Wall clock time and date at job start Tue Mar 31 2020 19:51:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47324 * 2 1 4 4 C 1.50699 * 109.47266 * 180.02562 * 3 2 1 5 5 C 1.35360 * 126.38823 * 84.99869 * 4 3 2 6 6 C 1.41495 * 105.50785 * 179.97438 * 5 4 3 7 7 C 1.47709 * 126.52130 * 179.97438 * 6 5 4 8 8 O 1.21569 * 119.99990 * 352.88082 * 7 6 5 9 9 N 1.34783 * 119.99937 * 172.88374 * 7 6 5 10 10 C 1.46922 * 120.63376 * 353.01142 * 9 7 6 11 11 C 1.53182 * 108.89754 * 233.51784 * 10 9 7 12 12 C 1.53074 * 109.29468 * 305.57991 * 11 10 9 13 13 C 1.53042 * 109.65957 * 61.14941 * 12 11 10 14 14 H 1.09005 * 109.49407 * 58.65755 * 13 12 11 15 15 C 1.53002 * 109.49785 * 178.74675 * 13 12 11 16 16 H 1.09002 * 109.46851 * 59.83897 * 15 13 12 17 17 C 1.52998 * 109.47395 * 299.84323 * 15 13 12 18 18 N 1.46500 * 109.46939 * 179.83628 * 15 13 12 19 19 C 1.36939 * 119.99852 * 204.99937 * 18 15 13 20 20 H 1.07994 * 119.99807 * 0.02562 * 19 18 15 21 21 C 1.38809 * 119.99729 * 180.02562 * 19 18 15 22 22 N 1.31624 * 119.99675 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00208 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47304 * 90.00437 * 23 21 19 25 25 H 1.48505 * 109.47433 * 210.00229 * 23 21 19 26 26 H 1.48499 * 109.47281 * 330.00236 * 23 21 19 27 27 C 1.46928 * 120.62949 * 172.99145 * 9 7 6 28 28 N 1.31811 * 106.96577 * 0.24135 * 6 5 4 29 29 N 1.28475 * 110.06947 * 359.59539 * 28 6 5 30 30 H 0.96997 * 124.88656 * 180.20677 * 29 28 6 31 31 H 1.08997 * 109.47594 * 59.99301 * 1 2 3 32 32 H 1.09000 * 109.47453 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47051 * 299.99872 * 1 2 3 34 34 H 1.09004 * 109.47051 * 240.00128 * 2 1 3 35 35 H 1.09003 * 109.47743 * 120.00246 * 2 1 3 36 36 H 1.08997 * 109.47127 * 60.00412 * 3 2 1 37 37 H 1.09001 * 109.46975 * 300.00205 * 3 2 1 38 38 H 1.08007 * 127.24885 * 359.95866 * 5 4 3 39 39 H 1.09004 * 109.58655 * 353.38101 * 10 9 7 40 40 H 1.09006 * 109.58489 * 113.65765 * 10 9 7 41 41 H 1.09001 * 109.49863 * 65.38819 * 11 10 9 42 42 H 1.09000 * 109.50266 * 185.48511 * 11 10 9 43 43 H 1.09006 * 109.34728 * 301.12584 * 12 11 10 44 44 H 1.08997 * 109.45307 * 181.24164 * 12 11 10 45 45 H 1.09002 * 109.46773 * 299.99621 * 17 15 13 46 46 H 1.08998 * 109.47115 * 59.99510 * 17 15 13 47 47 H 1.08994 * 109.47435 * 180.02562 * 17 15 13 48 48 H 0.97000 * 120.00075 * 25.01252 * 18 15 13 49 49 H 0.97006 * 119.99385 * 179.97438 * 22 21 19 50 50 H 1.09000 * 109.58919 * 246.20193 * 27 9 7 51 51 H 1.09004 * 109.58578 * 6.48632 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5470 1.4425 -0.0006 5 6 4.3495 1.3476 -1.0865 6 6 5.6718 1.3921 -0.5847 7 6 6.9158 1.3225 -1.3780 8 8 6.8646 1.0866 -2.5695 9 7 8.1078 1.5206 -0.7808 10 6 8.1799 1.9558 0.6206 11 6 9.0529 3.2117 0.7057 12 6 10.4123 2.9274 0.0621 13 6 10.2186 2.5689 -1.4131 14 1 9.7194 3.3918 -1.9249 15 6 11.5817 2.3160 -2.0605 16 1 12.0807 1.4941 -1.5471 17 6 12.4388 3.5789 -1.9545 18 7 11.3953 1.9692 -3.4716 19 6 12.3407 1.2238 -4.1241 20 1 13.2235 0.8913 -3.5983 21 6 12.1644 0.8956 -5.4612 22 7 13.0729 0.1787 -6.0882 23 14 10.6370 1.4701 -6.3704 24 1 10.8972 2.7956 -6.9871 25 1 10.2942 0.4893 -7.4314 26 1 9.5053 1.5820 -5.4155 27 6 9.3599 1.3048 -1.5188 28 7 5.5824 1.5016 0.7258 29 7 4.3485 1.5376 1.0820 30 1 4.0374 1.6182 1.9972 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 1.6767 1.9563 0.8900 37 1 1.6766 1.9563 -0.8900 38 1 4.0448 1.2568 -2.1187 39 1 7.1778 2.1820 0.9850 40 1 8.6192 1.1637 1.2271 41 1 8.5656 4.0301 0.1757 42 1 9.1933 3.4871 1.7510 43 1 10.8893 2.0943 0.5785 44 1 11.0435 3.8125 0.1409 45 1 11.9398 4.4008 -2.4679 46 1 12.5774 3.8369 -0.9046 47 1 13.4097 3.3989 -2.4161 48 1 10.6022 2.2676 -3.9437 49 1 12.9494 -0.0509 -7.0226 50 1 9.8976 0.4606 -1.0873 51 1 9.1362 1.0990 -2.5656 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715453042.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:51:43 Heat of formation + Delta-G solvation = 19.283254 kcal Electronic energy + Delta-G solvation = -29400.037039 eV Core-core repulsion = 25527.971246 eV Total energy + Delta-G solvation = -3872.065793 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.80729 -41.11621 -39.10709 -37.10064 -36.24994 -34.70970 -33.37092 -32.94055 -32.05551 -31.63211 -30.07308 -27.45124 -26.93694 -25.97305 -24.51324 -23.82088 -22.87973 -22.11339 -21.92408 -21.26638 -19.87565 -19.55518 -18.92464 -17.72160 -17.05774 -16.91288 -16.74407 -16.10897 -15.96383 -15.87194 -15.41921 -15.29923 -14.90972 -14.78593 -14.59475 -14.40792 -14.30363 -14.23332 -13.97468 -13.93648 -13.56666 -13.22702 -13.05786 -12.86904 -12.62316 -12.48424 -12.41136 -12.21062 -12.16969 -12.13221 -11.86810 -11.76811 -11.58316 -11.50229 -11.43364 -11.29298 -11.04041 -10.85828 -10.48156 -9.96503 -9.65380 -9.29050 -8.02958 -5.33062 0.41282 1.05111 1.32881 1.37878 1.44720 1.71434 2.11009 2.24962 2.46128 3.21352 3.29590 3.51470 3.62319 3.81226 3.82556 3.95064 4.04034 4.14237 4.16340 4.20514 4.31991 4.42757 4.43408 4.51240 4.58728 4.66685 4.72018 4.75056 4.81974 4.84451 4.90991 4.92421 4.97921 5.00800 5.01426 5.05613 5.13347 5.21006 5.25552 5.28967 5.33442 5.36217 5.47035 5.50185 5.55089 5.62997 5.79260 6.08547 6.22694 6.35200 6.79694 7.07072 7.08498 7.86940 8.03519 9.18817 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.014115 B = 0.002877 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.207468 B = 9730.290706 C =11353.163389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.121 4.121 3 C -0.047 4.047 4 C 0.046 3.954 5 C -0.204 4.204 6 C -0.028 4.028 7 C 0.585 3.415 8 O -0.583 6.583 9 N -0.595 5.595 10 C 0.083 3.917 11 C -0.124 4.124 12 C -0.109 4.109 13 C -0.093 4.093 14 H 0.059 0.941 15 C 0.176 3.824 16 H 0.050 0.950 17 C -0.154 4.154 18 N -0.754 5.754 19 C -0.215 4.215 20 H 0.065 0.935 21 C -0.060 4.060 22 N -0.982 5.982 23 Si 0.940 3.060 24 H -0.277 1.277 25 H -0.297 1.297 26 H -0.269 1.269 27 C 0.124 3.876 28 N -0.254 5.254 29 N -0.360 5.360 30 H 0.463 0.537 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.052 0.948 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.152 0.848 39 H 0.131 0.869 40 H 0.076 0.924 41 H 0.056 0.944 42 H 0.108 0.892 43 H 0.074 0.926 44 H 0.087 0.913 45 H 0.045 0.955 46 H 0.083 0.917 47 H 0.033 0.967 48 H 0.359 0.641 49 H 0.256 0.744 50 H 0.069 0.931 51 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.327 6.928 25.277 37.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.159 4.159 3 C -0.085 4.085 4 C -0.081 4.081 5 C -0.232 4.232 6 C -0.186 4.186 7 C 0.373 3.627 8 O -0.462 6.462 9 N -0.326 5.326 10 C -0.039 4.039 11 C -0.162 4.162 12 C -0.147 4.147 13 C -0.113 4.113 14 H 0.077 0.923 15 C 0.069 3.931 16 H 0.068 0.932 17 C -0.214 4.214 18 N -0.397 5.397 19 C -0.346 4.346 20 H 0.083 0.917 21 C -0.251 4.251 22 N -0.633 5.633 23 Si 0.770 3.230 24 H -0.203 1.203 25 H -0.224 1.224 26 H -0.194 1.194 27 C 0.001 3.999 28 N -0.091 5.091 29 N -0.077 5.077 30 H 0.312 0.688 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.117 0.883 38 H 0.170 0.830 39 H 0.148 0.852 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.126 0.874 43 H 0.093 0.907 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.102 0.898 47 H 0.052 0.948 48 H 0.192 0.808 49 H 0.065 0.935 50 H 0.087 0.913 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -25.482 6.753 25.574 36.728 hybrid contribution -0.782 -0.247 -1.974 2.137 sum -26.263 6.506 23.601 35.904 Atomic orbital electron populations 1.21761 0.94213 1.02187 1.02695 1.21520 0.96826 0.95281 1.02255 1.20385 0.83512 0.98666 1.05965 1.21706 0.96228 1.04133 0.86041 1.21638 0.90421 1.10270 1.00852 1.21596 0.94420 1.11936 0.90696 1.17592 0.82929 0.76478 0.85737 1.90795 1.87037 1.51836 1.16487 1.48102 1.04518 1.65532 1.14466 1.22678 1.04781 0.97134 0.79289 1.21911 0.94881 0.96736 1.02715 1.21630 0.98043 1.02990 0.92015 1.21651 0.94835 0.96351 0.98430 0.92283 1.20455 0.93757 0.95925 0.82996 0.93186 1.22294 0.99407 0.98001 1.01684 1.42932 1.23306 1.64185 1.09249 1.19039 0.99600 1.22855 0.93087 0.91725 1.25292 1.00588 1.01384 0.97847 1.69850 1.37167 1.45273 1.11030 0.85617 0.81118 0.77671 0.78636 1.20335 1.22387 1.19422 1.21501 0.83612 0.98120 0.96646 1.73286 1.02320 1.20087 1.13410 1.43558 1.02200 1.51060 1.10889 0.68807 0.92283 0.92685 0.91355 0.92881 0.91704 0.87453 0.88349 0.82979 0.85212 0.90588 0.92556 0.87370 0.90712 0.89493 0.93622 0.89841 0.94815 0.80836 0.93523 0.91266 0.92618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 9.91 71.98 0.71 -0.12 16 2 C -0.12 -0.92 5.92 30.59 0.18 -0.73 16 3 C -0.05 -0.29 5.77 29.85 0.17 -0.12 16 4 C 0.05 0.63 6.48 41.40 0.27 0.90 16 5 C -0.20 -4.69 10.74 22.41 0.24 -4.45 16 6 C -0.03 -0.77 6.82 42.45 0.29 -0.48 16 7 C 0.58 20.91 7.69 86.75 0.67 21.58 16 8 O -0.58 -26.40 16.36 -3.93 -0.06 -26.46 16 9 N -0.60 -18.72 2.97 -822.47 -2.45 -21.17 16 10 C 0.08 1.81 6.10 86.36 0.53 2.34 16 11 C -0.12 -2.29 6.09 30.68 0.19 -2.10 16 12 C -0.11 -2.40 4.85 30.63 0.15 -2.25 16 13 C -0.09 -2.96 1.98 -10.72 -0.02 -2.98 16 14 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 15 C 0.18 6.76 2.47 44.99 0.11 6.88 16 16 H 0.05 1.98 8.08 -2.39 -0.02 1.96 16 17 C -0.15 -5.19 9.15 71.98 0.66 -4.54 16 18 N -0.75 -37.29 4.32 -322.94 -1.40 -38.69 16 19 C -0.21 -12.70 10.41 84.03 0.87 -11.83 16 20 H 0.06 4.10 8.06 -2.91 -0.02 4.07 16 21 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.98 -65.60 13.97 21.65 0.30 -65.30 16 23 Si 0.94 50.52 27.73 68.60 1.90 52.43 16 24 H -0.28 -14.35 7.11 99.48 0.71 -13.64 16 25 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 26 H -0.27 -14.21 6.52 99.48 0.65 -13.56 16 27 C 0.12 4.50 5.48 86.36 0.47 4.97 16 28 N -0.25 -5.02 8.73 -48.18 -0.42 -5.44 16 29 N -0.36 -4.27 6.83 -47.93 -0.33 -4.60 16 30 H 0.46 1.34 8.96 -219.99 -1.97 -0.63 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.05 0.35 8.14 -2.39 -0.02 0.33 16 33 H 0.07 0.21 8.14 -2.39 -0.02 0.19 16 34 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 36 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 37 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 38 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 39 H 0.13 2.61 4.20 -22.28 -0.09 2.51 16 40 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.11 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 44 H 0.09 1.67 6.36 -2.39 -0.02 1.65 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 2.12 6.40 -2.39 -0.02 2.11 16 47 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 48 H 0.36 18.14 5.48 -92.71 -0.51 17.63 16 49 H 0.26 16.39 8.31 -92.70 -0.77 15.62 16 50 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 51 H 0.06 2.54 6.51 -2.38 -0.02 2.53 16 Total: -1.00 -83.62 399.55 1.82 -81.80 By element: Atomic # 1 Polarization: 25.31 SS G_CDS: -1.69 Total: 23.63 kcal Atomic # 6 Polarization: -2.15 SS G_CDS: 5.96 Total: 3.80 kcal Atomic # 7 Polarization: -130.91 SS G_CDS: -4.29 Total: -135.19 kcal Atomic # 8 Polarization: -26.40 SS G_CDS: -0.06 Total: -26.46 kcal Atomic # 14 Polarization: 50.52 SS G_CDS: 1.90 Total: 52.43 kcal Total: -83.62 1.82 -81.80 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715453042.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.082 kcal (2) G-P(sol) polarization free energy of solvation -83.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds