.97630 0.89808 1.25814 0.99476 1.00773 0.99551 1.70259 1.43091 1.35451 1.10499 0.85253 0.76756 0.80506 0.78276 1.18063 1.22464 1.22821 1.22149 0.86451 0.98657 0.93287 0.92687 0.89937 0.92173 0.89499 0.92550 0.94964 0.89923 0.79921 0.78196 0.83484 0.82359 0.88956 0.88270 0.90432 0.91019 0.94057 0.93157 0.98107 0.96582 0.95459 0.94675 0.91197 0.92102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.98 9.18 71.98 0.66 -1.32 16 2 C -0.01 -0.20 3.25 -11.54 -0.04 -0.23 16 3 C -0.13 -2.82 9.17 71.98 0.66 -2.16 16 4 C 0.21 5.07 6.40 138.13 0.88 5.96 16 5 N -0.52 -14.24 11.25 -188.13 -2.12 -16.36 16 6 C -0.05 -1.25 11.87 83.52 0.99 -0.26 16 7 C -0.05 -0.98 11.58 83.09 0.96 -0.02 16 8 N -0.45 -9.02 2.24 -518.34 -1.16 -10.18 16 9 C 0.09 1.24 5.38 85.63 0.46 1.70 16 10 C 0.51 11.34 7.92 87.66 0.69 12.04 16 11 O -0.58 -18.82 16.68 -3.03 -0.05 -18.87 16 12 N -0.61 -12.65 3.34 -811.09 -2.71 -15.36 16 13 C 0.10 1.50 6.51 86.68 0.56 2.07 16 14 C -0.11 -2.64 5.29 31.78 0.17 -2.47 16 15 C -0.10 -2.94 3.26 -9.40 -0.03 -2.97 16 16 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 17 C 0.16 5.72 5.17 86.38 0.45 6.17 16 18 N -0.61 -28.19 2.91 -726.93 -2.11 -30.31 16 19 C 0.18 8.34 8.98 127.77 1.15 9.49 16 20 C -0.24 -12.06 9.16 84.03 0.77 -11.29 16 21 H 0.08 3.85 7.09 -2.91 -0.02 3.83 16 22 C -0.06 -3.29 5.10 84.86 0.43 -2.86 16 23 N -0.95 -54.57 10.71 21.65 0.23 -54.33 16 24 Si 0.96 42.52 29.57 68.60 2.03 44.55 16 25 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 26 H -0.30 -13.36 7.11 99.48 0.71 -12.65 16 27 H -0.30 -13.63 7.11 99.48 0.71 -12.93 16 28 C 0.12 2.99 6.37 86.86 0.55 3.54 16 29 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.09 1.42 6.85 -2.39 -0.02 1.40 16 33 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.03 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 36 H 0.18 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.20 2.45 8.06 -2.91 -0.02 2.42 16 38 H 0.15 1.23 7.28 -2.38 -0.02 1.21 16 39 H 0.16 1.03 8.13 -2.39 -0.02 1.01 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.07 1.78 7.75 -2.39 -0.02 1.77 16 44 H 0.04 1.44 8.07 -2.38 -0.02 1.42 16 45 H 0.05 1.79 7.87 -2.39 -0.02 1.77 16 46 H 0.00 0.03 7.34 -2.39 -0.02 0.02 16 47 H 0.02 0.80 7.34 -2.38 -0.02 0.79 16 48 H 0.03 1.09 8.03 -2.39 -0.02 1.08 16 49 H 0.24 13.82 8.31 -92.71 -0.77 13.05 16 50 H 0.07 1.76 8.04 -2.39 -0.02 1.74 16 51 H 0.06 1.71 8.03 -2.39 -0.02 1.69 16 Total: -1.00 -74.39 410.26 4.32 -70.06 By element: Atomic # 1 Polarization: 12.54 SS G_CDS: 0.89 Total: 13.42 kcal Atomic # 6 Polarization: 8.05 SS G_CDS: 9.33 Total: 17.37 kcal Atomic # 7 Polarization: -118.67 SS G_CDS: -7.87 Total: -126.54 kcal Atomic # 8 Polarization: -18.82 SS G_CDS: -0.05 Total: -18.87 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -74.39 4.32 -70.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713756655.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.559 kcal (2) G-P(sol) polarization free energy of solvation -74.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds