Wall clock time and date at job start Tue Mar 31 2020 19:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47324 * 2 1 4 4 C 1.50699 * 109.47266 * 180.02562 * 3 2 1 5 5 C 1.35360 * 126.38823 * 84.99869 * 4 3 2 6 6 C 1.41495 * 105.50785 * 179.97438 * 5 4 3 7 7 C 1.47709 * 126.52130 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99990 * 352.88082 * 7 6 5 9 9 N 1.34783 * 119.99937 * 172.88374 * 7 6 5 10 10 C 1.46922 * 120.63376 * 353.01142 * 9 7 6 11 11 C 1.53182 * 108.89754 * 233.51784 * 10 9 7 12 12 C 1.53074 * 109.29468 * 305.57991 * 11 10 9 13 13 C 1.53042 * 109.65957 * 61.14941 * 12 11 10 14 14 H 1.09005 * 109.49407 * 58.65755 * 13 12 11 15 15 C 1.53002 * 109.49785 * 178.74675 * 13 12 11 16 16 H 1.09002 * 109.46851 * 59.83897 * 15 13 12 17 17 C 1.52998 * 109.47395 * 299.84323 * 15 13 12 18 18 N 1.46500 * 109.46939 * 179.83628 * 15 13 12 19 19 C 1.36939 * 119.99852 * 204.99937 * 18 15 13 20 20 H 1.07994 * 119.99807 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99729 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99675 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47304 * 90.00437 * 23 21 19 25 25 H 1.48505 * 109.47433 * 210.00229 * 23 21 19 26 26 H 1.48499 * 109.47281 * 330.00236 * 23 21 19 27 27 C 1.46928 * 120.62949 * 172.99145 * 9 7 6 28 28 N 1.31811 * 106.96577 * 0.24135 * 6 5 4 29 29 N 1.28475 * 110.06947 * 359.59539 * 28 6 5 30 30 H 0.96997 * 124.88656 * 180.20677 * 29 28 6 31 31 H 1.08997 * 109.47594 * 59.99301 * 1 2 3 32 32 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47051 * 299.99872 * 1 2 3 34 34 H 1.09004 * 109.47051 * 240.00128 * 2 1 3 35 35 H 1.09003 * 109.47743 * 120.00246 * 2 1 3 36 36 H 1.08997 * 109.47127 * 60.00412 * 3 2 1 37 37 H 1.09001 * 109.46975 * 300.00205 * 3 2 1 38 38 H 1.08007 * 127.24885 * 359.95866 * 5 4 3 39 39 H 1.09004 * 109.58655 * 353.38101 * 10 9 7 40 40 H 1.09006 * 109.58489 * 113.65765 * 10 9 7 41 41 H 1.09001 * 109.49863 * 65.38819 * 11 10 9 42 42 H 1.09000 * 109.50266 * 185.48511 * 11 10 9 43 43 H 1.09006 * 109.34728 * 301.12584 * 12 11 10 44 44 H 1.08997 * 109.45307 * 181.24164 * 12 11 10 45 45 H 1.09002 * 109.46773 * 299.99621 * 17 15 13 46 46 H 1.08998 * 109.47115 * 59.99510 * 17 15 13 47 47 H 1.08994 * 109.47435 * 180.02562 * 17 15 13 48 48 H 0.97000 * 120.00075 * 25.01252 * 18 15 13 49 49 H 0.97006 * 119.99385 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.58919 * 246.20193 * 27 9 7 51 51 H 1.09004 * 109.58578 * 6.48632 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3495 1.3476 -1.0865 6 6 5.6718 1.3921 -0.5847 7 6 6.9158 1.3225 -1.3780 8 8 6.8646 1.0866 -2.5695 9 7 8.1078 1.5206 -0.7808 10 6 8.1799 1.9558 0.6206 11 6 9.0529 3.2117 0.7057 12 6 10.4123 2.9274 0.0621 13 6 10.2186 2.5689 -1.4131 14 1 9.7194 3.3918 -1.9249 15 6 11.5817 2.3160 -2.0605 16 1 12.0807 1.4941 -1.5471 17 6 12.4388 3.5789 -1.9545 18 7 11.3953 1.9692 -3.4716 19 6 12.3407 1.2238 -4.1241 20 1 13.2235 0.8913 -3.5983 21 6 12.1644 0.8956 -5.4612 22 7 13.0729 0.1787 -6.0882 23 14 10.6370 1.4701 -6.3704 24 1 10.8972 2.7956 -6.9871 25 1 10.2942 0.4893 -7.4314 26 1 9.5053 1.5820 -5.4155 27 6 9.3599 1.3048 -1.5188 28 7 5.5824 1.5016 0.7258 29 7 4.3485 1.5376 1.0820 30 1 4.0374 1.6182 1.9972 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 4.0448 1.2568 -2.1187 39 1 7.1778 2.1820 0.9850 40 1 8.6192 1.1637 1.2271 41 1 8.5656 4.0301 0.1757 42 1 9.1933 3.4871 1.7510 43 1 10.8893 2.0943 0.5785 44 1 11.0435 3.8125 0.1409 45 1 11.9398 4.4008 -2.4679 46 1 12.5774 3.8369 -0.9046 47 1 13.4097 3.3989 -2.4161 48 1 10.6022 2.2676 -3.9437 49 1 12.9494 -0.0509 -7.0226 50 1 9.8976 0.4606 -1.0873 51 1 9.1362 1.0990 -2.5656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715453042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:45 Heat of formation + Delta-G solvation = 43.284932 kcal Electronic energy + Delta-G solvation = -29398.996248 eV Core-core repulsion = 25527.971246 eV Total energy + Delta-G solvation = -3871.025002 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.98619 -39.85283 -37.70297 -35.85215 -35.45510 -33.01411 -32.05026 -31.72284 -31.32712 -30.05020 -28.54113 -26.92796 -25.74432 -24.37681 -22.91274 -22.71506 -22.33933 -21.28396 -20.74122 -19.70579 -18.79375 -18.09607 -17.49683 -16.64856 -16.06368 -15.69343 -15.54560 -14.94414 -14.76544 -14.42099 -14.27666 -14.02521 -13.92528 -13.86470 -13.45824 -13.27421 -12.92188 -12.85031 -12.73652 -12.68820 -12.33549 -12.16921 -11.98460 -11.79016 -11.54775 -11.37241 -11.19442 -11.04239 -10.90674 -10.74580 -10.67105 -10.33657 -10.19808 -10.02514 -9.92440 -9.69507 -9.55985 -9.45295 -9.20208 -8.83341 -8.38988 -7.15661 -5.66519 -3.01355 1.39443 1.87834 2.51500 3.14455 3.43083 3.50898 3.58333 3.61296 4.10509 4.25007 4.39934 4.53214 4.72199 4.74592 4.86941 4.93232 5.03505 5.04804 5.11466 5.19317 5.27505 5.28585 5.36807 5.43150 5.49888 5.56604 5.61041 5.69237 5.70440 5.73672 5.78324 5.80387 5.87377 5.99436 6.02168 6.13985 6.16033 6.20767 6.24569 6.40678 6.43744 6.53258 6.62360 6.66351 6.85098 6.91219 7.09464 7.49814 7.67822 8.09688 8.31590 8.52769 9.31831 10.05100 10.24802 11.51755 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002877 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.207468 B = 9730.290706 C =11353.163389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.050 4.050 4 C 0.018 3.982 5 C -0.175 4.175 6 C 0.003 3.997 7 C 0.594 3.406 8 O -0.526 6.526 9 N -0.598 5.598 10 C 0.087 3.913 11 C -0.132 4.132 12 C -0.114 4.114 13 C -0.106 4.106 14 H 0.069 0.931 15 C 0.185 3.815 16 H 0.056 0.944 17 C -0.164 4.164 18 N -0.749 5.749 19 C -0.239 4.239 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.936 5.936 23 Si 0.877 3.123 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.270 1.270 27 C 0.121 3.879 28 N -0.259 5.259 29 N -0.386 5.386 30 H 0.442 0.558 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.071 0.929 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.162 0.838 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.069 0.931 45 H 0.044 0.956 46 H 0.042 0.958 47 H 0.057 0.943 48 H 0.362 0.638 49 H 0.258 0.742 50 H 0.070 0.930 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.810 4.969 21.316 32.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.089 4.089 4 C -0.108 4.108 5 C -0.203 4.203 6 C -0.158 4.158 7 C 0.380 3.620 8 O -0.400 6.400 9 N -0.330 5.330 10 C -0.036 4.036 11 C -0.171 4.171 12 C -0.152 4.152 13 C -0.126 4.126 14 H 0.087 0.913 15 C 0.075 3.925 16 H 0.074 0.926 17 C -0.224 4.224 18 N -0.392 5.392 19 C -0.369 4.369 20 H 0.107 0.893 21 C -0.190 4.190 22 N -0.584 5.584 23 Si 0.708 3.292 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.196 1.196 27 C -0.001 4.001 28 N -0.095 5.095 29 N -0.099 5.099 30 H 0.286 0.714 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.180 0.820 39 H 0.137 0.863 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.089 0.911 43 H 0.083 0.917 44 H 0.088 0.912 45 H 0.063 0.937 46 H 0.060 0.940 47 H 0.076 0.924 48 H 0.195 0.805 49 H 0.068 0.932 50 H 0.088 0.912 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -22.956 4.747 21.503 31.810 hybrid contribution -1.520 0.399 -0.924 1.823 sum -24.475 5.146 20.579 32.388 Atomic orbital electron populations 1.21779 0.95179 1.02106 1.01995 1.21550 0.96040 0.95421 1.02980 1.20232 0.86261 0.98370 1.04066 1.21410 0.94971 1.07088 0.87323 1.21531 0.90424 1.08384 0.99929 1.22047 0.95347 1.08697 0.89687 1.17033 0.81561 0.77447 0.85979 1.90845 1.86075 1.49151 1.13974 1.48004 1.05665 1.66123 1.13193 1.22382 1.03511 0.96139 0.81576 1.21923 0.96571 0.97790 1.00783 1.21631 0.96422 1.01923 0.95271 1.21795 0.97427 0.97620 0.95740 0.91271 1.20152 0.91448 0.95205 0.85683 0.92626 1.22442 1.01449 0.99378 0.99172 1.42834 1.24446 1.64682 1.07213 1.19038 1.00151 1.24385 0.93322 0.89267 1.24636 0.97712 1.00055 0.96645 1.69709 1.35025 1.42878 1.10785 0.86632 0.84411 0.78082 0.80111 1.21313 1.21827 1.19574 1.21746 0.82264 0.97229 0.98812 1.73435 1.00734 1.20313 1.15000 1.43478 1.03223 1.53402 1.09776 0.71401 0.92339 0.92379 0.92707 0.91025 0.91985 0.90625 0.88954 0.82037 0.86283 0.91818 0.91983 0.91083 0.91734 0.91219 0.93732 0.93956 0.92415 0.80546 0.93200 0.91185 0.88056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.91 37.15 0.37 -0.24 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 3 C -0.05 -0.24 5.77 -27.88 -0.16 -0.40 16 4 C 0.02 0.14 6.48 -82.21 -0.53 -0.39 16 5 C -0.17 -2.03 10.74 -39.37 -0.42 -2.45 16 6 C 0.00 0.04 6.82 -82.77 -0.56 -0.53 16 7 C 0.59 10.24 7.69 -12.39 -0.10 10.14 16 8 O -0.53 -11.12 16.36 5.30 0.09 -11.04 16 9 N -0.60 -9.38 2.97 -173.93 -0.52 -9.90 16 10 C 0.09 1.06 6.10 -3.72 -0.02 1.03 16 11 C -0.13 -1.47 6.09 -26.60 -0.16 -1.63 16 12 C -0.11 -1.45 4.85 -26.67 -0.13 -1.58 16 13 C -0.11 -1.73 1.98 -90.50 -0.18 -1.91 16 14 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 15 C 0.18 3.57 2.47 -67.93 -0.17 3.40 16 16 H 0.06 1.10 8.08 -51.93 -0.42 0.69 16 17 C -0.16 -2.90 9.15 37.16 0.34 -2.56 16 18 N -0.75 -18.13 4.32 -53.43 -0.23 -18.36 16 19 C -0.24 -6.86 10.41 -15.06 -0.16 -7.02 16 20 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 21 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 22 N -0.94 -30.21 13.97 55.49 0.78 -29.43 16 23 Si 0.88 23.49 27.73 -169.99 -4.71 18.77 16 24 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 25 H -0.29 -7.92 7.11 56.52 0.40 -7.52 16 26 H -0.27 -7.08 6.52 56.52 0.37 -6.71 16 27 C 0.12 2.14 5.48 -3.71 -0.02 2.12 16 28 N -0.26 -2.84 8.73 33.42 0.29 -2.55 16 29 N -0.39 -2.91 6.83 33.50 0.23 -2.68 16 30 H 0.44 1.62 8.96 -190.44 -1.71 -0.09 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.05 0.18 8.14 -51.93 -0.42 -0.25 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 36 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 37 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 39 H 0.12 1.36 4.20 -67.31 -0.28 1.08 16 40 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 41 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.07 0.83 6.36 -51.93 -0.33 0.50 16 45 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.04 0.61 6.40 -51.93 -0.33 0.28 16 47 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 48 H 0.36 8.93 5.48 -40.82 -0.22 8.71 16 49 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 50 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 51 H 0.10 2.18 6.51 -51.93 -0.34 1.84 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -35.85 399.55 -10.21 -46.06 By element: Atomic # 1 Polarization: 15.79 SS G_CDS: -9.99 Total: 5.80 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: -2.16 Total: -2.69 kcal Atomic # 7 Polarization: -63.47 SS G_CDS: 0.55 Total: -62.92 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.09 Total: -11.04 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -4.71 Total: 18.77 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.85 -10.21 -46.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715453042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.346 kcal (2) G-P(sol) polarization free energy of solvation -35.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.493 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds