Wall clock time and date at job start Tue Mar 31 2020 19:35:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.47179 * 2 1 4 4 C 1.50702 * 109.46785 * 120.00058 * 2 1 3 5 5 C 1.39675 * 126.06572 * 274.71503 * 4 2 1 6 6 C 1.38410 * 105.35899 * 180.26672 * 5 4 2 7 7 C 1.47155 * 126.88314 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00271 * 5.18690 * 7 6 5 9 9 N 1.34775 * 119.99924 * 185.19245 * 7 6 5 10 10 C 1.46499 * 120.00207 * 185.06126 * 9 7 6 11 11 C 1.53005 * 109.46926 * 296.62886 * 10 9 7 12 12 C 1.52994 * 109.47215 * 56.62840 * 10 9 7 13 13 N 1.46500 * 109.47405 * 60.00167 * 12 10 9 14 14 C 1.36931 * 120.00480 * 180.02562 * 13 12 10 15 15 H 1.08004 * 120.00080 * 359.97438 * 14 13 12 16 16 C 1.38811 * 120.00177 * 179.97438 * 14 13 12 17 17 N 1.31610 * 120.00115 * 359.97438 * 16 14 13 18 18 Si 1.86807 * 119.99822 * 179.97438 * 16 14 13 19 19 H 1.48499 * 109.46958 * 89.99978 * 18 16 14 20 20 H 1.48499 * 109.46819 * 209.99872 * 18 16 14 21 21 H 1.48503 * 109.47102 * 329.99827 * 18 16 14 22 22 C 1.53002 * 109.47206 * 176.62887 * 10 9 7 23 23 C 1.53003 * 117.49714 * 132.40316 * 22 10 9 24 24 C 1.53003 * 117.50020 * 63.74218 * 22 10 9 25 25 N 1.36600 * 106.23085 * 359.97438 * 6 5 4 26 26 C 1.46493 * 125.19148 * 180.02562 * 25 6 5 27 27 N 1.28451 * 109.62030 * 0.02562 * 25 6 5 28 28 H 1.08996 * 109.47252 * 300.00477 * 1 2 3 29 29 H 1.08999 * 109.46999 * 59.99946 * 1 2 3 30 30 H 1.08997 * 109.47383 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47252 * 239.99523 * 2 1 3 32 32 H 1.09004 * 109.47142 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47321 * 299.99398 * 3 2 1 34 34 H 1.08996 * 109.47417 * 59.99624 * 3 2 1 35 35 H 1.08000 * 127.32047 * 0.25871 * 5 4 2 36 36 H 0.96999 * 120.00254 * 5.06006 * 9 7 6 37 37 H 1.08995 * 109.46929 * 60.00165 * 11 10 9 38 38 H 1.09007 * 109.46632 * 180.02562 * 11 10 9 39 39 H 1.09001 * 109.47121 * 299.99765 * 11 10 9 40 40 H 1.09007 * 109.47212 * 180.02562 * 12 10 9 41 41 H 1.09003 * 109.47229 * 299.99950 * 12 10 9 42 42 H 0.97003 * 119.99492 * 359.97438 * 13 12 10 43 43 H 0.96998 * 120.00625 * 180.02562 * 17 16 14 44 44 H 1.09003 * 115.54866 * 278.07041 * 22 10 9 45 45 H 1.08998 * 117.50032 * 359.97438 * 23 22 10 46 46 H 1.09002 * 117.49946 * 145.02629 * 23 22 10 47 47 H 1.08992 * 117.49818 * 214.98095 * 24 22 10 48 48 H 1.09000 * 117.49680 * 359.97438 * 24 22 10 49 49 H 1.08998 * 109.47361 * 276.85420 * 26 25 6 50 50 H 1.09002 * 109.47029 * 36.84797 * 26 25 6 51 51 H 1.08995 * 109.47448 * 156.85235 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 2.2188 -0.1391 2.4913 6 6 2.6941 -1.1636 3.2914 7 6 3.0489 -1.0789 4.7170 8 8 2.8456 -0.0507 5.3343 9 7 3.5991 -2.1405 5.3388 10 6 3.8501 -2.0956 6.7814 11 6 4.8727 -0.9993 7.0872 12 6 2.5432 -1.7935 7.5172 13 7 1.5640 -2.8431 7.2245 14 6 0.3120 -2.7847 7.7759 15 1 0.0464 -1.9650 8.4271 16 6 -0.6159 -3.7790 7.4981 17 7 -0.2926 -4.7776 6.7042 18 14 -2.3237 -3.6995 8.2510 19 1 -3.2291 -2.9471 7.3460 20 1 -2.8456 -5.0768 8.4403 21 1 -2.2537 -3.0116 9.5652 22 6 4.3966 -3.4469 7.2464 23 6 5.6340 -3.4367 8.1462 24 6 5.7505 -3.8911 6.6890 25 7 2.7667 -2.2694 2.4928 26 6 3.2207 -3.5939 2.9238 27 7 2.3761 -1.9708 1.3061 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 2.0321 0.8846 2.7804 36 1 3.8290 -2.9344 4.8311 37 1 4.4834 -0.0367 6.7560 38 1 5.0598 -0.9662 8.1606 39 1 5.8038 -1.2145 6.5630 40 1 2.7300 -1.7596 8.5907 41 1 2.1538 -0.8308 7.1860 42 1 1.8024 -3.5791 6.6393 43 1 -0.9410 -5.4722 6.5097 44 1 3.6490 -4.2192 7.4275 45 1 6.0590 -2.4673 8.4065 46 1 5.7008 -4.2026 8.9189 47 1 5.8937 -4.9555 6.5038 48 1 6.2517 -3.2207 5.9908 49 1 4.3094 -3.6334 2.8907 50 1 2.8812 -3.7805 3.9427 51 1 2.8092 -4.3532 2.2590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714174489.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:50 Heat of formation + Delta-G solvation = 63.148812 kcal Electronic energy + Delta-G solvation = -30566.587525 eV Core-core repulsion = 26696.423886 eV Total energy + Delta-G solvation = -3870.163639 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.64343 -41.33896 -38.98149 -36.99622 -36.40186 -35.24777 -33.68936 -32.94204 -32.08778 -30.78657 -28.10948 -27.80860 -27.61317 -25.62648 -24.42433 -23.82725 -23.42467 -23.10549 -21.61995 -20.42967 -20.20955 -19.26508 -18.68056 -17.37951 -17.35166 -17.01827 -16.63499 -16.31662 -16.06252 -15.75330 -15.40944 -15.16842 -15.01518 -14.98755 -14.69520 -14.28120 -14.11649 -13.91778 -13.74696 -13.52999 -13.42422 -13.11963 -13.08795 -12.90524 -12.83520 -12.50922 -12.37836 -12.29529 -12.18111 -12.05844 -12.03288 -12.00644 -11.80130 -11.49864 -11.29444 -11.11061 -10.98121 -10.77474 -10.27809 -9.99498 -9.86900 -8.97144 -7.98559 -5.23821 0.20252 1.41196 1.41657 1.43489 1.51344 1.53353 1.92288 2.22246 2.52412 2.98062 3.26995 3.35098 3.50188 3.63298 3.83193 3.86693 3.91872 4.03178 4.12649 4.14802 4.22320 4.29162 4.31330 4.43504 4.45008 4.47420 4.55864 4.62196 4.71889 4.77071 4.85047 4.85766 4.86274 4.95798 5.01182 5.02271 5.06031 5.10952 5.17977 5.25697 5.32039 5.40749 5.42603 5.44406 5.46452 5.51559 5.54926 5.70973 6.24313 6.43758 6.96209 7.11587 7.32260 8.05778 8.34343 9.24398 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008449 B = 0.004557 C = 0.003438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3313.169747 B = 6142.890597 C = 8143.183768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 C -0.139 4.139 4 C 0.025 3.975 5 C -0.167 4.167 6 C -0.054 4.054 7 C 0.594 3.406 8 O -0.550 6.550 9 N -0.702 5.702 10 C 0.208 3.792 11 C -0.155 4.155 12 C 0.142 3.858 13 N -0.728 5.728 14 C -0.243 4.243 15 H 0.063 0.937 16 C -0.067 4.067 17 N -0.962 5.962 18 Si 0.965 3.035 19 H -0.294 1.294 20 H -0.290 1.290 21 H -0.272 1.272 22 C -0.179 4.179 23 C -0.159 4.159 24 C -0.158 4.158 25 N -0.273 5.273 26 C 0.062 3.938 27 N -0.288 5.288 28 H 0.047 0.953 29 H 0.087 0.913 30 H 0.041 0.959 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.084 0.916 34 H 0.055 0.945 35 H 0.162 0.838 36 H 0.404 0.596 37 H 0.056 0.944 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.025 0.975 41 H 0.020 0.980 42 H 0.376 0.624 43 H 0.251 0.749 44 H 0.089 0.911 45 H 0.113 0.887 46 H 0.101 0.899 47 H 0.109 0.891 48 H 0.107 0.893 49 H 0.124 0.876 50 H 0.088 0.912 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.380 4.958 -10.976 18.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.131 4.131 5 C -0.197 4.197 6 C -0.181 4.181 7 C 0.380 3.620 8 O -0.427 6.427 9 N -0.358 5.358 10 C 0.123 3.877 11 C -0.213 4.213 12 C 0.015 3.985 13 N -0.371 5.371 14 C -0.375 4.375 15 H 0.081 0.919 16 C -0.259 4.259 17 N -0.613 5.613 18 Si 0.794 3.206 19 H -0.221 1.221 20 H -0.216 1.216 21 H -0.197 1.197 22 C -0.198 4.198 23 C -0.197 4.197 24 C -0.195 4.195 25 N -0.062 5.062 26 C -0.077 4.077 27 N -0.122 5.122 28 H 0.067 0.933 29 H 0.106 0.894 30 H 0.060 0.940 31 H 0.110 0.890 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.074 0.926 35 H 0.180 0.820 36 H 0.246 0.754 37 H 0.075 0.925 38 H 0.100 0.900 39 H 0.097 0.903 40 H 0.043 0.957 41 H 0.038 0.962 42 H 0.210 0.790 43 H 0.059 0.941 44 H 0.108 0.892 45 H 0.131 0.869 46 H 0.119 0.881 47 H 0.127 0.873 48 H 0.125 0.875 49 H 0.142 0.858 50 H 0.107 0.893 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 14.266 4.591 -10.921 18.543 hybrid contribution -1.455 -0.199 0.814 1.679 sum 12.811 4.392 -10.106 16.899 Atomic orbital electron populations 1.21814 0.93717 1.01527 1.02802 1.19549 0.95773 0.95735 0.91597 1.21805 1.01162 0.93608 1.03088 1.22442 1.03821 0.89843 0.97013 1.22128 1.04790 1.00108 0.92646 1.21865 1.12755 0.90031 0.93499 1.17040 0.76936 0.83891 0.84137 1.90731 1.55038 1.31196 1.65774 1.46324 1.62727 1.17301 1.09415 1.19957 0.94028 0.95186 0.78563 1.22227 0.98018 0.98078 1.02969 1.21124 0.89121 0.91821 0.96453 1.42268 1.10448 1.26685 1.57738 1.19530 0.90579 1.05588 1.21779 0.91870 1.25366 1.01647 0.97465 1.01459 1.69748 1.35592 1.13876 1.42045 0.85268 0.80588 0.76487 0.78226 1.22114 1.21587 1.19729 1.22265 0.92211 0.96824 1.08468 1.23197 0.98313 1.04161 0.93984 1.23099 0.96718 1.02723 0.96981 1.45821 1.45257 1.09778 1.05330 1.22712 1.03332 0.79197 1.02442 1.73010 1.17427 1.18223 1.03494 0.93340 0.89440 0.93995 0.89000 0.92549 0.89737 0.92618 0.82003 0.75448 0.92504 0.89993 0.90262 0.95747 0.96177 0.79049 0.94061 0.89235 0.86851 0.88077 0.87291 0.87457 0.85824 0.89330 0.86193 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.93 9.18 71.98 0.66 -2.27 16 2 C -0.01 -0.14 3.38 -11.54 -0.04 -0.18 16 3 C -0.14 -2.38 8.78 71.98 0.63 -1.75 16 4 C 0.03 0.74 6.13 43.05 0.26 1.01 16 5 C -0.17 -5.46 9.99 22.66 0.23 -5.23 16 6 C -0.05 -1.87 6.96 40.79 0.28 -1.59 16 7 C 0.59 22.11 7.20 86.58 0.62 22.73 16 8 O -0.55 -23.68 13.15 -4.13 -0.05 -23.74 16 9 N -0.70 -22.24 4.40 -426.41 -1.88 -24.12 16 10 C 0.21 6.70 0.54 3.60 0.00 6.70 16 11 C -0.15 -4.21 7.09 71.98 0.51 -3.70 16 12 C 0.14 6.20 4.91 86.38 0.42 6.62 16 13 N -0.73 -37.54 5.03 -343.45 -1.73 -39.27 16 14 C -0.24 -14.10 9.99 84.03 0.84 -13.27 16 15 H 0.06 3.66 7.83 -2.91 -0.02 3.64 16 16 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 17 N -0.96 -58.07 13.06 21.65 0.28 -57.78 16 18 Si 0.96 47.58 29.55 68.60 2.03 49.61 16 19 H -0.29 -14.53 7.11 99.48 0.71 -13.82 16 20 H -0.29 -14.07 7.11 99.48 0.71 -13.37 16 21 H -0.27 -12.86 7.11 99.48 0.71 -12.16 16 22 C -0.18 -4.98 4.86 -10.79 -0.05 -5.03 16 23 C -0.16 -3.33 9.63 30.62 0.29 -3.03 16 24 C -0.16 -2.99 9.71 30.62 0.30 -2.70 16 25 N -0.27 -8.31 3.75 -356.05 -1.33 -9.64 16 26 C 0.06 1.41 9.72 127.77 1.24 2.65 16 27 N -0.29 -8.96 11.90 -47.49 -0.57 -9.53 16 28 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.05 1.02 7.37 -2.39 -0.02 1.00 16 35 H 0.16 5.00 7.52 -2.91 -0.02 4.98 16 36 H 0.40 10.73 4.32 -92.71 -0.40 10.33 16 37 H 0.06 1.83 6.24 -2.39 -0.01 1.82 16 38 H 0.08 1.98 6.80 -2.38 -0.02 1.96 16 39 H 0.08 1.73 6.99 -2.39 -0.02 1.72 16 40 H 0.02 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.02 1.00 6.10 -2.39 -0.01 0.99 16 42 H 0.38 19.72 6.63 -92.71 -0.61 19.11 16 43 H 0.25 14.71 8.31 -92.71 -0.77 13.94 16 44 H 0.09 3.16 7.09 -2.39 -0.02 3.14 16 45 H 0.11 2.09 5.88 -2.39 -0.01 2.08 16 46 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 47 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 48 H 0.11 1.74 7.37 -2.39 -0.02 1.72 16 49 H 0.12 1.81 8.07 -2.39 -0.02 1.80 16 50 H 0.09 2.31 6.03 -2.39 -0.01 2.30 16 51 H 0.12 2.37 8.14 -2.39 -0.02 2.35 16 Total: -1.00 -74.87 399.70 3.36 -71.51 By element: Atomic # 1 Polarization: 45.49 SS G_CDS: -0.07 Total: 45.42 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 6.68 Total: -2.46 kcal Atomic # 7 Polarization: -135.12 SS G_CDS: -5.22 Total: -140.34 kcal Atomic # 8 Polarization: -23.68 SS G_CDS: -0.05 Total: -23.74 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.61 kcal Total: -74.87 3.36 -71.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714174489.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.656 kcal (2) G-P(sol) polarization free energy of solvation -74.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.149 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds