Wall clock time and date at job start Tue Mar 31 2020 19:29:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47308 * 2 1 4 4 C 1.50703 * 109.47032 * 120.00117 * 2 1 3 5 5 C 1.35360 * 126.38908 * 324.97215 * 4 2 1 6 6 C 1.41503 * 105.50590 * 180.02562 * 5 4 2 7 7 C 1.47704 * 126.51914 * 179.97438 * 6 5 4 8 8 O 1.21573 * 120.00169 * 0.02562 * 7 6 5 9 9 N 1.34779 * 120.00110 * 179.97438 * 7 6 5 10 10 C 1.47020 * 125.64758 * 0.05092 * 9 7 6 11 11 C 1.54325 * 107.27200 * 178.89951 * 10 9 7 12 12 C 1.55163 * 102.93978 * 337.80358 * 11 10 9 13 13 H 1.08992 * 111.04098 * 277.41456 * 12 11 10 14 14 C 1.53008 * 111.00044 * 153.57489 * 12 11 10 15 15 N 1.46498 * 109.46718 * 181.35191 * 14 12 11 16 16 C 1.46499 * 119.99985 * 90.00501 * 15 14 12 17 17 C 1.36939 * 119.99782 * 269.99829 * 15 14 12 18 18 H 1.08000 * 119.99892 * 334.66398 * 17 15 14 19 19 C 1.38818 * 119.99775 * 154.66743 * 17 15 14 20 20 N 1.31618 * 119.99903 * 4.06679 * 19 17 15 21 21 Si 1.86800 * 119.99547 * 184.06413 * 19 17 15 22 22 H 1.48493 * 109.47192 * 60.00281 * 21 19 17 23 23 H 1.48503 * 109.46739 * 180.02562 * 21 19 17 24 24 H 1.48501 * 109.47316 * 299.99485 * 21 19 17 25 25 C 1.47421 * 125.64886 * 180.02562 * 9 7 6 26 26 N 1.31811 * 106.96336 * 0.26364 * 6 5 4 27 27 N 1.28470 * 110.06962 * 359.55834 * 26 6 5 28 28 C 1.46507 * 124.88262 * 180.16066 * 27 26 6 29 29 H 1.09001 * 109.46797 * 300.00005 * 1 2 3 30 30 H 1.08996 * 109.46799 * 59.99888 * 1 2 3 31 31 H 1.09002 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46797 * 239.99995 * 2 1 3 33 33 H 1.08999 * 109.47171 * 180.02562 * 3 2 1 34 34 H 1.08997 * 109.46827 * 300.00081 * 3 2 1 35 35 H 1.09001 * 109.47195 * 60.00239 * 3 2 1 36 36 H 1.08002 * 127.24291 * 0.02674 * 5 4 2 37 37 H 1.09000 * 109.88317 * 298.31876 * 10 9 7 38 38 H 1.09002 * 109.88176 * 59.32778 * 10 9 7 39 39 H 1.09002 * 110.71760 * 219.44281 * 11 10 9 40 40 H 1.08993 * 110.71852 * 96.16734 * 11 10 9 41 41 H 1.08993 * 109.46948 * 61.35069 * 14 12 11 42 42 H 1.08998 * 109.46893 * 301.35327 * 14 12 11 43 43 H 1.09002 * 109.46914 * 264.47794 * 16 15 14 44 44 H 1.08997 * 109.47267 * 144.48487 * 16 15 14 45 45 H 1.08989 * 109.47447 * 24.47894 * 16 15 14 46 46 H 0.96996 * 119.99876 * 180.02562 * 20 19 17 47 47 H 1.09001 * 110.36626 * 85.32941 * 25 9 7 48 48 H 1.09002 * 110.46245 * 323.05505 * 25 9 7 49 49 H 1.08997 * 109.46894 * 270.33719 * 28 27 26 50 50 H 1.09004 * 109.46919 * 30.33671 * 28 27 26 51 51 H 1.09001 * 109.47135 * 150.33800 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7104 1.2305 5 6 1.4588 -0.6961 2.4564 6 6 2.2892 -1.5008 3.2721 7 6 2.0900 -1.7998 4.7047 8 8 1.1339 -1.3362 5.2953 9 7 2.9677 -2.5876 5.3571 10 6 4.1616 -3.2114 4.7678 11 6 4.8717 -3.9944 5.8922 12 6 4.3479 -3.3052 7.1799 13 1 4.9144 -2.3998 7.3973 14 6 4.3802 -4.2677 8.3689 15 7 3.8497 -3.5941 9.5568 16 6 2.4173 -3.6591 9.8574 17 6 4.6928 -2.9039 10.3863 18 1 5.7393 -3.1666 10.4327 19 6 4.2022 -1.8666 11.1676 20 7 2.9136 -1.5984 11.1717 21 14 5.3709 -0.8515 12.2130 22 1 6.3763 -0.1969 11.3380 23 1 4.6035 0.1859 12.9480 24 1 6.0617 -1.7367 13.1848 25 6 2.8900 -2.9660 6.7798 26 7 3.2777 -1.9275 2.5117 27 7 3.1390 -1.4796 1.3157 28 6 4.0537 -1.7575 0.2055 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1301 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 0.5571 -0.1793 2.7502 37 1 3.8679 -3.8931 3.9697 38 1 4.8250 -2.4421 4.3726 39 1 5.9536 -3.8893 5.8114 40 1 4.5826 -5.0451 5.8723 41 1 5.4077 -4.5792 8.5563 42 1 3.7703 -5.1428 8.1446 43 1 1.9227 -2.7715 9.4629 44 1 2.2743 -3.7050 10.9370 45 1 1.9893 -4.5489 9.3960 46 1 2.5709 -0.8734 11.7173 47 1 2.2490 -3.8385 6.9058 48 1 2.5172 -2.1330 7.3759 49 1 4.8363 -0.9992 0.1810 50 1 4.5044 -2.7404 0.3435 51 1 3.5011 -1.7399 -0.7338 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001714890657.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:27 Heat of formation + Delta-G solvation = 45.391584 kcal Electronic energy + Delta-G solvation = -29486.967759 eV Core-core repulsion = 25616.034108 eV Total energy + Delta-G solvation = -3870.933651 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 3.57 seconds Orbital eigenvalues (eV) -43.77413 -40.93709 -38.87363 -37.10638 -36.70781 -34.54596 -33.84686 -32.30310 -30.69337 -30.02865 -28.78231 -28.03998 -28.00925 -27.00365 -24.96326 -23.82419 -22.98476 -22.71597 -21.17401 -21.11078 -19.89508 -18.68307 -18.15621 -17.71366 -17.53520 -17.08331 -16.71180 -16.32289 -15.78817 -15.45120 -15.40458 -15.00120 -14.91912 -14.70764 -14.49277 -14.28338 -14.01991 -13.95707 -13.74702 -13.51455 -13.37436 -13.19516 -13.09573 -13.00329 -12.79140 -12.62917 -12.56415 -12.41608 -12.14880 -12.11261 -12.01918 -11.82582 -11.78742 -11.67750 -11.55489 -11.44065 -11.28612 -10.58488 -10.17343 -9.96265 -9.67088 -8.73634 -7.81038 -5.29038 0.46596 1.06632 1.44725 1.47903 1.50325 1.53950 1.99070 2.27562 2.51286 3.18276 3.33443 3.49171 3.56010 3.74967 3.79701 3.91657 4.04382 4.12937 4.17817 4.31367 4.32995 4.40337 4.46479 4.51494 4.59926 4.66021 4.70056 4.70218 4.73438 4.81275 4.85785 4.89520 4.95718 4.97193 4.99745 5.02731 5.05330 5.13666 5.20699 5.29524 5.35921 5.38043 5.42442 5.42657 5.50531 5.66275 5.81723 5.84992 6.37295 6.43950 6.78993 7.06406 7.19221 7.91163 8.35863 9.22696 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.017758 B = 0.002554 C = 0.002457 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.350399 B =10961.028687 C =11392.735269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.018 4.018 3 C -0.143 4.143 4 C 0.034 3.966 5 C -0.201 4.201 6 C -0.039 4.039 7 C 0.600 3.400 8 O -0.586 6.586 9 N -0.608 5.608 10 C 0.118 3.882 11 C -0.113 4.113 12 C -0.108 4.108 13 H 0.053 0.947 14 C 0.162 3.838 15 N -0.622 5.622 16 C 0.184 3.816 17 C -0.258 4.258 18 H 0.077 0.923 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.967 3.033 22 H -0.278 1.278 23 H -0.300 1.300 24 H -0.272 1.272 25 C 0.130 3.870 26 N -0.259 5.259 27 N -0.273 5.273 28 C 0.071 3.929 29 H 0.048 0.952 30 H 0.087 0.913 31 H 0.054 0.946 32 H 0.113 0.887 33 H 0.057 0.943 34 H 0.087 0.913 35 H 0.043 0.957 36 H 0.150 0.850 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.103 0.897 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.062 0.938 43 H -0.007 1.007 44 H 0.022 0.978 45 H 0.020 0.980 46 H 0.244 0.756 47 H 0.063 0.937 48 H 0.030 0.970 49 H 0.101 0.899 50 H 0.107 0.893 51 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.187 -1.559 -31.923 32.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.201 4.201 4 C -0.091 4.091 5 C -0.229 4.229 6 C -0.197 4.197 7 C 0.388 3.612 8 O -0.466 6.466 9 N -0.340 5.340 10 C -0.004 4.004 11 C -0.151 4.151 12 C -0.130 4.130 13 H 0.071 0.929 14 C 0.036 3.964 15 N -0.345 5.345 16 C 0.039 3.961 17 C -0.388 4.388 18 H 0.095 0.905 19 C -0.251 4.251 20 N -0.588 5.588 21 Si 0.795 3.205 22 H -0.204 1.204 23 H -0.226 1.226 24 H -0.197 1.197 25 C 0.008 3.992 26 N -0.096 5.096 27 N -0.062 5.062 28 C -0.067 4.067 29 H 0.068 0.932 30 H 0.105 0.895 31 H 0.073 0.927 32 H 0.131 0.869 33 H 0.076 0.924 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.168 0.832 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.122 0.878 40 H 0.115 0.885 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.011 0.989 44 H 0.041 0.959 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.081 0.919 48 H 0.049 0.951 49 H 0.119 0.881 50 H 0.125 0.875 51 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 3.628 -1.883 -31.610 31.873 hybrid contribution -0.734 1.541 1.482 2.260 sum 2.894 -0.342 -30.128 30.269 Atomic orbital electron populations 1.21853 0.92978 1.02384 1.03070 1.19856 0.96797 0.95588 0.91527 1.21851 1.01224 0.94066 1.02933 1.21787 0.90130 0.99070 0.98163 1.21545 1.03481 1.05426 0.92480 1.21482 0.97817 1.06514 0.93853 1.17111 0.81408 0.77737 0.84922 1.90759 1.32437 1.54613 1.68762 1.48562 1.26146 1.47751 1.11535 1.22144 0.85113 0.96785 0.96361 1.22737 1.01426 0.99940 0.91029 1.22944 0.92944 1.00276 0.96865 0.92860 1.20978 0.98709 0.92736 0.83983 1.44183 1.04354 1.61095 1.24837 1.20554 0.83522 0.94418 0.97639 1.19534 0.92520 1.09125 1.17610 0.90483 1.25960 0.97395 0.99032 1.02689 1.70290 1.12783 1.31924 1.43826 0.85345 0.78187 0.78519 0.78446 1.20397 1.22630 1.19743 1.22065 0.98926 0.98525 0.79664 1.73575 1.22503 1.21193 0.92352 1.45893 1.19429 1.33179 1.07687 1.22676 0.93120 1.05461 0.85459 0.93244 0.89466 0.92723 0.86940 0.92410 0.89408 0.93745 0.83233 0.89907 0.91179 0.87805 0.88534 0.91661 0.92002 0.98853 0.95892 0.96130 0.94649 0.91869 0.95098 0.88051 0.87458 0.85544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.57 8.78 71.98 0.63 -0.94 16 2 C -0.02 -0.18 3.10 -11.54 -0.04 -0.22 16 3 C -0.14 -1.37 9.18 71.98 0.66 -0.71 16 4 C 0.03 0.64 5.84 41.40 0.24 0.88 16 5 C -0.20 -5.67 9.96 22.41 0.22 -5.45 16 6 C -0.04 -1.30 6.98 42.45 0.30 -1.00 16 7 C 0.60 24.82 7.86 86.74 0.68 25.50 16 8 O -0.59 -29.22 17.18 -3.95 -0.07 -29.29 16 9 N -0.61 -23.04 3.33 -815.30 -2.71 -25.75 16 10 C 0.12 3.29 5.55 86.73 0.48 3.77 16 11 C -0.11 -2.87 6.42 31.79 0.20 -2.66 16 12 C -0.11 -4.01 3.29 -9.39 -0.03 -4.04 16 13 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 14 C 0.16 6.36 5.22 86.38 0.45 6.81 16 15 N -0.62 -31.97 2.85 -726.95 -2.07 -34.05 16 16 C 0.18 9.79 8.15 127.77 1.04 10.83 16 17 C -0.26 -14.42 9.67 84.03 0.81 -13.61 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.06 -3.30 5.38 84.86 0.46 -2.84 16 20 N -0.94 -59.04 10.12 21.65 0.22 -58.82 16 21 Si 0.97 46.93 29.56 68.60 2.03 48.95 16 22 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 23 H -0.30 -14.86 7.11 99.48 0.71 -14.16 16 24 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 25 C 0.13 5.49 5.37 86.86 0.47 5.96 16 26 N -0.26 -6.80 9.50 -48.18 -0.46 -7.26 16 27 N -0.27 -5.01 3.70 -355.91 -1.32 -6.32 16 28 C 0.07 0.44 11.11 127.77 1.42 1.86 16 29 H 0.05 0.70 7.35 -2.39 -0.02 0.68 16 30 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 32 H 0.11 0.47 6.86 -2.39 -0.02 0.45 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 35 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.15 4.32 7.47 -2.91 -0.02 4.30 16 37 H 0.08 2.04 7.78 -2.39 -0.02 2.03 16 38 H 0.07 1.93 7.64 -2.39 -0.02 1.91 16 39 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 40 H 0.10 2.05 8.04 -2.39 -0.02 2.04 16 41 H 0.07 2.36 8.04 -2.39 -0.02 2.34 16 42 H 0.06 2.15 7.81 -2.39 -0.02 2.14 16 43 H -0.01 -0.41 6.88 -2.39 -0.02 -0.43 16 44 H 0.02 1.31 7.03 -2.39 -0.02 1.30 16 45 H 0.02 0.94 7.83 -2.39 -0.02 0.92 16 46 H 0.24 15.07 8.31 -92.71 -0.77 14.30 16 47 H 0.06 2.59 8.00 -2.39 -0.02 2.57 16 48 H 0.03 1.62 7.54 -2.39 -0.02 1.61 16 49 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 50 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 51 H 0.13 -0.03 6.88 -2.39 -0.02 -0.05 16 Total: -1.00 -83.11 403.96 4.52 -78.59 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: 0.90 Total: 9.80 kcal Atomic # 6 Polarization: 16.13 SS G_CDS: 8.00 Total: 24.13 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -6.34 Total: -132.20 kcal Atomic # 8 Polarization: -29.22 SS G_CDS: -0.07 Total: -29.29 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.95 kcal Total: -83.11 4.52 -78.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714890657.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.987 kcal (2) G-P(sol) polarization free energy of solvation -83.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.57 seconds