Wall clock time and date at job start Tue Mar 31 2020 20:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 C 1.52997 * 109.46747 * 239.99850 * 2 1 3 5 5 C 1.50704 * 109.47099 * 120.00260 * 2 1 3 6 6 N 1.30454 * 125.98324 * 242.24298 * 5 2 1 7 7 N 1.39936 * 108.89030 * 180.26432 * 6 5 2 8 8 H 0.97008 * 125.75067 * 179.74156 * 7 6 5 9 9 C 1.34255 * 108.49495 * 359.73356 * 7 6 5 10 10 C 1.38046 * 107.41599 * 0.02562 * 9 7 6 11 11 C 1.47433 * 126.41127 * 179.97438 * 10 9 7 12 12 O 1.21607 * 119.99642 * 174.69812 * 11 10 9 13 13 N 1.34774 * 120.00393 * 354.69649 * 11 10 9 14 14 C 1.46499 * 120.00060 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46976 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47150 * 180.02562 * 15 14 13 17 17 H 1.09008 * 110.64271 * 54.29573 * 16 15 14 18 18 C 1.55162 * 110.87628 * 177.54580 * 16 15 14 19 19 C 1.54904 * 101.58496 * 153.93536 * 18 16 15 20 20 N 1.47423 * 104.83171 * 322.99237 * 19 18 16 21 21 C 1.36944 * 125.65102 * 204.09376 * 20 19 18 22 22 H 1.07993 * 120.00335 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99517 * 0.04043 * 21 20 19 24 24 N 1.31618 * 120.00101 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99858 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46991 * 89.99911 * 25 23 21 27 27 H 1.48503 * 109.47381 * 209.99656 * 25 23 21 28 28 H 1.48494 * 109.47409 * 330.00179 * 25 23 21 29 29 C 1.47024 * 108.70542 * 24.13001 * 20 19 18 30 30 H 1.09004 * 109.46989 * 308.66297 * 1 2 3 31 31 H 1.08992 * 109.47284 * 68.66697 * 1 2 3 32 32 H 1.09003 * 109.47069 * 188.66778 * 1 2 3 33 33 H 1.08999 * 109.46826 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47002 * 299.99895 * 3 2 1 35 35 H 1.09001 * 109.47087 * 60.00265 * 3 2 1 36 36 H 1.08994 * 109.47341 * 291.54441 * 4 2 1 37 37 H 1.09004 * 109.47393 * 51.55432 * 4 2 1 38 38 H 1.09009 * 109.46569 * 171.54692 * 4 2 1 39 39 H 1.08004 * 126.29224 * 180.02562 * 9 7 6 40 40 H 0.96999 * 119.99891 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.46747 * 60.00434 * 14 13 11 42 42 H 1.09004 * 109.47224 * 299.99786 * 14 13 11 43 43 H 1.09001 * 109.47409 * 59.99892 * 15 14 13 44 44 H 1.08999 * 109.46984 * 300.00160 * 15 14 13 45 45 H 1.09000 * 111.00167 * 272.01466 * 18 16 15 46 46 H 1.09002 * 111.00195 * 35.85839 * 18 16 15 47 47 H 1.09000 * 110.36625 * 204.15534 * 19 18 16 48 48 H 1.08998 * 110.45897 * 81.87390 * 19 18 16 49 49 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88041 * 239.52485 * 29 20 19 51 51 H 1.08992 * 110.01437 * 118.42983 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 2.7514 -0.1809 2.1815 7 7 3.0217 -1.1602 3.1438 8 1 3.5408 -1.0314 3.9532 9 6 2.4416 -2.3079 2.7583 10 6 1.8048 -2.0659 1.5576 11 6 1.0359 -3.0409 0.7628 12 8 0.4401 -2.6783 -0.2334 13 7 0.9932 -4.3340 1.1402 14 6 0.2287 -5.3027 0.3506 15 6 0.3439 -6.6872 0.9914 16 6 -0.4540 -7.6990 0.1666 17 1 -0.1397 -7.6772 -0.8770 18 6 -0.3091 -9.1280 0.7536 19 6 -1.6224 -9.7956 0.2748 20 7 -2.6405 -8.7333 0.3654 21 6 -3.9891 -8.9297 0.5000 22 1 -4.6553 -8.0816 0.5575 23 6 -4.4998 -10.2189 0.5630 24 7 -3.6879 -11.2525 0.4928 25 14 -6.3392 -10.4869 0.7474 26 1 -6.9644 -10.5714 -0.5970 27 1 -6.5837 -11.7511 1.4872 28 1 -6.9321 -9.3513 1.4984 29 6 -1.9685 -7.4280 0.2864 30 1 -0.3633 0.6421 0.8025 31 1 -0.3633 0.3738 -0.9572 32 1 -0.3633 -1.0160 0.1549 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8053 -1.7832 -1.1769 37 1 1.5586 -0.3021 -2.1328 38 1 3.1195 -0.5923 -1.3280 39 1 2.4682 -3.2477 3.2898 40 1 1.4681 -4.6232 1.9350 41 1 0.6248 -5.3375 -0.6643 42 1 -0.8187 -5.0022 0.3219 43 1 -0.0523 -6.6521 2.0062 44 1 1.3912 -6.9880 1.0206 45 1 0.5613 -9.6350 0.3373 46 1 -0.2594 -9.0999 1.8422 47 1 -1.8842 -10.6286 0.9272 48 1 -1.5221 -10.1381 -0.7551 49 1 -4.0449 -12.1534 0.5364 50 1 -2.1716 -6.8513 1.1887 51 1 -2.3176 -6.8811 -0.5894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714885401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:09 Heat of formation + Delta-G solvation = 48.619542 kcal Electronic energy + Delta-G solvation = -28919.169383 eV Core-core repulsion = 25048.375707 eV Total energy + Delta-G solvation = -3870.793676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.87212 -39.32843 -37.80609 -36.92107 -35.07904 -33.05647 -31.42700 -31.23152 -30.24094 -28.89453 -27.25105 -27.18730 -26.51583 -24.79225 -23.31281 -22.94582 -22.07861 -20.45669 -20.05644 -19.39686 -18.69522 -18.41925 -16.86223 -16.59933 -15.81888 -15.66949 -15.31546 -15.16140 -14.88062 -14.58634 -14.28588 -14.17667 -13.99479 -13.61545 -13.43221 -13.04473 -12.50326 -12.27488 -12.23815 -12.15951 -11.91242 -11.72095 -11.59012 -11.56424 -11.38129 -11.27606 -11.09309 -11.01494 -10.87661 -10.74651 -10.65080 -10.12996 -10.03555 -9.92946 -9.82979 -9.75374 -9.66398 -9.42911 -9.18664 -8.91088 -8.61621 -6.78695 -5.62075 -3.03219 1.17633 1.91916 2.33788 3.18097 3.30497 3.42071 3.47038 3.48833 4.08310 4.26698 4.52169 4.66644 4.84849 4.95208 4.96878 5.07867 5.12570 5.21807 5.24078 5.33919 5.51069 5.58762 5.62453 5.65773 5.66359 5.82074 5.83169 5.85258 5.88726 5.92372 5.99916 6.01336 6.04376 6.19378 6.24593 6.25590 6.34946 6.41329 6.45463 6.61619 6.64579 6.66734 6.73356 6.80516 7.01268 7.20478 7.49215 7.56065 7.67102 7.89171 8.25117 8.40318 9.26173 9.87380 10.52720 11.41867 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.002076 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.927855 B =13487.040622 C =14003.551833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.017 3.983 3 C -0.137 4.137 4 C -0.148 4.148 5 C 0.150 3.850 6 N -0.296 5.296 7 N -0.464 5.464 8 H 0.443 0.557 9 C 0.102 3.898 10 C -0.283 4.283 11 C 0.586 3.414 12 O -0.524 6.524 13 N -0.727 5.727 14 C 0.120 3.880 15 C -0.116 4.116 16 C -0.097 4.097 17 H 0.072 0.928 18 C -0.138 4.138 19 C 0.151 3.849 20 N -0.606 5.606 21 C -0.220 4.220 22 H 0.077 0.923 23 C -0.014 4.014 24 N -0.924 5.924 25 Si 0.914 3.086 26 H -0.289 1.289 27 H -0.291 1.291 28 H -0.282 1.282 29 C 0.140 3.860 30 H 0.043 0.957 31 H 0.059 0.941 32 H 0.093 0.907 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.060 0.940 38 H 0.043 0.957 39 H 0.185 0.815 40 H 0.394 0.606 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.069 0.931 44 H 0.064 0.936 45 H 0.056 0.944 46 H 0.059 0.941 47 H 0.105 0.895 48 H 0.011 0.989 49 H 0.251 0.749 50 H 0.022 0.978 51 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.646 19.595 4.853 26.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 C -0.195 4.195 4 C -0.205 4.205 5 C -0.019 4.019 6 N -0.118 5.118 7 N -0.168 5.168 8 H 0.288 0.712 9 C -0.051 4.051 10 C -0.299 4.299 11 C 0.374 3.626 12 O -0.403 6.403 13 N -0.378 5.378 14 C -0.003 4.003 15 C -0.154 4.154 16 C -0.117 4.117 17 H 0.090 0.910 18 C -0.177 4.177 19 C 0.026 3.974 20 N -0.332 5.332 21 C -0.348 4.348 22 H 0.095 0.905 23 C -0.209 4.209 24 N -0.573 5.573 25 Si 0.744 3.256 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.207 1.207 29 C 0.014 3.986 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.111 0.889 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.108 0.892 37 H 0.079 0.921 38 H 0.062 0.938 39 H 0.202 0.798 40 H 0.228 0.772 41 H 0.086 0.914 42 H 0.092 0.908 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.077 0.923 47 H 0.123 0.877 48 H 0.029 0.971 49 H 0.062 0.938 50 H 0.040 0.960 51 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges 17.616 20.739 4.577 27.593 hybrid contribution -0.705 -1.039 0.796 1.486 sum 16.911 19.700 5.373 26.513 Atomic orbital electron populations 1.22104 0.92433 1.04849 1.01213 1.19006 0.96436 0.93862 0.89168 1.21838 1.01063 0.94764 1.01791 1.22095 0.99449 1.03753 0.95246 1.22482 0.93234 0.91288 0.94889 1.77196 1.21812 1.12442 1.00300 1.46139 1.42325 1.07247 1.21051 0.71231 1.23161 0.93967 0.92259 0.95679 1.20325 1.13685 0.96208 0.99639 1.17226 0.80025 0.81269 0.84106 1.90663 1.45046 1.78180 1.26377 1.45920 1.53298 1.08143 1.30396 1.21496 0.96589 0.87371 0.94885 1.21781 1.00529 0.93094 1.00024 1.22090 0.95813 0.94979 0.98808 0.90956 1.23032 1.00073 0.94801 0.99794 1.21918 0.83635 0.92941 0.98924 1.44525 1.02896 0.99842 1.85896 1.19097 0.81401 0.92315 1.42029 0.90540 1.24785 0.98066 0.95408 1.02604 1.69806 1.32180 0.97571 1.57708 0.86079 0.84650 0.77208 0.77627 1.21648 1.21701 1.20720 1.21360 0.89961 0.89674 0.97610 0.93777 0.92189 0.88871 0.92608 0.92252 0.92493 0.89200 0.92135 0.93791 0.79781 0.77223 0.91377 0.90832 0.91270 0.91736 0.92537 0.92259 0.87740 0.97148 0.93817 0.96008 0.96236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.20 37.16 0.30 -1.37 16 2 C 0.02 0.19 0.75 -155.66 -0.12 0.07 16 3 C -0.14 -1.28 7.94 37.16 0.30 -0.99 16 4 C -0.15 -1.61 8.19 37.16 0.30 -1.31 16 5 C 0.15 1.66 5.64 -82.02 -0.46 1.20 16 6 N -0.30 -3.06 11.93 33.90 0.40 -2.66 16 7 N -0.46 -3.08 7.29 30.85 0.22 -2.86 16 8 H 0.44 1.34 8.96 -182.71 -1.64 -0.30 16 9 C 0.10 0.66 11.52 -16.56 -0.19 0.47 16 10 C -0.28 -2.87 5.89 -105.07 -0.62 -3.48 16 11 C 0.59 6.84 7.20 -12.52 -0.09 6.75 16 12 O -0.52 -7.55 10.41 5.27 0.05 -7.50 16 13 N -0.73 -7.12 5.54 -61.38 -0.34 -7.47 16 14 C 0.12 1.42 5.54 -4.04 -0.02 1.40 16 15 C -0.12 -1.39 4.73 -26.73 -0.13 -1.52 16 16 C -0.10 -1.59 2.95 -88.78 -0.26 -1.85 16 17 H 0.07 1.16 8.14 -51.92 -0.42 0.73 16 18 C -0.14 -2.51 6.54 -24.58 -0.16 -2.67 16 19 C 0.15 3.65 5.89 -2.53 -0.01 3.64 16 20 N -0.61 -15.64 3.39 -170.08 -0.58 -16.22 16 21 C -0.22 -6.21 10.27 -15.06 -0.15 -6.37 16 22 H 0.08 2.10 7.83 -52.49 -0.41 1.68 16 23 C -0.01 -0.38 5.49 -17.43 -0.10 -0.48 16 24 N -0.92 -27.10 10.09 55.49 0.56 -26.55 16 25 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 C 0.14 2.89 6.10 -3.06 -0.02 2.87 16 30 H 0.04 0.47 8.13 -51.93 -0.42 0.05 16 31 H 0.06 0.62 8.07 -51.93 -0.42 0.21 16 32 H 0.09 1.25 4.77 -51.93 -0.25 1.00 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 36 H 0.09 1.15 4.59 -51.93 -0.24 0.91 16 37 H 0.06 0.61 8.07 -51.93 -0.42 0.19 16 38 H 0.04 0.45 8.13 -51.92 -0.42 0.02 16 39 H 0.19 0.40 7.49 -52.48 -0.39 0.01 16 40 H 0.39 2.64 7.42 -40.82 -0.30 2.33 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 1.02 7.58 -51.93 -0.39 0.63 16 43 H 0.07 0.84 8.01 -51.93 -0.42 0.42 16 44 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 45 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 46 H 0.06 1.05 8.05 -51.93 -0.42 0.63 16 47 H 0.10 2.85 5.87 -51.93 -0.31 2.54 16 48 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 49 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 50 H 0.02 0.45 7.73 -51.93 -0.40 0.05 16 51 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 394.65 15.07 5.95 5.95 Total: -1.00 -34.19 394.65 -9.97 -44.16 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: -9.79 Total: -0.47 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -1.43 Total: -3.64 kcal Atomic # 7 Polarization: -56.01 SS G_CDS: 0.27 Total: -55.74 kcal Atomic # 8 Polarization: -7.55 SS G_CDS: 0.05 Total: -7.50 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.19 -9.97 -44.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714885401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.781 kcal (2) G-P(sol) polarization free energy of solvation -34.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.161 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds