Wall clock time and date at job start Tue Mar 31 2020 20:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52998 * 109.47590 * 239.99772 * 2 1 3 5 5 C 1.50701 * 109.47217 * 119.99633 * 2 1 3 6 6 N 1.30453 * 125.98848 * 241.23144 * 5 2 1 7 7 N 1.39934 * 108.89365 * 179.77724 * 6 5 2 8 8 H 0.97002 * 125.75345 * 180.29702 * 7 6 5 9 9 C 1.34260 * 108.49325 * 0.42608 * 7 6 5 10 10 C 1.38045 * 107.41575 * 359.58438 * 9 7 6 11 11 C 1.47429 * 126.41444 * 180.28676 * 10 9 7 12 12 O 1.21601 * 119.99962 * 175.80925 * 11 10 9 13 13 N 1.34785 * 119.99783 * 355.80492 * 11 10 9 14 14 C 1.46499 * 119.99583 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47046 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47327 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.64540 * 305.70250 * 16 15 14 18 18 C 1.55161 * 110.72185 * 182.55861 * 16 15 14 19 19 C 1.54906 * 101.58357 * 206.13476 * 18 16 15 20 20 N 1.47427 * 104.83153 * 37.01221 * 19 18 16 21 21 C 1.36933 * 125.64777 * 155.90511 * 20 19 18 22 22 H 1.07996 * 120.00202 * 338.06855 * 21 20 19 23 23 C 1.38816 * 119.99952 * 158.06668 * 21 20 19 24 24 N 1.31620 * 120.00195 * 155.95588 * 23 21 20 25 25 Si 1.86806 * 120.00088 * 335.95783 * 23 21 20 26 26 H 1.48504 * 109.47111 * 85.63832 * 25 23 21 27 27 H 1.48497 * 109.46944 * 205.64228 * 25 23 21 28 28 H 1.48499 * 109.46874 * 325.64253 * 25 23 21 29 29 C 1.47321 * 108.73554 * 335.71291 * 20 19 18 30 30 H 1.09007 * 109.47176 * 306.69241 * 1 2 3 31 31 H 1.09001 * 109.46879 * 66.68496 * 1 2 3 32 32 H 1.08994 * 109.47478 * 186.68452 * 1 2 3 33 33 H 1.09008 * 109.47339 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.47058 * 299.99394 * 3 2 1 35 35 H 1.08998 * 109.47616 * 60.00176 * 3 2 1 36 36 H 1.09001 * 109.46752 * 305.37082 * 4 2 1 37 37 H 1.08999 * 109.47355 * 65.36243 * 4 2 1 38 38 H 1.08997 * 109.47267 * 185.37175 * 4 2 1 39 39 H 1.08001 * 126.29160 * 179.84740 * 9 7 6 40 40 H 0.96993 * 119.99783 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47460 * 300.00070 * 14 13 11 42 42 H 1.09003 * 109.46637 * 60.00730 * 14 13 11 43 43 H 1.08999 * 109.47013 * 300.00813 * 15 14 13 44 44 H 1.09007 * 109.46988 * 60.00034 * 15 14 13 45 45 H 1.09001 * 111.00435 * 324.20983 * 18 16 15 46 46 H 1.08998 * 111.00342 * 88.02130 * 18 16 15 47 47 H 1.08996 * 110.36559 * 155.84885 * 19 18 16 48 48 H 1.08995 * 110.37115 * 278.06437 * 19 18 16 49 49 H 0.96993 * 120.00530 * 180.02562 * 24 23 21 50 50 H 1.09003 * 110.06600 * 241.87219 * 29 20 19 51 51 H 1.08998 * 109.84863 * 120.61295 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.7668 -0.1857 2.1723 7 7 3.0218 -1.1600 3.1439 8 1 3.5410 -1.0313 3.9530 9 6 2.4289 -2.3037 2.7659 10 6 1.7909 -2.0614 1.5659 11 6 1.0045 -3.0308 0.7815 12 8 0.4267 -2.6712 -0.2263 13 7 0.9260 -4.3156 1.1813 14 6 0.1441 -5.2787 0.4021 15 6 0.2188 -6.6541 1.0682 16 6 -0.5973 -7.6601 0.2542 17 1 -1.6171 -7.3024 0.1123 18 6 -0.5941 -9.0521 0.9395 19 6 -0.8227 -9.9941 -0.2688 20 7 -0.0672 -9.3790 -1.3752 21 6 0.4162 -10.0371 -2.4744 22 1 0.5785 -11.1042 -2.4369 23 6 0.6978 -9.3328 -3.6370 24 7 1.5680 -9.8102 -4.5014 25 14 -0.1584 -7.7072 -3.9748 26 1 0.5885 -6.6074 -3.3130 27 1 -0.2014 -7.4653 -5.4393 28 1 -1.5430 -7.7567 -3.4403 29 6 0.0779 -7.9380 -1.1054 30 1 -0.3634 0.6141 0.8241 31 1 -0.3633 0.4067 -0.9438 32 1 -0.3634 -1.0206 0.1196 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6003 -1.7174 -1.2985 37 1 1.7573 -0.1551 -2.1366 38 1 3.1258 -0.8053 -1.2023 39 1 2.4444 -3.2400 3.3040 40 1 1.3867 -4.6022 1.9853 41 1 -0.8951 -4.9525 0.3586 42 1 0.5479 -5.3416 -0.6084 43 1 1.2579 -6.9804 1.1122 44 1 -0.1852 -6.5908 2.0787 45 1 0.3667 -9.2517 1.4142 46 1 -1.4080 -9.1349 1.6597 47 1 -0.4353 -10.9896 -0.0523 48 1 -1.8834 -10.0458 -0.5142 49 1 1.7650 -9.3179 -5.3135 50 1 -0.4129 -7.3596 -1.8882 51 1 1.1346 -7.6755 -1.0551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714885400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:01 Heat of formation + Delta-G solvation = 54.766917 kcal Electronic energy + Delta-G solvation = -29429.754127 eV Core-core repulsion = 25559.227022 eV Total energy + Delta-G solvation = -3870.527106 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.85766 -39.34646 -38.12031 -36.91741 -35.13657 -33.00602 -31.69199 -31.26715 -30.55289 -29.17263 -27.30761 -27.14755 -26.95894 -24.69569 -23.38104 -22.95385 -22.18757 -20.53657 -20.22123 -19.73621 -18.75498 -18.39356 -16.97206 -16.59195 -16.13685 -15.71611 -15.56032 -15.15133 -15.03558 -14.54180 -14.27820 -14.23893 -14.03957 -13.50840 -13.44387 -13.05451 -12.95218 -12.61816 -12.37853 -12.20832 -12.17465 -12.01970 -11.60345 -11.54981 -11.49972 -11.25119 -11.18656 -11.06494 -11.04641 -10.79266 -10.62791 -10.47243 -10.35127 -10.14497 -9.81587 -9.79567 -9.64098 -9.31678 -9.17161 -8.91867 -8.52715 -6.98178 -5.92647 -3.22160 1.18090 1.93009 2.34595 3.15545 3.31940 3.41985 3.54743 3.57552 4.09289 4.27082 4.59932 4.68634 4.79450 4.91416 4.96322 4.98591 5.00484 5.05915 5.21644 5.24725 5.30062 5.41947 5.47610 5.55153 5.61243 5.69214 5.75237 5.82186 5.84272 5.89259 5.91438 5.95438 6.02735 6.06992 6.09435 6.16087 6.18307 6.27308 6.32209 6.36507 6.51965 6.52554 6.65893 6.68103 6.74834 6.83124 6.83725 7.21364 7.48735 7.79730 8.27277 8.35083 8.88201 9.73157 10.24305 11.23863 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002824 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.643363 B = 9912.347877 C =11045.326333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.018 3.982 3 C -0.137 4.137 4 C -0.155 4.155 5 C 0.150 3.850 6 N -0.296 5.296 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.102 3.898 10 C -0.282 4.282 11 C 0.586 3.414 12 O -0.523 6.523 13 N -0.726 5.726 14 C 0.116 3.884 15 C -0.116 4.116 16 C -0.099 4.099 17 H 0.076 0.924 18 C -0.124 4.124 19 C 0.130 3.870 20 N -0.610 5.610 21 C -0.245 4.245 22 H 0.090 0.910 23 C 0.024 3.976 24 N -0.906 5.906 25 Si 0.884 3.116 26 H -0.283 1.283 27 H -0.303 1.303 28 H -0.279 1.279 29 C 0.126 3.874 30 H 0.042 0.958 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.044 0.956 39 H 0.185 0.815 40 H 0.394 0.606 41 H 0.069 0.931 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.068 0.932 46 H 0.064 0.936 47 H 0.047 0.953 48 H 0.023 0.977 49 H 0.263 0.737 50 H 0.024 0.976 51 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.782 18.136 19.654 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.016 3.984 3 C -0.195 4.195 4 C -0.212 4.212 5 C -0.018 4.018 6 N -0.117 5.117 7 N -0.168 5.168 8 H 0.288 0.712 9 C -0.051 4.051 10 C -0.298 4.298 11 C 0.374 3.626 12 O -0.401 6.401 13 N -0.377 5.377 14 C -0.007 4.007 15 C -0.155 4.155 16 C -0.119 4.119 17 H 0.094 0.906 18 C -0.163 4.163 19 C 0.005 3.995 20 N -0.338 5.338 21 C -0.372 4.372 22 H 0.107 0.893 23 C -0.175 4.175 24 N -0.550 5.550 25 Si 0.715 3.285 26 H -0.211 1.211 27 H -0.232 1.232 28 H -0.205 1.205 29 C 0.001 3.999 30 H 0.061 0.939 31 H 0.078 0.922 32 H 0.113 0.887 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.115 0.885 37 H 0.077 0.923 38 H 0.063 0.937 39 H 0.202 0.798 40 H 0.228 0.772 41 H 0.087 0.913 42 H 0.092 0.908 43 H 0.091 0.909 44 H 0.086 0.914 45 H 0.087 0.913 46 H 0.083 0.917 47 H 0.065 0.935 48 H 0.040 0.960 49 H 0.073 0.927 50 H 0.042 0.958 51 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 1.077 19.389 19.095 27.234 hybrid contribution -0.220 0.072 0.368 0.435 sum 0.858 19.461 19.463 27.537 Atomic orbital electron populations 1.22126 0.92597 1.04989 1.01062 1.19003 0.96347 0.93873 0.89192 1.21838 1.01186 0.94721 1.01713 1.22169 1.00265 1.03801 0.94995 1.22481 0.93017 0.91363 0.94978 1.77199 1.21668 1.12664 1.00160 1.46134 1.42186 1.07670 1.20772 0.71241 1.23141 0.93958 0.92226 0.95771 1.20307 1.13417 0.96333 0.99694 1.17238 0.80014 0.81194 0.84139 1.90610 1.46291 1.77771 1.25473 1.45871 1.53317 1.08956 1.29574 1.21503 0.95982 0.87364 0.95858 1.21770 1.01449 0.93284 0.98959 1.22113 0.99145 0.94723 0.95899 0.90573 1.22771 1.01209 0.94757 0.97530 1.21624 0.94714 0.95747 0.87450 1.44862 1.63211 1.03409 1.22272 1.18631 1.36568 0.94105 0.87883 0.89262 1.25049 0.98469 0.97907 0.96048 1.69860 1.32053 1.40511 1.12538 0.86923 0.81232 0.84746 0.75587 1.21069 1.23164 1.20532 1.21762 0.98038 0.87001 0.93111 0.93851 0.92213 0.88742 0.92551 0.92260 0.92552 0.88452 0.92280 0.93660 0.79801 0.77197 0.91282 0.90750 0.90900 0.91410 0.91329 0.91686 0.93471 0.95957 0.92713 0.95822 0.94190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.20 37.16 0.30 -1.46 16 2 C 0.02 0.21 0.75 -155.66 -0.12 0.09 16 3 C -0.14 -1.39 7.96 37.16 0.30 -1.09 16 4 C -0.15 -1.94 8.22 37.16 0.31 -1.64 16 5 C 0.15 1.77 5.64 -82.02 -0.46 1.31 16 6 N -0.30 -3.21 11.93 33.90 0.40 -2.80 16 7 N -0.46 -3.25 7.29 30.85 0.22 -3.02 16 8 H 0.44 1.46 8.96 -182.72 -1.64 -0.18 16 9 C 0.10 0.69 11.52 -16.56 -0.19 0.50 16 10 C -0.28 -3.04 5.93 -105.07 -0.62 -3.66 16 11 C 0.59 7.36 7.44 -12.51 -0.09 7.27 16 12 O -0.52 -8.14 10.12 5.28 0.05 -8.09 16 13 N -0.73 -7.61 5.54 -61.38 -0.34 -7.95 16 14 C 0.12 1.49 5.54 -4.04 -0.02 1.47 16 15 C -0.12 -1.36 4.72 -26.73 -0.13 -1.49 16 16 C -0.10 -1.54 2.95 -88.78 -0.26 -1.80 16 17 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 18 C -0.12 -1.83 6.54 -24.58 -0.16 -2.00 16 19 C 0.13 2.52 7.23 -2.53 -0.02 2.50 16 20 N -0.61 -14.87 3.16 -169.83 -0.54 -15.41 16 21 C -0.24 -7.05 10.54 -15.06 -0.16 -7.21 16 22 H 0.09 2.71 8.06 -52.49 -0.42 2.28 16 23 C 0.02 0.72 5.42 -17.43 -0.09 0.63 16 24 N -0.91 -28.39 13.97 55.49 0.78 -27.62 16 25 Si 0.88 23.43 24.49 -169.99 -4.16 19.27 16 26 H -0.28 -7.30 6.82 56.52 0.39 -6.91 16 27 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 28 H -0.28 -7.32 7.01 56.52 0.40 -6.92 16 29 C 0.13 2.69 4.33 -2.90 -0.01 2.68 16 30 H 0.04 0.47 8.14 -51.92 -0.42 0.05 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.09 1.29 4.67 -51.93 -0.24 1.05 16 33 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 34 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 1.45 4.65 -51.93 -0.24 1.21 16 37 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 39 H 0.19 0.43 7.48 -52.49 -0.39 0.04 16 40 H 0.39 2.74 7.41 -40.82 -0.30 2.44 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.07 1.19 7.58 -51.93 -0.39 0.80 16 43 H 0.07 0.86 8.00 -51.93 -0.42 0.44 16 44 H 0.07 0.61 8.14 -51.92 -0.42 0.19 16 45 H 0.07 0.97 8.05 -51.93 -0.42 0.55 16 46 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 48 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 50 H 0.02 0.57 3.55 -51.93 -0.18 0.39 16 51 H 0.04 0.89 7.73 -51.93 -0.40 0.49 16 LS Contribution 390.64 15.07 5.89 5.89 Total: -1.00 -36.05 390.64 -8.84 -44.89 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -9.70 Total: -1.27 kcal Atomic # 6 Polarization: -2.46 SS G_CDS: -1.43 Total: -3.89 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.53 Total: -56.80 kcal Atomic # 8 Polarization: -8.14 SS G_CDS: 0.05 Total: -8.09 kcal Atomic # 14 Polarization: 23.43 SS G_CDS: -4.16 Total: 19.27 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.05 -8.84 -44.89 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714885400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.654 kcal (2) G-P(sol) polarization free energy of solvation -36.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.887 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds