Wall clock time and date at job start Tue Mar 31 2020 20:27:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53000 * 109.47097 * 2 1 4 4 C 1.52998 * 109.47590 * 239.99772 * 2 1 3 5 5 C 1.50701 * 109.47217 * 119.99633 * 2 1 3 6 6 N 1.30453 * 125.98848 * 241.23144 * 5 2 1 7 7 N 1.39934 * 108.89365 * 179.77724 * 6 5 2 8 8 H 0.97002 * 125.75345 * 180.29702 * 7 6 5 9 9 C 1.34260 * 108.49325 * 0.42608 * 7 6 5 10 10 C 1.38045 * 107.41575 * 359.58438 * 9 7 6 11 11 C 1.47429 * 126.41444 * 180.28676 * 10 9 7 12 12 O 1.21601 * 119.99962 * 175.80925 * 11 10 9 13 13 N 1.34785 * 119.99783 * 355.80492 * 11 10 9 14 14 C 1.46499 * 119.99583 * 179.97438 * 13 11 10 15 15 C 1.53001 * 109.47046 * 180.02562 * 14 13 11 16 16 C 1.52994 * 109.47327 * 180.02562 * 15 14 13 17 17 H 1.09000 * 110.64540 * 305.70250 * 16 15 14 18 18 C 1.55161 * 110.72185 * 182.55861 * 16 15 14 19 19 C 1.54906 * 101.58357 * 206.13476 * 18 16 15 20 20 N 1.47427 * 104.83153 * 37.01221 * 19 18 16 21 21 C 1.36933 * 125.64777 * 155.90511 * 20 19 18 22 22 H 1.07996 * 120.00202 * 338.06855 * 21 20 19 23 23 C 1.38816 * 119.99952 * 158.06668 * 21 20 19 24 24 N 1.31620 * 120.00195 * 155.95588 * 23 21 20 25 25 Si 1.86806 * 120.00088 * 335.95783 * 23 21 20 26 26 H 1.48504 * 109.47111 * 85.63832 * 25 23 21 27 27 H 1.48497 * 109.46944 * 205.64228 * 25 23 21 28 28 H 1.48499 * 109.46874 * 325.64253 * 25 23 21 29 29 C 1.47321 * 108.73554 * 335.71291 * 20 19 18 30 30 H 1.09007 * 109.47176 * 306.69241 * 1 2 3 31 31 H 1.09001 * 109.46879 * 66.68496 * 1 2 3 32 32 H 1.08994 * 109.47478 * 186.68452 * 1 2 3 33 33 H 1.09008 * 109.47339 * 180.02562 * 3 2 1 34 34 H 1.09009 * 109.47058 * 299.99394 * 3 2 1 35 35 H 1.08998 * 109.47616 * 60.00176 * 3 2 1 36 36 H 1.09001 * 109.46752 * 305.37082 * 4 2 1 37 37 H 1.08999 * 109.47355 * 65.36243 * 4 2 1 38 38 H 1.08997 * 109.47267 * 185.37175 * 4 2 1 39 39 H 1.08001 * 126.29160 * 179.84740 * 9 7 6 40 40 H 0.96993 * 119.99783 * 0.02562 * 13 11 10 41 41 H 1.08999 * 109.47460 * 300.00070 * 14 13 11 42 42 H 1.09003 * 109.46637 * 60.00730 * 14 13 11 43 43 H 1.08999 * 109.47013 * 300.00813 * 15 14 13 44 44 H 1.09007 * 109.46988 * 60.00034 * 15 14 13 45 45 H 1.09001 * 111.00435 * 324.20983 * 18 16 15 46 46 H 1.08998 * 111.00342 * 88.02130 * 18 16 15 47 47 H 1.08996 * 110.36559 * 155.84885 * 19 18 16 48 48 H 1.08995 * 110.37115 * 278.06437 * 19 18 16 49 49 H 0.96993 * 120.00530 * 180.02562 * 24 23 21 50 50 H 1.09003 * 110.06600 * 241.87219 * 29 20 19 51 51 H 1.08998 * 109.84863 * 120.61295 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0323 -0.7103 1.2305 6 7 2.7668 -0.1857 2.1723 7 7 3.0218 -1.1600 3.1439 8 1 3.5410 -1.0313 3.9530 9 6 2.4289 -2.3037 2.7659 10 6 1.7909 -2.0614 1.5659 11 6 1.0045 -3.0308 0.7815 12 8 0.4267 -2.6712 -0.2263 13 7 0.9260 -4.3156 1.1813 14 6 0.1441 -5.2787 0.4021 15 6 0.2188 -6.6541 1.0682 16 6 -0.5973 -7.6601 0.2542 17 1 -1.6171 -7.3024 0.1123 18 6 -0.5941 -9.0521 0.9395 19 6 -0.8227 -9.9941 -0.2688 20 7 -0.0672 -9.3790 -1.3752 21 6 0.4162 -10.0371 -2.4744 22 1 0.5785 -11.1042 -2.4369 23 6 0.6978 -9.3328 -3.6370 24 7 1.5680 -9.8102 -4.5014 25 14 -0.1584 -7.7072 -3.9748 26 1 0.5885 -6.6074 -3.3130 27 1 -0.2014 -7.4653 -5.4393 28 1 -1.5430 -7.7567 -3.4403 29 6 0.0779 -7.9380 -1.1054 30 1 -0.3634 0.6141 0.8241 31 1 -0.3633 0.4067 -0.9438 32 1 -0.3634 -1.0206 0.1196 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8901 35 1 1.6767 1.9564 0.8900 36 1 1.6003 -1.7174 -1.2985 37 1 1.7573 -0.1551 -2.1366 38 1 3.1258 -0.8053 -1.2023 39 1 2.4444 -3.2400 3.3040 40 1 1.3867 -4.6022 1.9853 41 1 -0.8951 -4.9525 0.3586 42 1 0.5479 -5.3416 -0.6084 43 1 1.2579 -6.9804 1.1122 44 1 -0.1852 -6.5908 2.0787 45 1 0.3667 -9.2517 1.4142 46 1 -1.4080 -9.1349 1.6597 47 1 -0.4353 -10.9896 -0.0523 48 1 -1.8834 -10.0458 -0.5142 49 1 1.7650 -9.3179 -5.3135 50 1 -0.4129 -7.3596 -1.8882 51 1 1.1346 -7.6755 -1.0551 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714885400.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:59 Heat of formation + Delta-G solvation = 28.303686 kcal Electronic energy + Delta-G solvation = -29430.901659 eV Core-core repulsion = 25559.227022 eV Total energy + Delta-G solvation = -3871.674638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.56231 -40.29716 -39.52983 -37.78374 -36.26872 -34.75177 -33.18730 -32.00297 -31.60310 -30.60184 -28.52426 -28.10743 -27.97051 -26.39339 -24.46175 -23.76692 -23.25056 -21.85539 -21.52469 -20.80585 -19.50668 -19.16269 -19.00497 -17.74519 -17.41396 -16.69048 -16.57705 -16.22434 -15.97416 -15.81164 -15.40935 -15.24589 -15.17256 -14.95250 -14.80316 -14.35835 -14.17739 -13.91920 -13.77005 -13.54397 -13.15511 -13.07902 -13.00461 -12.88589 -12.67128 -12.39226 -12.38393 -12.35810 -12.06436 -12.01398 -11.92962 -11.80311 -11.74015 -11.41021 -11.38676 -11.16793 -10.72173 -10.61478 -10.53029 -10.04425 -9.69817 -9.02030 -8.23195 -5.46738 0.57232 1.10840 1.27417 1.33796 1.43033 1.81312 2.30091 2.37413 2.47558 3.00642 3.37744 3.40713 3.67929 3.71208 3.90127 4.03763 4.05605 4.08486 4.10228 4.23894 4.35908 4.39402 4.46750 4.52506 4.55989 4.63995 4.68003 4.77190 4.81024 4.83947 4.91095 4.92532 5.00073 5.05886 5.08473 5.11539 5.12485 5.16526 5.19952 5.26421 5.33182 5.41488 5.46098 5.53150 5.55558 5.72523 5.75734 6.08384 6.29495 6.50877 6.74462 6.78230 7.43318 7.54146 8.13257 8.97499 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014697 B = 0.002824 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.643363 B = 9912.347877 C =11045.326333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.015 3.985 3 C -0.130 4.130 4 C -0.150 4.150 5 C 0.132 3.868 6 N -0.320 5.320 7 N -0.448 5.448 8 H 0.461 0.539 9 C 0.137 3.863 10 C -0.318 4.318 11 C 0.581 3.419 12 O -0.562 6.562 13 N -0.712 5.712 14 C 0.121 3.879 15 C -0.102 4.102 16 C -0.090 4.090 17 H 0.085 0.915 18 C -0.105 4.105 19 C 0.117 3.883 20 N -0.632 5.632 21 C -0.234 4.234 22 H 0.061 0.939 23 C -0.031 4.031 24 N -0.952 5.952 25 Si 0.944 3.056 26 H -0.279 1.279 27 H -0.310 1.310 28 H -0.275 1.275 29 C 0.118 3.882 30 H 0.048 0.952 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.052 0.948 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.074 0.926 37 H 0.063 0.937 38 H 0.041 0.959 39 H 0.237 0.763 40 H 0.415 0.585 41 H 0.065 0.935 42 H 0.032 0.968 43 H 0.076 0.924 44 H 0.113 0.887 45 H 0.080 0.920 46 H 0.108 0.892 47 H 0.045 0.955 48 H 0.027 0.973 49 H 0.262 0.738 50 H 0.001 0.999 51 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 19.112 23.997 30.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.013 3.987 3 C -0.187 4.187 4 C -0.208 4.208 5 C -0.036 4.036 6 N -0.142 5.142 7 N -0.154 5.154 8 H 0.309 0.691 9 C -0.018 4.018 10 C -0.333 4.333 11 C 0.370 3.630 12 O -0.444 6.444 13 N -0.364 5.364 14 C -0.003 4.003 15 C -0.140 4.140 16 C -0.109 4.109 17 H 0.104 0.896 18 C -0.143 4.143 19 C -0.007 4.007 20 N -0.359 5.359 21 C -0.363 4.363 22 H 0.079 0.921 23 C -0.226 4.226 24 N -0.599 5.599 25 Si 0.775 3.225 26 H -0.206 1.206 27 H -0.238 1.238 28 H -0.201 1.201 29 C -0.007 4.007 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.253 0.747 40 H 0.252 0.748 41 H 0.083 0.917 42 H 0.050 0.950 43 H 0.094 0.906 44 H 0.132 0.868 45 H 0.098 0.902 46 H 0.126 0.874 47 H 0.063 0.937 48 H 0.045 0.955 49 H 0.071 0.929 50 H 0.019 0.981 51 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 0.670 20.377 23.531 31.135 hybrid contribution -0.057 -0.334 -0.888 0.951 sum 0.613 20.043 22.643 30.246 Atomic orbital electron populations 1.22036 0.92977 1.03875 1.01318 1.18971 0.96097 0.94567 0.89107 1.21764 1.00851 0.93904 1.02181 1.22085 0.99784 1.02806 0.96095 1.22502 0.93716 0.92167 0.95239 1.77123 1.22047 1.14135 1.00883 1.46175 1.41489 1.07137 1.20585 0.69072 1.23791 0.90691 0.93358 0.93947 1.20268 1.15594 0.95777 1.01641 1.17578 0.79701 0.81861 0.83818 1.90600 1.47949 1.78540 1.27264 1.45618 1.52961 1.07904 1.29894 1.21286 0.95745 0.88816 0.94454 1.21679 1.01311 0.90851 1.00125 1.22109 0.99591 0.96491 0.92758 0.89620 1.22730 1.03572 0.92026 0.95949 1.21932 0.94144 0.96827 0.87847 1.45082 1.63790 1.05011 1.21984 1.18643 1.34962 0.93284 0.89379 0.92121 1.25594 0.99482 1.01169 0.96393 1.69964 1.34100 1.42400 1.13387 0.85939 0.80288 0.81487 0.74742 1.20638 1.23844 1.20122 1.21898 0.97645 0.84851 0.96275 0.93243 0.92098 0.90568 0.92907 0.91385 0.92420 0.90745 0.91800 0.94010 0.74702 0.74808 0.91668 0.94953 0.90563 0.86836 0.90161 0.87360 0.93672 0.95548 0.92893 0.98148 0.95737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.45 8.20 71.98 0.59 -2.85 16 2 C 0.01 0.34 0.75 -52.93 -0.04 0.31 16 3 C -0.13 -2.57 7.96 71.98 0.57 -2.00 16 4 C -0.15 -3.91 8.22 71.98 0.59 -3.31 16 5 C 0.13 2.99 5.64 43.51 0.25 3.23 16 6 N -0.32 -6.38 11.93 -46.68 -0.56 -6.94 16 7 N -0.45 -4.74 7.29 -56.31 -0.41 -5.15 16 8 H 0.46 1.22 8.96 -213.42 -1.91 -0.69 16 9 C 0.14 1.30 11.52 84.28 0.97 2.27 16 10 C -0.32 -6.25 5.93 -20.15 -0.12 -6.37 16 11 C 0.58 14.02 7.44 86.66 0.64 14.67 16 12 O -0.56 -17.96 10.12 -4.03 -0.04 -18.00 16 13 N -0.71 -13.09 5.54 -466.36 -2.59 -15.67 16 14 C 0.12 2.88 5.54 86.38 0.48 3.36 16 15 C -0.10 -1.95 4.72 30.59 0.14 -1.80 16 16 C -0.09 -2.48 2.95 -9.60 -0.03 -2.50 16 17 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 18 C -0.10 -2.61 6.54 31.99 0.21 -2.40 16 19 C 0.12 4.29 7.23 86.85 0.63 4.91 16 20 N -0.63 -30.62 3.16 -691.23 -2.18 -32.81 16 21 C -0.23 -13.82 10.54 84.04 0.89 -12.93 16 22 H 0.06 3.84 8.06 -2.91 -0.02 3.82 16 23 C -0.03 -1.92 5.42 84.86 0.46 -1.46 16 24 N -0.95 -61.88 13.97 21.65 0.30 -61.57 16 25 Si 0.94 50.39 24.49 68.60 1.68 52.07 16 26 H -0.28 -14.50 6.82 99.48 0.68 -13.82 16 27 H -0.31 -16.63 7.11 99.48 0.71 -15.92 16 28 H -0.28 -14.26 7.01 99.48 0.70 -13.56 16 29 C 0.12 4.96 4.33 86.67 0.38 5.33 16 30 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 2.15 4.67 -2.39 -0.01 2.14 16 33 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 34 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.07 2.34 4.65 -2.39 -0.01 2.33 16 37 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 38 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 39 H 0.24 -0.43 7.48 -2.91 -0.02 -0.45 16 40 H 0.41 3.90 7.41 -92.71 -0.69 3.21 16 41 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.03 1.04 7.58 -2.39 -0.02 1.02 16 43 H 0.08 1.47 8.00 -2.39 -0.02 1.45 16 44 H 0.11 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.08 1.86 8.05 -2.39 -0.02 1.84 16 46 H 0.11 1.88 8.14 -2.39 -0.02 1.86 16 47 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 48 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 49 H 0.26 16.24 8.31 -92.71 -0.77 15.47 16 50 H 0.00 0.05 3.55 -2.39 -0.01 0.04 16 51 H 0.02 1.10 7.73 -2.39 -0.02 1.08 16 Total: -1.00 -85.07 390.64 1.12 -83.95 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -1.69 Total: 5.67 kcal Atomic # 6 Polarization: -8.15 SS G_CDS: 6.61 Total: -1.54 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -5.44 Total: -122.15 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.04 Total: -18.00 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.68 Total: 52.07 kcal Total: -85.07 1.12 -83.95 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714885400.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.250 kcal (2) G-P(sol) polarization free energy of solvation -85.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds