Wall clock time and date at job start Tue Mar 31 2020 19:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47308 * 2 1 4 4 C 1.50703 * 109.47032 * 120.00117 * 2 1 3 5 5 C 1.35360 * 126.38908 * 324.97215 * 4 2 1 6 6 C 1.41503 * 105.50590 * 180.02562 * 5 4 2 7 7 C 1.47704 * 126.51914 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00169 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00110 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.64758 * 0.05092 * 9 7 6 11 11 C 1.54325 * 107.27200 * 178.89951 * 10 9 7 12 12 C 1.55163 * 102.93978 * 337.80358 * 11 10 9 13 13 H 1.08992 * 111.04098 * 277.41456 * 12 11 10 14 14 C 1.53008 * 111.00044 * 153.57489 * 12 11 10 15 15 N 1.46498 * 109.46718 * 181.35191 * 14 12 11 16 16 C 1.46499 * 119.99985 * 90.00501 * 15 14 12 17 17 C 1.36939 * 119.99782 * 269.99829 * 15 14 12 18 18 H 1.08000 * 119.99892 * 334.66398 * 17 15 14 19 19 C 1.38818 * 119.99775 * 154.66743 * 17 15 14 20 20 N 1.31618 * 119.99903 * 4.06679 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 184.06413 * 19 17 15 22 22 H 1.48493 * 109.47192 * 60.00281 * 21 19 17 23 23 H 1.48503 * 109.46739 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47316 * 299.99485 * 21 19 17 25 25 C 1.47421 * 125.64886 * 180.02562 * 9 7 6 26 26 N 1.31811 * 106.96336 * 0.26364 * 6 5 4 27 27 N 1.28470 * 110.06962 * 359.55834 * 26 6 5 28 28 C 1.46507 * 124.88262 * 180.16066 * 27 26 6 29 29 H 1.09001 * 109.46797 * 300.00005 * 1 2 3 30 30 H 1.08996 * 109.46799 * 59.99888 * 1 2 3 31 31 H 1.09002 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46797 * 239.99995 * 2 1 3 33 33 H 1.08999 * 109.47171 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46827 * 300.00081 * 3 2 1 35 35 H 1.09001 * 109.47195 * 60.00239 * 3 2 1 36 36 H 1.08002 * 127.24291 * 0.02674 * 5 4 2 37 37 H 1.09000 * 109.88317 * 298.31876 * 10 9 7 38 38 H 1.09002 * 109.88176 * 59.32778 * 10 9 7 39 39 H 1.09002 * 110.71760 * 219.44281 * 11 10 9 40 40 H 1.08993 * 110.71852 * 96.16734 * 11 10 9 41 41 H 1.08993 * 109.46948 * 61.35069 * 14 12 11 42 42 H 1.08998 * 109.46893 * 301.35327 * 14 12 11 43 43 H 1.09002 * 109.46914 * 264.47794 * 16 15 14 44 44 H 1.08997 * 109.47267 * 144.48487 * 16 15 14 45 45 H 1.08989 * 109.47447 * 24.47894 * 16 15 14 46 46 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.36626 * 85.32941 * 25 9 7 48 48 H 1.09002 * 110.46245 * 323.05505 * 25 9 7 49 49 H 1.08997 * 109.46894 * 270.33719 * 28 27 26 50 50 H 1.09004 * 109.46919 * 30.33671 * 28 27 26 51 51 H 1.09001 * 109.47135 * 150.33800 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4588 -0.6961 2.4564 6 6 2.2892 -1.5008 3.2721 7 6 2.0900 -1.7998 4.7047 8 8 1.1339 -1.3362 5.2953 9 7 2.9677 -2.5876 5.3571 10 6 4.1616 -3.2114 4.7678 11 6 4.8717 -3.9944 5.8922 12 6 4.3479 -3.3052 7.1799 13 1 4.9144 -2.3998 7.3973 14 6 4.3802 -4.2677 8.3689 15 7 3.8497 -3.5941 9.5568 16 6 2.4173 -3.6591 9.8574 17 6 4.6928 -2.9039 10.3863 18 1 5.7393 -3.1666 10.4327 19 6 4.2022 -1.8666 11.1676 20 7 2.9136 -1.5984 11.1717 21 14 5.3709 -0.8515 12.2130 22 1 6.3763 -0.1969 11.3380 23 1 4.6035 0.1859 12.9480 24 1 6.0617 -1.7367 13.1848 25 6 2.8900 -2.9660 6.7798 26 7 3.2777 -1.9275 2.5117 27 7 3.1390 -1.4796 1.3157 28 6 4.0537 -1.7575 0.2055 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.5571 -0.1793 2.7502 37 1 3.8679 -3.8931 3.9697 38 1 4.8250 -2.4421 4.3726 39 1 5.9536 -3.8893 5.8114 40 1 4.5826 -5.0451 5.8723 41 1 5.4077 -4.5792 8.5563 42 1 3.7703 -5.1428 8.1446 43 1 1.9227 -2.7715 9.4629 44 1 2.2743 -3.7050 10.9370 45 1 1.9893 -4.5489 9.3960 46 1 2.5709 -0.8734 11.7173 47 1 2.2490 -3.8385 6.9058 48 1 2.5172 -2.1330 7.3759 49 1 4.8363 -0.9992 0.1810 50 1 4.5044 -2.7404 0.3435 51 1 3.5011 -1.7399 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714890657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:34 Heat of formation + Delta-G solvation = 67.262155 kcal Electronic energy + Delta-G solvation = -29486.019380 eV Core-core repulsion = 25616.034108 eV Total energy + Delta-G solvation = -3869.985272 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.09 seconds Orbital eigenvalues (eV) -42.82764 -39.46415 -37.29153 -36.10837 -35.20554 -33.64181 -32.11397 -30.53913 -29.77526 -28.60386 -27.70162 -27.55871 -26.11659 -25.31778 -23.56881 -23.01889 -21.77846 -20.98450 -20.20714 -19.57843 -18.72128 -17.23050 -16.59592 -16.53331 -16.48758 -15.73157 -15.05638 -14.83886 -14.67719 -14.37427 -14.06588 -13.97231 -13.51417 -13.47479 -13.43119 -13.03114 -12.90192 -12.78326 -12.60474 -12.51227 -12.21936 -12.12728 -11.95088 -11.65373 -11.60929 -11.30486 -11.26364 -10.95163 -10.78900 -10.64470 -10.59047 -10.34557 -10.11237 -9.98572 -9.83453 -9.78605 -9.66856 -9.17862 -9.03061 -8.41720 -8.20956 -6.64634 -5.64089 -3.10778 1.61293 2.05235 2.28506 3.32626 3.44096 3.49471 3.50278 3.64359 4.09232 4.19046 4.40963 4.55806 4.62843 4.70052 4.75069 4.89251 5.02585 5.04317 5.11045 5.23064 5.26537 5.33097 5.38809 5.45273 5.47785 5.54982 5.65808 5.67749 5.70679 5.83162 5.87482 5.91460 5.98670 6.13150 6.15169 6.29967 6.31648 6.37128 6.48998 6.60411 6.63276 6.78832 6.82014 6.93888 7.07731 7.59478 7.78620 7.85732 7.91569 7.97463 8.49738 8.51694 9.35062 9.96459 10.46499 11.40426 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.002554 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.350399 B =10961.028687 C =11392.735269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.022 4.022 3 C -0.144 4.144 4 C 0.013 3.987 5 C -0.174 4.174 6 C -0.003 4.003 7 C 0.609 3.391 8 O -0.534 6.534 9 N -0.605 5.605 10 C 0.115 3.885 11 C -0.132 4.132 12 C -0.116 4.116 13 H 0.083 0.917 14 C 0.165 3.835 15 N -0.605 5.605 16 C 0.165 3.835 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.006 3.994 20 N -0.906 5.906 21 Si 0.902 3.098 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.285 1.285 25 C 0.123 3.877 26 N -0.258 5.258 27 N -0.286 5.286 28 C 0.087 3.913 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.053 0.947 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.160 0.840 37 H 0.064 0.936 38 H 0.066 0.934 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.048 0.952 42 H 0.039 0.961 43 H 0.027 0.973 44 H 0.051 0.949 45 H -0.010 1.010 46 H 0.253 0.747 47 H 0.062 0.938 48 H 0.086 0.914 49 H 0.083 0.917 50 H 0.096 0.904 51 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.521 -0.329 -27.923 27.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.042 4.042 3 C -0.202 4.202 4 C -0.111 4.111 5 C -0.202 4.202 6 C -0.163 4.163 7 C 0.396 3.604 8 O -0.409 6.409 9 N -0.338 5.338 10 C -0.008 4.008 11 C -0.170 4.170 12 C -0.139 4.139 13 H 0.102 0.898 14 C 0.036 3.964 15 N -0.328 5.328 16 C 0.021 3.979 17 C -0.385 4.385 18 H 0.085 0.915 19 C -0.192 4.192 20 N -0.551 5.551 21 Si 0.732 3.268 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.211 1.211 25 C 0.002 3.998 26 N -0.093 5.093 27 N -0.074 5.074 28 C -0.054 4.054 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.177 0.823 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.046 0.954 44 H 0.070 0.930 45 H 0.008 0.992 46 H 0.063 0.937 47 H 0.080 0.920 48 H 0.105 0.895 49 H 0.101 0.899 50 H 0.115 0.885 51 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.892 -0.605 -27.565 27.586 hybrid contribution 0.067 1.196 0.401 1.263 sum 0.959 0.591 -27.164 27.188 Atomic orbital electron populations 1.21833 0.93034 1.02612 1.02680 1.19655 0.96799 0.95391 0.92360 1.21853 1.01027 0.94604 1.02739 1.21324 0.91153 1.00500 0.98104 1.21451 1.03071 1.04578 0.91058 1.21919 0.95490 1.03733 0.95201 1.16511 0.82071 0.78429 0.83421 1.90813 1.30263 1.52618 1.67190 1.48446 1.25212 1.47824 1.12292 1.21966 0.86552 0.96495 0.95812 1.22747 1.00002 0.99399 0.94892 1.23216 0.94300 1.01375 0.94968 0.89833 1.20765 0.97673 0.92421 0.85505 1.43937 1.04868 1.60929 1.23022 1.20914 0.82766 0.94638 0.99585 1.19128 0.91912 1.09524 1.17946 0.91523 1.25162 0.96012 0.97486 1.00572 1.70071 1.10989 1.31494 1.42567 0.86386 0.80259 0.80271 0.79921 1.21062 1.21670 1.21116 1.22331 0.97924 1.00780 0.78809 1.73687 1.23422 1.21012 0.91192 1.45339 1.19270 1.34967 1.07818 1.22114 0.92926 1.04223 0.86144 0.91607 0.91815 0.92162 0.90341 0.92754 0.91745 0.91718 0.82273 0.91814 0.91557 0.90563 0.91014 0.93345 0.94296 0.95431 0.93013 0.99174 0.93681 0.91996 0.89548 0.89851 0.88505 0.88929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.78 37.16 0.33 -0.58 16 2 C -0.02 -0.15 3.10 -91.77 -0.28 -0.43 16 3 C -0.14 -0.89 9.18 37.16 0.34 -0.55 16 4 C 0.01 0.14 5.84 -82.21 -0.48 -0.34 16 5 C -0.17 -2.36 9.96 -39.36 -0.39 -2.76 16 6 C 0.00 -0.05 6.98 -82.77 -0.58 -0.63 16 7 C 0.61 11.83 7.86 -12.39 -0.10 11.73 16 8 O -0.53 -12.12 17.18 5.30 0.09 -12.03 16 9 N -0.60 -11.09 3.33 -171.67 -0.57 -11.66 16 10 C 0.11 1.70 5.55 -3.06 -0.02 1.68 16 11 C -0.13 -1.87 6.42 -24.89 -0.16 -2.03 16 12 C -0.12 -2.17 3.29 -88.45 -0.29 -2.47 16 13 H 0.08 1.77 8.14 -51.93 -0.42 1.35 16 14 C 0.16 3.33 5.22 -4.04 -0.02 3.31 16 15 N -0.60 -15.34 2.85 -181.12 -0.52 -15.86 16 16 C 0.17 4.23 8.15 59.85 0.49 4.72 16 17 C -0.26 -7.08 9.67 -15.06 -0.15 -7.22 16 18 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 19 C 0.01 0.17 5.38 -17.43 -0.09 0.07 16 20 N -0.91 -27.05 10.12 55.49 0.56 -26.49 16 21 Si 0.90 22.32 29.56 -169.99 -5.02 17.30 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 C 0.12 2.46 5.37 -2.52 -0.01 2.45 16 26 N -0.26 -3.56 9.50 33.42 0.32 -3.24 16 27 N -0.29 -3.00 3.70 -63.85 -0.24 -3.23 16 28 C 0.09 0.46 11.11 59.85 0.66 1.13 16 29 H 0.06 0.47 7.35 -51.93 -0.38 0.08 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.37 6.86 -51.93 -0.36 0.02 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.16 2.08 7.47 -52.49 -0.39 1.68 16 37 H 0.06 0.88 7.78 -51.93 -0.40 0.47 16 38 H 0.07 0.97 7.64 -51.93 -0.40 0.58 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.07 0.93 8.04 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.04 -51.93 -0.42 0.52 16 42 H 0.04 0.73 7.81 -51.93 -0.41 0.32 16 43 H 0.03 0.76 6.88 -51.93 -0.36 0.41 16 44 H 0.05 1.43 7.03 -51.93 -0.37 1.07 16 45 H -0.01 -0.23 7.83 -51.94 -0.41 -0.64 16 46 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 47 H 0.06 1.23 8.00 -51.93 -0.42 0.81 16 48 H 0.09 2.09 7.54 -51.93 -0.39 1.69 16 49 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 51 H 0.09 0.26 6.88 -51.93 -0.36 -0.10 16 LS Contribution 403.96 15.07 6.09 6.09 Total: -1.00 -34.77 403.96 -8.86 -43.62 By element: Atomic # 1 Polarization: 6.23 SS G_CDS: -8.82 Total: -2.58 kcal Atomic # 6 Polarization: 8.83 SS G_CDS: -0.75 Total: 8.08 kcal Atomic # 7 Polarization: -60.04 SS G_CDS: -0.44 Total: -60.48 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.09 Total: -12.03 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.77 -8.86 -43.62 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714890657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.886 kcal (2) G-P(sol) polarization free energy of solvation -34.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.858 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.09 seconds