Wall clock time and date at job start Tue Mar 31 2020 19:35:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 C 1.50702 * 109.46785 * 120.00058 * 2 1 3 5 5 C 1.39675 * 126.06572 * 274.71503 * 4 2 1 6 6 C 1.38410 * 105.35899 * 180.26672 * 5 4 2 7 7 C 1.47155 * 126.88314 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00271 * 5.18690 * 7 6 5 9 9 N 1.34775 * 119.99924 * 185.19245 * 7 6 5 10 10 C 1.46499 * 120.00207 * 185.06126 * 9 7 6 11 11 C 1.53005 * 109.46926 * 296.62886 * 10 9 7 12 12 C 1.52994 * 109.47215 * 56.62840 * 10 9 7 13 13 N 1.46500 * 109.47405 * 60.00167 * 12 10 9 14 14 C 1.36931 * 120.00480 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00177 * 179.97438 * 14 13 12 17 17 N 1.31610 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99822 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46958 * 89.99978 * 18 16 14 20 20 H 1.48499 * 109.46819 * 209.99872 * 18 16 14 21 21 H 1.48503 * 109.47102 * 329.99827 * 18 16 14 22 22 C 1.53002 * 109.47206 * 176.62887 * 10 9 7 23 23 C 1.53003 * 117.49714 * 132.40316 * 22 10 9 24 24 C 1.53003 * 117.50020 * 63.74218 * 22 10 9 25 25 N 1.36600 * 106.23085 * 359.97438 * 6 5 4 26 26 C 1.46493 * 125.19148 * 180.02562 * 25 6 5 27 27 N 1.28451 * 109.62030 * 0.02562 * 25 6 5 28 28 H 1.08996 * 109.47252 * 300.00477 * 1 2 3 29 29 H 1.08999 * 109.46999 * 59.99946 * 1 2 3 30 30 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47252 * 239.99523 * 2 1 3 32 32 H 1.09004 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47321 * 299.99398 * 3 2 1 34 34 H 1.08996 * 109.47417 * 59.99624 * 3 2 1 35 35 H 1.08000 * 127.32047 * 0.25871 * 5 4 2 36 36 H 0.96999 * 120.00254 * 5.06006 * 9 7 6 37 37 H 1.08995 * 109.46929 * 60.00165 * 11 10 9 38 38 H 1.09007 * 109.46632 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47121 * 299.99765 * 11 10 9 40 40 H 1.09007 * 109.47212 * 180.02562 * 12 10 9 41 41 H 1.09003 * 109.47229 * 299.99950 * 12 10 9 42 42 H 0.97003 * 119.99492 * 359.97438 * 13 12 10 43 43 H 0.96998 * 120.00625 * 180.02562 * 17 16 14 44 44 H 1.09003 * 115.54866 * 278.07041 * 22 10 9 45 45 H 1.08998 * 117.50032 * 359.97438 * 23 22 10 46 46 H 1.09002 * 117.49946 * 145.02629 * 23 22 10 47 47 H 1.08992 * 117.49818 * 214.98095 * 24 22 10 48 48 H 1.09000 * 117.49680 * 359.97438 * 24 22 10 49 49 H 1.08998 * 109.47361 * 276.85420 * 26 25 6 50 50 H 1.09002 * 109.47029 * 36.84797 * 26 25 6 51 51 H 1.08995 * 109.47448 * 156.85235 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2188 -0.1391 2.4913 6 6 2.6941 -1.1636 3.2914 7 6 3.0489 -1.0789 4.7170 8 8 2.8456 -0.0507 5.3343 9 7 3.5991 -2.1405 5.3388 10 6 3.8501 -2.0956 6.7814 11 6 4.8727 -0.9993 7.0872 12 6 2.5432 -1.7935 7.5172 13 7 1.5640 -2.8431 7.2245 14 6 0.3120 -2.7847 7.7759 15 1 0.0464 -1.9650 8.4271 16 6 -0.6159 -3.7790 7.4981 17 7 -0.2926 -4.7776 6.7042 18 14 -2.3237 -3.6995 8.2510 19 1 -3.2291 -2.9471 7.3460 20 1 -2.8456 -5.0768 8.4403 21 1 -2.2537 -3.0116 9.5652 22 6 4.3966 -3.4469 7.2464 23 6 5.6340 -3.4367 8.1462 24 6 5.7505 -3.8911 6.6890 25 7 2.7667 -2.2694 2.4928 26 6 3.2207 -3.5939 2.9238 27 7 2.3761 -1.9708 1.3061 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.0321 0.8846 2.7804 36 1 3.8290 -2.9344 4.8311 37 1 4.4834 -0.0367 6.7560 38 1 5.0598 -0.9662 8.1606 39 1 5.8038 -1.2145 6.5630 40 1 2.7300 -1.7596 8.5907 41 1 2.1538 -0.8308 7.1860 42 1 1.8024 -3.5791 6.6393 43 1 -0.9410 -5.4722 6.5097 44 1 3.6490 -4.2192 7.4275 45 1 6.0590 -2.4673 8.4065 46 1 5.7008 -4.2026 8.9189 47 1 5.8937 -4.9555 6.5038 48 1 6.2517 -3.2207 5.9908 49 1 4.3094 -3.6334 2.8907 50 1 2.8812 -3.7805 3.9427 51 1 2.8092 -4.3532 2.2590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714174489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:52 Heat of formation + Delta-G solvation = 84.538071 kcal Electronic energy + Delta-G solvation = -30565.660018 eV Core-core repulsion = 26696.423886 eV Total energy + Delta-G solvation = -3869.236132 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.45164 -40.01066 -37.71420 -36.02346 -34.73278 -33.74550 -32.40937 -31.44625 -30.48247 -29.42943 -27.20883 -26.85510 -25.92347 -24.17153 -22.88747 -22.43685 -22.23919 -22.11293 -20.42253 -19.29732 -18.86539 -17.53675 -17.19163 -16.21497 -16.19395 -15.52132 -15.32926 -14.86615 -14.52313 -14.36691 -14.22138 -13.96170 -13.92495 -13.45920 -13.28260 -13.19451 -12.70811 -12.66623 -12.51805 -12.32784 -12.12490 -12.05075 -11.93207 -11.47047 -11.42484 -11.20331 -11.17465 -11.10938 -10.90335 -10.81025 -10.78274 -10.44338 -10.24935 -10.10735 -9.89252 -9.69429 -9.52884 -8.95072 -8.79842 -8.76720 -8.64790 -6.86746 -5.76267 -3.01997 1.49746 2.52560 2.70197 3.18442 3.45105 3.50659 3.51612 3.57082 4.00571 4.35251 4.60833 4.67225 4.79141 4.81079 4.93134 4.97956 5.01171 5.11237 5.15319 5.28516 5.36806 5.39589 5.40139 5.48043 5.60329 5.61245 5.61979 5.69634 5.73520 5.74818 5.84056 5.91011 5.93024 5.98772 6.05218 6.15182 6.18696 6.21918 6.25138 6.31125 6.39664 6.47859 6.63527 6.65537 6.81014 6.87816 7.05182 7.72206 7.74660 8.17021 8.43507 8.45915 9.55277 10.11829 10.47705 11.47238 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008449 B = 0.004557 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.169747 B = 6142.890597 C = 8143.183768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.006 4.006 3 C -0.143 4.143 4 C 0.026 3.974 5 C -0.156 4.156 6 C -0.029 4.029 7 C 0.599 3.401 8 O -0.516 6.516 9 N -0.714 5.714 10 C 0.201 3.799 11 C -0.163 4.163 12 C 0.142 3.858 13 N -0.726 5.726 14 C -0.229 4.229 15 H 0.069 0.931 16 C -0.015 4.015 17 N -0.938 5.938 18 Si 0.905 3.095 19 H -0.291 1.291 20 H -0.292 1.292 21 H -0.282 1.282 22 C -0.152 4.152 23 C -0.169 4.169 24 C -0.187 4.187 25 N -0.274 5.274 26 C 0.072 3.928 27 N -0.277 5.277 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.081 0.919 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.160 0.840 36 H 0.393 0.607 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.027 0.973 41 H 0.048 0.952 42 H 0.380 0.620 43 H 0.253 0.747 44 H 0.124 0.876 45 H 0.100 0.900 46 H 0.094 0.906 47 H 0.094 0.906 48 H 0.091 0.909 49 H 0.086 0.914 50 H 0.105 0.895 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.836 5.165 -10.134 17.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.026 4.026 3 C -0.201 4.201 4 C -0.131 4.131 5 C -0.185 4.185 6 C -0.156 4.156 7 C 0.384 3.616 8 O -0.390 6.390 9 N -0.369 5.369 10 C 0.115 3.885 11 C -0.222 4.222 12 C 0.014 3.986 13 N -0.370 5.370 14 C -0.361 4.361 15 H 0.087 0.913 16 C -0.210 4.210 17 N -0.587 5.587 18 Si 0.736 3.264 19 H -0.219 1.219 20 H -0.219 1.219 21 H -0.208 1.208 22 C -0.171 4.171 23 C -0.206 4.206 24 C -0.224 4.224 25 N -0.063 5.063 26 C -0.069 4.069 27 N -0.110 5.110 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.099 0.901 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.177 0.823 36 H 0.232 0.768 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.045 0.955 41 H 0.066 0.934 42 H 0.213 0.787 43 H 0.063 0.937 44 H 0.141 0.859 45 H 0.119 0.881 46 H 0.113 0.887 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.104 0.896 50 H 0.123 0.877 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 12.690 4.817 -10.083 16.909 hybrid contribution -0.970 -0.265 0.548 1.145 sum 11.720 4.552 -9.535 15.780 Atomic orbital electron populations 1.21826 0.93990 1.02313 1.01999 1.19372 0.95637 0.94798 0.92831 1.21825 1.01199 0.94897 1.02197 1.21885 1.04719 0.90162 0.96308 1.21903 1.04753 0.99869 0.91991 1.21847 1.11308 0.88778 0.93654 1.16794 0.77185 0.83908 0.83666 1.90755 1.53507 1.29874 1.64909 1.46358 1.63609 1.17470 1.09453 1.20098 0.96152 0.93147 0.79060 1.22296 0.97897 1.00216 1.01743 1.21092 0.87376 0.94191 0.95981 1.42217 1.10642 1.25990 1.58150 1.19237 0.89037 1.05869 1.21937 0.91282 1.24655 0.98314 0.97504 1.00552 1.69621 1.34751 1.13421 1.40954 0.86208 0.84840 0.76576 0.78736 1.21854 1.21875 1.20777 1.22596 0.91292 0.98686 1.04517 1.23057 1.01097 1.03184 0.93276 1.22986 1.00723 1.01464 0.97233 1.45538 1.45771 1.09262 1.05730 1.22433 1.00917 0.80336 1.03226 1.73007 1.17017 1.17683 1.03314 0.92180 0.92207 0.92449 0.90054 0.92508 0.92123 0.92016 0.82273 0.76806 0.90290 0.91396 0.92926 0.95522 0.93383 0.78654 0.93730 0.85854 0.88140 0.88748 0.88795 0.89058 0.89556 0.87692 0.87498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.18 37.16 0.34 -1.22 16 2 C -0.01 -0.07 3.38 -91.77 -0.31 -0.38 16 3 C -0.14 -1.34 8.78 37.15 0.33 -1.01 16 4 C 0.03 0.39 6.13 -82.47 -0.51 -0.12 16 5 C -0.16 -2.50 9.99 -38.98 -0.39 -2.88 16 6 C -0.03 -0.49 6.96 -82.06 -0.57 -1.06 16 7 C 0.60 10.86 7.20 -12.64 -0.09 10.77 16 8 O -0.52 -10.64 13.15 5.25 0.07 -10.57 16 9 N -0.71 -11.27 4.40 -48.75 -0.21 -11.48 16 10 C 0.20 3.24 0.54 -131.82 -0.07 3.17 16 11 C -0.16 -2.32 7.09 37.16 0.26 -2.05 16 12 C 0.14 2.98 4.91 -4.04 -0.02 2.96 16 13 N -0.73 -18.10 5.03 -59.91 -0.30 -18.40 16 14 C -0.23 -6.50 9.99 -15.06 -0.15 -6.65 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 17 N -0.94 -27.86 13.06 55.49 0.72 -27.14 16 18 Si 0.90 22.88 29.55 -169.99 -5.02 17.85 16 19 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 20 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 21 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 22 C -0.15 -2.19 4.86 -90.62 -0.44 -2.63 16 23 C -0.17 -1.99 9.63 -26.69 -0.26 -2.24 16 24 C -0.19 -2.06 9.71 -26.69 -0.26 -2.32 16 25 N -0.27 -4.21 3.75 -63.89 -0.24 -4.45 16 26 C 0.07 0.84 9.72 59.84 0.58 1.42 16 27 N -0.28 -4.38 11.90 33.64 0.40 -3.97 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.59 7.37 -51.93 -0.38 0.21 16 35 H 0.16 2.36 7.52 -52.49 -0.39 1.97 16 36 H 0.39 5.32 4.32 -40.82 -0.18 5.14 16 37 H 0.08 1.27 6.24 -51.93 -0.32 0.95 16 38 H 0.07 0.88 6.80 -51.93 -0.35 0.52 16 39 H 0.05 0.65 6.99 -51.93 -0.36 0.29 16 40 H 0.03 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.05 1.14 6.10 -51.93 -0.32 0.82 16 42 H 0.38 9.62 6.63 -40.82 -0.27 9.35 16 43 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 44 H 0.12 2.14 7.09 -51.93 -0.37 1.77 16 45 H 0.10 1.10 5.88 -51.93 -0.31 0.79 16 46 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.93 7.37 -51.93 -0.38 0.55 16 49 H 0.09 0.73 8.07 -51.93 -0.42 0.31 16 50 H 0.10 1.37 6.03 -51.93 -0.31 1.06 16 51 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 LS Contribution 399.70 15.07 6.02 6.02 Total: -1.00 -33.68 399.70 -8.35 -42.03 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -8.14 Total: 14.88 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.65 Total: -4.78 kcal Atomic # 7 Polarization: -65.81 SS G_CDS: 0.37 Total: -65.44 kcal Atomic # 8 Polarization: -10.64 SS G_CDS: 0.07 Total: -10.57 kcal Atomic # 14 Polarization: 22.88 SS G_CDS: -5.02 Total: 17.85 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.68 -8.35 -42.03 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714174489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.570 kcal (2) G-P(sol) polarization free energy of solvation -33.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds