Wall clock time and date at job start Tue Mar 31 2020 20:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.46933 * 2 1 4 4 C 1.52997 * 109.46747 * 239.99850 * 2 1 3 5 5 C 1.50704 * 109.47099 * 120.00260 * 2 1 3 6 6 N 1.30454 * 125.98324 * 242.24298 * 5 2 1 7 7 N 1.39936 * 108.89030 * 180.26432 * 6 5 2 8 8 H 0.97008 * 125.75067 * 179.74156 * 7 6 5 9 9 C 1.34255 * 108.49495 * 359.73356 * 7 6 5 10 10 C 1.38046 * 107.41599 * 0.02562 * 9 7 6 11 11 C 1.47433 * 126.41127 * 179.97438 * 10 9 7 12 12 O 1.21607 * 119.99642 * 174.69812 * 11 10 9 13 13 N 1.34774 * 120.00393 * 354.69649 * 11 10 9 14 14 C 1.46499 * 120.00060 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.46976 * 180.02562 * 14 13 11 16 16 C 1.52995 * 109.47150 * 180.02562 * 15 14 13 17 17 H 1.09008 * 110.64271 * 54.29573 * 16 15 14 18 18 C 1.55162 * 110.87628 * 177.54580 * 16 15 14 19 19 C 1.54904 * 101.58496 * 153.93536 * 18 16 15 20 20 N 1.47423 * 104.83171 * 322.99237 * 19 18 16 21 21 C 1.36944 * 125.65102 * 204.09376 * 20 19 18 22 22 H 1.07993 * 120.00335 * 180.02562 * 21 20 19 23 23 C 1.38812 * 119.99517 * 0.04043 * 21 20 19 24 24 N 1.31618 * 120.00101 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99858 * 179.97438 * 23 21 20 26 26 H 1.48504 * 109.46991 * 89.99911 * 25 23 21 27 27 H 1.48503 * 109.47381 * 209.99656 * 25 23 21 28 28 H 1.48494 * 109.47409 * 330.00179 * 25 23 21 29 29 C 1.47024 * 108.70542 * 24.13001 * 20 19 18 30 30 H 1.09004 * 109.46989 * 308.66297 * 1 2 3 31 31 H 1.08992 * 109.47284 * 68.66697 * 1 2 3 32 32 H 1.09003 * 109.47069 * 188.66778 * 1 2 3 33 33 H 1.08999 * 109.46826 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47002 * 299.99895 * 3 2 1 35 35 H 1.09001 * 109.47087 * 60.00265 * 3 2 1 36 36 H 1.08994 * 109.47341 * 291.54441 * 4 2 1 37 37 H 1.09004 * 109.47393 * 51.55432 * 4 2 1 38 38 H 1.09009 * 109.46569 * 171.54692 * 4 2 1 39 39 H 1.08004 * 126.29224 * 180.02562 * 9 7 6 40 40 H 0.96999 * 119.99891 * 0.02562 * 13 11 10 41 41 H 1.09000 * 109.46747 * 60.00434 * 14 13 11 42 42 H 1.09004 * 109.47224 * 299.99786 * 14 13 11 43 43 H 1.09001 * 109.47409 * 59.99892 * 15 14 13 44 44 H 1.08999 * 109.46984 * 300.00160 * 15 14 13 45 45 H 1.09000 * 111.00167 * 272.01466 * 18 16 15 46 46 H 1.09002 * 111.00195 * 35.85839 * 18 16 15 47 47 H 1.09000 * 110.36625 * 204.15534 * 19 18 16 48 48 H 1.08998 * 110.45897 * 81.87390 * 19 18 16 49 49 H 0.97004 * 119.99992 * 180.02562 * 24 23 21 50 50 H 1.09000 * 109.88041 * 239.52485 * 29 20 19 51 51 H 1.08992 * 110.01437 * 118.42983 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7105 1.2305 6 7 2.7514 -0.1809 2.1815 7 7 3.0217 -1.1602 3.1438 8 1 3.5408 -1.0314 3.9532 9 6 2.4416 -2.3079 2.7583 10 6 1.8048 -2.0659 1.5576 11 6 1.0359 -3.0409 0.7628 12 8 0.4401 -2.6783 -0.2334 13 7 0.9932 -4.3340 1.1402 14 6 0.2287 -5.3027 0.3506 15 6 0.3439 -6.6872 0.9914 16 6 -0.4540 -7.6990 0.1666 17 1 -0.1397 -7.6772 -0.8770 18 6 -0.3091 -9.1280 0.7536 19 6 -1.6224 -9.7956 0.2748 20 7 -2.6405 -8.7333 0.3654 21 6 -3.9891 -8.9297 0.5000 22 1 -4.6553 -8.0816 0.5575 23 6 -4.4998 -10.2189 0.5630 24 7 -3.6879 -11.2525 0.4928 25 14 -6.3392 -10.4869 0.7474 26 1 -6.9644 -10.5714 -0.5970 27 1 -6.5837 -11.7511 1.4872 28 1 -6.9321 -9.3513 1.4984 29 6 -1.9685 -7.4280 0.2864 30 1 -0.3633 0.6421 0.8025 31 1 -0.3633 0.3738 -0.9572 32 1 -0.3633 -1.0160 0.1549 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.8053 -1.7832 -1.1769 37 1 1.5586 -0.3021 -2.1328 38 1 3.1195 -0.5923 -1.3280 39 1 2.4682 -3.2477 3.2898 40 1 1.4681 -4.6232 1.9350 41 1 0.6248 -5.3375 -0.6643 42 1 -0.8187 -5.0022 0.3219 43 1 -0.0523 -6.6521 2.0062 44 1 1.3912 -6.9880 1.0206 45 1 0.5613 -9.6350 0.3373 46 1 -0.2594 -9.0999 1.8422 47 1 -1.8842 -10.6286 0.9272 48 1 -1.5221 -10.1381 -0.7551 49 1 -4.0449 -12.1534 0.5364 50 1 -2.1716 -6.8513 1.1887 51 1 -2.3176 -6.8811 -0.5894 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714885401.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:07 Heat of formation + Delta-G solvation = 25.656350 kcal Electronic energy + Delta-G solvation = -28920.165141 eV Core-core repulsion = 25048.375707 eV Total energy + Delta-G solvation = -3871.789435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.53254 -40.21657 -39.31168 -37.73833 -36.22507 -34.69271 -32.68596 -31.95427 -31.41188 -30.44687 -28.17573 -28.06241 -27.86496 -26.52538 -24.30274 -23.71534 -23.12100 -21.90506 -21.29593 -20.61129 -19.45366 -19.13054 -18.86108 -17.40333 -16.99465 -16.69337 -16.47518 -16.29367 -15.92268 -15.75882 -15.55156 -15.07098 -15.04234 -14.89089 -14.33269 -14.23232 -13.83863 -13.68273 -13.48945 -13.29600 -13.11933 -13.01006 -12.87791 -12.80165 -12.65948 -12.37077 -12.32668 -12.08899 -12.03149 -11.98069 -11.89482 -11.73887 -11.55281 -11.38492 -11.32722 -11.17821 -10.73107 -10.57312 -10.50009 -9.99134 -9.65350 -8.85259 -7.76077 -5.20004 0.60509 1.15037 1.46150 1.48120 1.56851 1.84064 2.36654 2.50596 2.51410 3.32822 3.42422 3.71344 3.78434 3.82217 4.01387 4.08603 4.12076 4.14303 4.22566 4.34370 4.44231 4.46505 4.50378 4.59227 4.70687 4.76669 4.81802 4.84616 4.85431 4.95662 4.98303 5.03027 5.10244 5.12496 5.14693 5.17938 5.20681 5.27612 5.33172 5.46710 5.47938 5.49801 5.55819 5.56706 5.72827 5.77195 5.86438 6.31536 6.34719 6.54318 6.78590 7.13678 7.46403 7.82164 8.45684 9.25520 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.002076 C = 0.001999 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.927855 B =13487.040622 C =14003.551833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.130 4.130 4 C -0.142 4.142 5 C 0.133 3.867 6 N -0.321 5.321 7 N -0.449 5.449 8 H 0.460 0.540 9 C 0.134 3.866 10 C -0.317 4.317 11 C 0.583 3.417 12 O -0.560 6.560 13 N -0.713 5.713 14 C 0.128 3.872 15 C -0.099 4.099 16 C -0.084 4.084 17 H 0.077 0.923 18 C -0.121 4.121 19 C 0.148 3.852 20 N -0.630 5.630 21 C -0.239 4.239 22 H 0.076 0.924 23 C -0.069 4.069 24 N -0.949 5.949 25 Si 0.979 3.021 26 H -0.288 1.288 27 H -0.291 1.291 28 H -0.270 1.270 29 C 0.134 3.866 30 H 0.044 0.956 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.054 0.946 34 H 0.068 0.932 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.062 0.938 38 H 0.047 0.953 39 H 0.234 0.766 40 H 0.413 0.587 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.075 0.925 44 H 0.098 0.902 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.071 0.929 48 H -0.019 1.019 49 H 0.247 0.753 50 H 0.027 0.973 51 H 0.010 0.990 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.518 20.354 6.674 28.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 C -0.187 4.187 4 C -0.200 4.200 5 C -0.035 4.035 6 N -0.143 5.143 7 N -0.155 5.155 8 H 0.308 0.692 9 C -0.021 4.021 10 C -0.332 4.332 11 C 0.372 3.628 12 O -0.441 6.441 13 N -0.365 5.365 14 C 0.004 3.996 15 C -0.137 4.137 16 C -0.103 4.103 17 H 0.095 0.905 18 C -0.159 4.159 19 C 0.023 3.977 20 N -0.356 5.356 21 C -0.368 4.368 22 H 0.094 0.906 23 C -0.261 4.261 24 N -0.599 5.599 25 Si 0.807 3.193 26 H -0.216 1.216 27 H -0.217 1.217 28 H -0.195 1.195 29 C 0.009 3.991 30 H 0.063 0.937 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.087 0.913 35 H 0.072 0.928 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.066 0.934 39 H 0.250 0.750 40 H 0.250 0.750 41 H 0.079 0.921 42 H 0.066 0.934 43 H 0.094 0.906 44 H 0.117 0.883 45 H 0.104 0.896 46 H 0.087 0.913 47 H 0.089 0.911 48 H -0.001 1.001 49 H 0.056 0.944 50 H 0.045 0.955 51 H 0.028 0.972 Dipole moment (debyes) X Y Z Total from point charges 19.536 21.533 6.441 29.779 hybrid contribution -1.277 -1.259 0.247 1.810 sum 18.258 20.274 6.687 28.092 Atomic orbital electron populations 1.22020 0.93244 1.03490 1.01330 1.18998 0.95821 0.94628 0.89428 1.21763 1.00898 0.93989 1.02063 1.22010 0.99671 1.02657 0.95637 1.22528 0.93817 0.92025 0.95137 1.77124 1.22340 1.13868 1.01003 1.46180 1.41680 1.06746 1.20902 0.69165 1.23784 0.90924 0.93374 0.93986 1.20292 1.15760 0.95684 1.01444 1.17502 0.79683 0.81814 0.83815 1.90651 1.46559 1.78834 1.28038 1.45666 1.52915 1.07219 1.30735 1.21228 0.95450 0.87853 0.95066 1.21618 1.01592 0.91404 0.99098 1.22010 0.93129 0.95173 1.00020 0.90489 1.22867 0.97405 0.95199 1.00452 1.21768 0.86673 0.92602 0.96662 1.44880 1.02727 1.02191 1.85774 1.19455 0.83093 0.92551 1.41744 0.90576 1.25627 1.02382 0.95242 1.02874 1.70066 1.33701 0.97577 1.58542 0.85067 0.79607 0.77171 0.77431 1.21550 1.21685 1.19493 1.21572 0.92822 0.87512 0.97201 0.93691 0.91932 0.90902 0.92683 0.91312 0.92832 0.90963 0.91935 0.93372 0.74992 0.75048 0.92058 0.93410 0.90616 0.88336 0.89641 0.91262 0.91145 1.00065 0.94359 0.95526 0.97210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.31 8.20 71.98 0.59 -2.72 16 2 C 0.01 0.29 0.75 -52.93 -0.04 0.25 16 3 C -0.13 -2.37 7.94 71.98 0.57 -1.79 16 4 C -0.14 -3.13 8.19 71.98 0.59 -2.54 16 5 C 0.13 2.82 5.64 43.51 0.25 3.07 16 6 N -0.32 -6.11 11.93 -46.68 -0.56 -6.67 16 7 N -0.45 -4.55 7.29 -56.31 -0.41 -4.96 16 8 H 0.46 1.13 8.96 -213.42 -1.91 -0.79 16 9 C 0.13 1.21 11.52 84.28 0.97 2.18 16 10 C -0.32 -5.82 5.89 -20.15 -0.12 -5.94 16 11 C 0.58 12.94 7.20 86.67 0.62 13.57 16 12 O -0.56 -16.38 10.41 -4.05 -0.04 -16.42 16 13 N -0.71 -12.15 5.54 -466.37 -2.59 -14.74 16 14 C 0.13 2.81 5.54 86.38 0.48 3.28 16 15 C -0.10 -2.02 4.73 30.59 0.14 -1.88 16 16 C -0.08 -2.56 2.95 -9.60 -0.03 -2.59 16 17 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 18 C -0.12 -4.13 6.54 31.99 0.21 -3.92 16 19 C 0.15 7.30 5.89 86.85 0.51 7.81 16 20 N -0.63 -33.09 3.39 -692.01 -2.35 -35.44 16 21 C -0.24 -13.79 10.27 84.03 0.86 -12.93 16 22 H 0.08 4.25 7.83 -2.91 -0.02 4.22 16 23 C -0.07 -3.99 5.49 84.86 0.47 -3.52 16 24 N -0.95 -57.28 10.09 21.65 0.22 -57.06 16 25 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 26 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 27 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 28 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 29 C 0.13 5.50 6.10 86.73 0.53 6.03 16 30 H 0.04 0.98 8.13 -2.38 -0.02 0.96 16 31 H 0.06 1.34 8.07 -2.39 -0.02 1.32 16 32 H 0.07 2.03 4.77 -2.39 -0.01 2.02 16 33 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.89 4.59 -2.39 -0.01 1.88 16 37 H 0.06 1.28 8.07 -2.39 -0.02 1.27 16 38 H 0.05 0.97 8.13 -2.38 -0.02 0.95 16 39 H 0.23 -0.37 7.49 -2.91 -0.02 -0.39 16 40 H 0.41 3.75 7.42 -92.71 -0.69 3.06 16 41 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.31 7.58 -2.39 -0.02 1.29 16 43 H 0.08 1.52 8.01 -2.39 -0.02 1.50 16 44 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.09 2.46 8.14 -2.39 -0.02 2.44 16 46 H 0.07 2.25 8.05 -2.39 -0.02 2.23 16 47 H 0.07 3.96 5.87 -2.39 -0.01 3.95 16 48 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.03 1.07 7.73 -2.39 -0.02 1.05 16 51 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 Total: -1.00 -78.83 394.65 1.25 -77.58 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: -1.66 Total: 10.87 kcal Atomic # 6 Polarization: -8.24 SS G_CDS: 6.61 Total: -1.63 kcal Atomic # 7 Polarization: -113.18 SS G_CDS: -5.68 Total: -118.86 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.04 Total: -16.42 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -78.83 1.25 -77.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714885401.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.236 kcal (2) G-P(sol) polarization free energy of solvation -78.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.579 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds