Wall clock time and date at job start Tue Mar 31 2020 19:35:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47571 * 2 1 4 4 C 1.50706 * 109.47463 * 120.00286 * 2 1 3 5 5 C 1.35364 * 126.38162 * 324.68532 * 4 2 1 6 6 C 1.41495 * 105.50068 * 179.89742 * 5 4 2 7 7 C 1.47717 * 126.51589 * 180.17097 * 6 5 4 8 8 O 1.21569 * 120.00396 * 0.25717 * 7 6 5 9 9 N 1.34780 * 119.99548 * 180.25804 * 7 6 5 10 10 C 1.46505 * 119.99325 * 174.98898 * 9 7 6 11 11 C 1.52996 * 109.47330 * 304.29287 * 10 9 7 12 12 C 1.52991 * 109.47295 * 64.29555 * 10 9 7 13 13 N 1.46508 * 109.47185 * 59.99905 * 12 10 9 14 14 C 1.36936 * 119.99716 * 180.02562 * 13 12 10 15 15 H 1.08001 * 120.00582 * 359.97438 * 14 13 12 16 16 C 1.38818 * 119.99552 * 179.97438 * 14 13 12 17 17 N 1.31612 * 119.99961 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99815 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47093 * 89.99879 * 18 16 14 20 20 H 1.48498 * 109.46543 * 209.99800 * 18 16 14 21 21 H 1.48502 * 109.47020 * 329.99817 * 18 16 14 22 22 C 1.53004 * 109.46609 * 184.29672 * 10 9 7 23 23 C 1.53001 * 117.49684 * 132.75075 * 22 10 9 24 24 C 1.53000 * 117.50217 * 64.08933 * 22 10 9 25 25 N 1.31807 * 106.96620 * 0.37023 * 6 5 4 26 26 N 1.28464 * 110.07241 * 359.76510 * 25 6 5 27 27 C 1.46502 * 124.88821 * 180.02562 * 26 25 6 28 28 H 1.08994 * 109.47093 * 59.99346 * 1 2 3 29 29 H 1.09006 * 109.46595 * 300.00310 * 1 2 3 30 30 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.47369 * 240.00192 * 2 1 3 32 32 H 1.08998 * 109.47007 * 59.99717 * 3 2 1 33 33 H 1.09001 * 109.47107 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.46774 * 300.00426 * 3 2 1 35 35 H 1.08003 * 127.24510 * 0.02562 * 5 4 2 36 36 H 0.96991 * 120.00178 * 354.98883 * 9 7 6 37 37 H 1.09005 * 109.47322 * 59.99904 * 11 10 9 38 38 H 1.08998 * 109.47259 * 180.02562 * 11 10 9 39 39 H 1.09000 * 109.47195 * 300.00383 * 11 10 9 40 40 H 1.09007 * 109.47411 * 179.97438 * 12 10 9 41 41 H 1.09000 * 109.47340 * 299.99740 * 12 10 9 42 42 H 0.96995 * 119.99972 * 0.02562 * 13 12 10 43 43 H 0.97005 * 120.00208 * 180.02562 * 17 16 14 44 44 H 1.08999 * 115.54967 * 278.41495 * 22 10 9 45 45 H 1.08993 * 117.49985 * 359.97438 * 23 22 10 46 46 H 1.09008 * 117.49672 * 145.01848 * 23 22 10 47 47 H 1.08993 * 117.49805 * 214.97725 * 24 22 10 48 48 H 1.08997 * 117.49599 * 359.97438 * 24 22 10 49 49 H 1.09002 * 109.47051 * 269.96453 * 27 26 25 50 50 H 1.09007 * 109.46581 * 29.95992 * 27 26 25 51 51 H 1.08991 * 109.47236 * 149.95985 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 1.4617 -0.6917 2.4578 6 6 2.2891 -1.5008 3.2719 7 6 2.0892 -1.8009 4.7044 8 8 1.1329 -1.3375 5.2949 9 7 2.9671 -2.5884 5.3568 10 6 2.8314 -2.7973 6.8005 11 6 2.8268 -1.4436 7.5135 12 6 1.5196 -3.5299 7.0887 13 7 1.5240 -4.8262 6.4060 14 6 0.4460 -5.6631 6.5189 15 1 -0.4073 -5.3679 7.1114 16 6 0.4500 -6.8911 5.8715 17 7 1.4896 -7.2508 5.1490 18 14 -1.0202 -8.0332 6.0261 19 1 -1.9889 -7.7429 4.9386 20 1 -0.5651 -9.4428 5.9204 21 1 -1.6751 -7.8217 7.3420 22 6 4.0062 -3.6365 7.3070 23 6 4.7294 -3.1524 8.5654 24 6 5.4066 -3.0299 7.1980 25 7 3.2745 -1.9322 2.5103 26 7 3.1389 -1.4797 1.3156 27 6 4.0531 -1.7585 0.2052 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.6768 1.9564 0.8899 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 0.5628 -0.1707 2.7527 36 1 3.6887 -3.0169 4.8705 37 1 1.9899 -0.8457 7.1526 38 1 2.7262 -1.5991 8.5876 39 1 3.7614 -0.9217 7.3082 40 1 1.4187 -3.6858 8.1628 41 1 0.6826 -2.9321 6.7278 42 1 2.2905 -5.0916 5.8741 43 1 1.4923 -8.1087 4.6963 44 1 3.9114 -4.7128 7.1636 45 1 4.3686 -2.2360 9.0321 46 1 5.1108 -3.9104 9.2497 47 1 6.2331 -3.7072 6.9833 48 1 5.4910 -2.0332 6.7651 49 1 4.8356 -1.0001 0.1797 50 1 4.5039 -2.7412 0.3438 51 1 3.4999 -1.7416 -0.7337 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714162476.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:36 Heat of formation + Delta-G solvation = 78.233009 kcal Electronic energy + Delta-G solvation = -30043.946608 eV Core-core repulsion = 26174.437069 eV Total energy + Delta-G solvation = -3869.509540 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.62169 -39.78843 -37.52930 -35.94995 -34.54449 -33.48830 -33.25044 -31.09196 -29.75791 -29.41591 -27.42761 -27.32665 -25.76151 -23.94661 -22.96521 -22.48309 -22.12764 -21.94460 -20.25227 -19.17890 -18.58725 -17.40267 -17.04759 -16.51008 -16.26405 -15.54974 -15.08241 -14.75706 -14.50639 -14.31049 -14.17781 -13.88448 -13.84574 -13.43357 -13.34879 -13.15000 -12.79175 -12.70910 -12.56128 -12.39726 -12.20938 -11.97628 -11.81930 -11.80187 -11.47149 -11.28043 -11.11456 -10.96557 -10.74444 -10.72586 -10.66694 -10.61756 -10.09098 -10.00382 -9.71402 -9.56315 -9.35259 -8.97522 -8.83118 -8.69126 -8.39664 -6.73050 -5.63599 -2.89203 1.82410 2.25734 2.48786 3.49368 3.52052 3.56559 3.58387 3.89303 4.18518 4.31722 4.38152 4.56872 4.71177 4.79434 4.89723 4.91021 5.00375 5.06644 5.20535 5.21406 5.29261 5.33631 5.39475 5.47729 5.54195 5.55260 5.60329 5.63137 5.71999 5.80331 5.82577 5.86377 5.93355 5.97191 6.07292 6.14792 6.17016 6.33463 6.36217 6.38821 6.55257 6.56084 6.70147 6.80003 6.83199 7.04390 7.25941 7.83776 7.93318 8.20688 8.55855 8.76848 9.67083 10.26824 10.62677 11.59678 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.009027 B = 0.003896 C = 0.003142 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3101.209958 B = 7184.866987 C = 8910.579459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.143 4.143 4 C 0.011 3.989 5 C -0.173 4.173 6 C -0.004 4.004 7 C 0.610 3.390 8 O -0.530 6.530 9 N -0.695 5.695 10 C 0.202 3.798 11 C -0.164 4.164 12 C 0.144 3.856 13 N -0.726 5.726 14 C -0.227 4.227 15 H 0.069 0.931 16 C -0.017 4.017 17 N -0.936 5.936 18 Si 0.904 3.096 19 H -0.292 1.292 20 H -0.293 1.293 21 H -0.283 1.283 22 C -0.149 4.149 23 C -0.173 4.173 24 C -0.182 4.182 25 N -0.260 5.260 26 N -0.284 5.284 27 C 0.086 3.914 28 H 0.062 0.938 29 H 0.064 0.936 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.158 0.842 36 H 0.403 0.597 37 H 0.080 0.920 38 H 0.066 0.934 39 H 0.051 0.949 40 H 0.024 0.976 41 H 0.045 0.955 42 H 0.382 0.618 43 H 0.252 0.748 44 H 0.122 0.878 45 H 0.099 0.901 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.091 0.909 49 H 0.081 0.919 50 H 0.097 0.903 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.395 17.475 -10.054 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.201 4.201 4 C -0.113 4.113 5 C -0.201 4.201 6 C -0.165 4.165 7 C 0.394 3.606 8 O -0.405 6.405 9 N -0.345 5.345 10 C 0.116 3.884 11 C -0.223 4.223 12 C 0.016 3.984 13 N -0.370 5.370 14 C -0.359 4.359 15 H 0.087 0.913 16 C -0.212 4.212 17 N -0.586 5.586 18 Si 0.736 3.264 19 H -0.220 1.220 20 H -0.220 1.220 21 H -0.208 1.208 22 C -0.167 4.167 23 C -0.210 4.210 24 C -0.219 4.219 25 N -0.095 5.095 26 N -0.072 5.072 27 C -0.054 4.054 28 H 0.081 0.919 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.176 0.824 36 H 0.238 0.762 37 H 0.099 0.901 38 H 0.085 0.915 39 H 0.070 0.930 40 H 0.041 0.959 41 H 0.063 0.937 42 H 0.216 0.784 43 H 0.062 0.938 44 H 0.140 0.860 45 H 0.117 0.883 46 H 0.111 0.889 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.100 0.900 50 H 0.116 0.884 51 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 8.616 17.054 -9.614 21.390 hybrid contribution -0.804 -0.796 -0.542 1.255 sum 7.812 16.258 -10.157 20.701 Atomic orbital electron populations 1.21832 0.93050 1.02827 1.02486 1.19641 0.96805 0.95247 0.92503 1.21843 1.00905 0.94732 1.02570 1.21290 0.91336 1.00668 0.98014 1.21420 1.02853 1.04737 0.91106 1.22026 0.95663 1.03177 0.95597 1.16727 0.82072 0.78566 0.83194 1.90709 1.29379 1.53553 1.66885 1.45744 1.31362 1.48678 1.08729 1.20045 0.95205 0.94103 0.79008 1.22290 1.02705 0.96881 1.00387 1.21076 0.93881 0.87839 0.95614 1.42247 1.20356 1.15044 1.59334 1.19254 0.95783 0.96508 1.24323 0.91348 1.24668 0.97786 0.98109 1.00668 1.69658 1.29606 1.22299 1.37043 0.86219 0.82326 0.80333 0.77566 1.21964 1.21964 1.20831 1.22553 0.91244 1.00887 1.02044 1.23058 1.03880 1.03241 0.90812 1.22934 0.95917 1.02203 1.00853 1.73557 1.24199 1.20316 0.91405 1.45237 1.19354 1.34758 1.07822 1.22107 0.92866 1.04243 0.86217 0.91928 0.91672 0.91981 0.90367 0.91828 0.92836 0.91862 0.82402 0.76176 0.90094 0.91528 0.92994 0.95855 0.93677 0.78398 0.93844 0.86001 0.88278 0.88937 0.89011 0.89050 0.89999 0.88389 0.88986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.20 8.79 37.16 0.33 -0.87 16 2 C -0.02 -0.18 3.10 -91.77 -0.28 -0.47 16 3 C -0.14 -1.00 9.18 37.16 0.34 -0.66 16 4 C 0.01 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -2.65 9.96 -39.37 -0.39 -3.04 16 6 C 0.00 -0.07 7.13 -82.77 -0.59 -0.66 16 7 C 0.61 11.98 7.23 -12.39 -0.09 11.89 16 8 O -0.53 -11.53 13.16 5.30 0.07 -11.46 16 9 N -0.70 -12.73 4.72 -48.58 -0.23 -12.96 16 10 C 0.20 3.64 0.54 -131.82 -0.07 3.57 16 11 C -0.16 -2.59 6.98 37.16 0.26 -2.34 16 12 C 0.14 3.26 5.03 -4.04 -0.02 3.24 16 13 N -0.73 -19.35 5.04 -59.90 -0.30 -19.65 16 14 C -0.23 -6.73 9.99 -15.06 -0.15 -6.88 16 15 H 0.07 2.00 7.83 -52.49 -0.41 1.59 16 16 C -0.02 -0.52 5.50 -17.43 -0.10 -0.61 16 17 N -0.94 -29.17 13.06 55.49 0.72 -28.45 16 18 Si 0.90 23.50 29.55 -169.99 -5.02 18.48 16 19 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 20 H -0.29 -7.61 7.11 56.52 0.40 -7.21 16 21 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 22 C -0.15 -2.45 4.84 -90.62 -0.44 -2.89 16 23 C -0.17 -2.32 9.64 -26.69 -0.26 -2.58 16 24 C -0.18 -2.41 9.82 -26.69 -0.26 -2.67 16 25 N -0.26 -4.18 11.68 33.42 0.39 -3.79 16 26 N -0.28 -3.61 3.70 -63.85 -0.24 -3.84 16 27 C 0.09 0.66 11.11 59.85 0.66 1.32 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.57 7.36 -51.93 -0.38 0.18 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.08 0.53 6.86 -51.93 -0.36 0.17 16 32 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.16 2.29 7.48 -52.48 -0.39 1.89 16 36 H 0.40 7.11 8.21 -40.82 -0.34 6.78 16 37 H 0.08 1.42 6.03 -51.93 -0.31 1.11 16 38 H 0.07 0.95 6.78 -51.93 -0.35 0.60 16 39 H 0.05 0.73 6.99 -51.93 -0.36 0.37 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.05 1.13 6.32 -51.93 -0.33 0.80 16 42 H 0.38 10.53 6.62 -40.82 -0.27 10.26 16 43 H 0.25 7.61 8.31 -40.82 -0.34 7.27 16 44 H 0.12 2.38 7.08 -51.93 -0.37 2.01 16 45 H 0.10 1.23 5.88 -51.93 -0.31 0.93 16 46 H 0.09 1.17 8.14 -51.92 -0.42 0.75 16 47 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.09 1.16 7.35 -51.93 -0.38 0.78 16 49 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 51 H 0.09 0.47 6.88 -51.93 -0.36 0.12 16 LS Contribution 404.28 15.07 6.09 6.09 Total: -1.00 -35.55 404.28 -8.33 -43.88 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: -8.28 Total: 15.68 kcal Atomic # 6 Polarization: -2.44 SS G_CDS: -1.54 Total: -3.98 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: 0.35 Total: -68.69 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.07 Total: -11.46 kcal Atomic # 14 Polarization: 23.50 SS G_CDS: -5.02 Total: 18.48 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.55 -8.33 -43.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714162476.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.118 kcal (2) G-P(sol) polarization free energy of solvation -35.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.332 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.885 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds