Wall clock time and date at job start Tue Mar 31 2020 19:40:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30450 * 125.98388 * 300.02093 * 4 2 1 6 6 N 1.39935 * 108.89291 * 179.97438 * 5 4 2 7 7 C 1.46500 * 125.74954 * 179.97438 * 6 5 4 8 8 C 1.34254 * 108.49648 * 0.02562 * 6 5 4 9 9 C 1.38051 * 107.41639 * 359.76310 * 8 6 5 10 10 C 1.47429 * 126.41916 * 180.25453 * 9 8 6 11 11 O 1.21595 * 120.00010 * 180.12855 * 10 9 8 12 12 N 1.34778 * 119.99489 * 0.13500 * 10 9 8 13 13 C 1.46499 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.09006 * 110.01516 * 325.06374 * 13 12 10 15 15 C 1.54273 * 110.03233 * 86.44938 * 13 12 10 16 16 C 1.54886 * 104.19562 * 142.89352 * 15 13 12 17 17 C 1.54884 * 102.75151 * 322.06219 * 16 15 13 18 18 C 1.53871 * 110.03428 * 203.61749 * 13 12 10 19 19 H 1.08997 * 110.03190 * 121.43112 * 18 13 12 20 20 C 1.53000 * 110.03147 * 0.02562 * 18 13 12 21 21 N 1.46504 * 109.46930 * 174.99923 * 20 18 13 22 22 C 1.36930 * 119.99683 * 179.97438 * 21 20 18 23 23 H 1.08010 * 120.00459 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00104 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00487 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99963 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47274 * 89.99332 * 26 24 22 28 28 H 1.48501 * 109.47107 * 209.99728 * 26 24 22 29 29 H 1.48507 * 109.46556 * 329.99663 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.08996 * 109.47382 * 89.98116 * 7 6 5 38 38 H 1.09001 * 109.46929 * 209.97829 * 7 6 5 39 39 H 1.08994 * 109.47443 * 329.97794 * 7 6 5 40 40 H 1.07995 * 126.29547 * 179.97438 * 8 6 5 41 41 H 0.97001 * 120.00179 * 359.97438 * 12 10 9 42 42 H 1.08997 * 110.48930 * 261.57799 * 15 13 12 43 43 H 1.09003 * 110.47978 * 24.21733 * 15 13 12 44 44 H 1.09004 * 110.75402 * 80.37537 * 16 15 13 45 45 H 1.08995 * 110.75876 * 203.74491 * 16 15 13 46 46 H 1.08995 * 110.49230 * 156.61797 * 17 16 15 47 47 H 1.09007 * 110.48721 * 279.13361 * 17 16 15 48 48 H 1.09004 * 109.47096 * 294.99714 * 20 18 13 49 49 H 1.08998 * 109.46847 * 55.00061 * 20 18 13 50 50 H 0.96994 * 120.00141 * 359.97438 * 21 20 18 51 51 H 0.97000 * 120.00690 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7899 -0.3684 2.4657 6 7 2.4293 -1.2734 3.3203 7 6 2.4014 -1.2339 4.7845 8 6 3.0736 -2.1832 2.5723 9 6 2.8442 -1.8667 1.2483 10 6 3.3530 -2.5971 0.0729 11 8 3.0792 -2.2120 -1.0475 12 7 4.1214 -3.6916 0.2405 13 6 4.6265 -4.4177 -0.9274 14 1 3.8893 -4.3923 -1.7300 15 6 5.9517 -3.7903 -1.4071 16 6 6.8036 -5.0020 -1.8599 17 6 6.4487 -6.0817 -0.8076 18 6 4.9425 -5.8745 -0.5462 19 1 4.3590 -6.5571 -1.1640 20 6 4.6296 -6.1089 0.9330 21 7 4.8206 -7.5255 1.2541 22 6 4.5985 -7.9746 2.5284 23 1 4.2821 -7.2847 3.2968 24 6 4.7790 -9.3169 2.8326 25 7 4.5660 -9.7486 4.0576 26 14 5.3256 -10.5105 1.5036 27 1 6.8090 -10.5735 1.4744 28 1 4.7784 -11.8600 1.7947 29 1 4.8238 -10.0467 0.1850 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.5550 -1.8168 5.1477 38 1 3.3273 -1.6545 5.1770 39 1 2.3013 -0.2012 5.1184 40 1 3.6603 -3.0125 2.9389 41 1 4.3400 -3.9985 1.1343 42 1 5.7733 -3.1153 -2.2442 43 1 6.4425 -3.2634 -0.5888 44 1 6.5133 -5.3265 -2.8592 45 1 7.8662 -4.7622 -1.8239 46 1 6.6328 -7.0789 -1.2071 47 1 7.0215 -5.9262 0.1067 48 1 5.2979 -5.5041 1.5460 49 1 3.5963 -5.8267 1.1349 50 1 5.1044 -8.1452 0.5640 51 1 4.6917 -10.6867 4.2701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715555979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:40 Heat of formation + Delta-G solvation = 39.140816 kcal Electronic energy + Delta-G solvation = -29658.205156 eV Core-core repulsion = 25787.000451 eV Total energy + Delta-G solvation = -3871.204704 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.57179 -39.76884 -37.83222 -35.86374 -34.56659 -33.58696 -32.54627 -31.60253 -30.48849 -29.02965 -27.66835 -27.17632 -26.84355 -24.73859 -23.13571 -22.37787 -22.14020 -20.67349 -20.27154 -19.39091 -18.94808 -17.90734 -17.43791 -16.32295 -15.82620 -15.65345 -15.27038 -14.80071 -14.74926 -14.61475 -14.41496 -14.18253 -13.90894 -13.72339 -13.45934 -13.31351 -13.09568 -12.94380 -12.72459 -12.57274 -12.27747 -12.18190 -11.80619 -11.65203 -11.48680 -11.23223 -11.09724 -10.99155 -10.93597 -10.88882 -10.79489 -10.52190 -10.51535 -10.36032 -10.07691 -9.66646 -9.55805 -9.47245 -9.01934 -8.91475 -8.63566 -7.30316 -5.83888 -3.19420 1.43101 2.12770 2.21493 3.33197 3.36165 3.38188 3.41798 3.54465 4.18982 4.47094 4.53491 4.59445 4.69286 4.76003 4.89972 4.94094 5.00505 5.11032 5.15605 5.16669 5.31175 5.31431 5.44821 5.47331 5.52095 5.55241 5.59237 5.62700 5.67954 5.76976 5.79073 5.79671 5.85497 5.87774 5.95954 6.01222 6.10075 6.19720 6.22473 6.26278 6.31579 6.42175 6.50700 6.52135 6.63950 6.66496 6.77223 7.48133 7.72250 7.90409 8.34988 8.43338 9.14064 9.86839 10.06763 11.34379 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.003258 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.700977 B = 8592.102925 C =10226.612614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.030 4.030 3 C -0.138 4.138 4 C 0.140 3.860 5 N -0.299 5.299 6 N -0.361 5.361 7 C 0.096 3.904 8 C 0.104 3.896 9 C -0.289 4.289 10 C 0.596 3.404 11 O -0.548 6.548 12 N -0.721 5.721 13 C 0.153 3.847 14 H 0.090 0.910 15 C -0.131 4.131 16 C -0.124 4.124 17 C -0.115 4.115 18 C -0.112 4.112 19 H 0.081 0.919 20 C 0.161 3.839 21 N -0.752 5.752 22 C -0.246 4.246 23 H 0.089 0.911 24 C 0.006 3.994 25 N -0.934 5.934 26 Si 0.884 3.116 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.276 1.276 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.118 0.882 34 H 0.056 0.944 35 H 0.053 0.947 36 H 0.060 0.940 37 H 0.081 0.919 38 H 0.093 0.907 39 H 0.091 0.909 40 H 0.184 0.816 41 H 0.403 0.597 42 H 0.068 0.932 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.065 0.935 46 H 0.065 0.935 47 H 0.073 0.927 48 H 0.025 0.975 49 H 0.030 0.970 50 H 0.362 0.638 51 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.319 19.665 -6.095 20.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.051 4.051 3 C -0.196 4.196 4 C -0.028 4.028 5 N -0.120 5.120 6 N -0.138 5.138 7 C -0.045 4.045 8 C -0.048 4.048 9 C -0.304 4.304 10 C 0.384 3.616 11 O -0.427 6.427 12 N -0.374 5.374 13 C 0.048 3.952 14 H 0.108 0.892 15 C -0.170 4.170 16 C -0.162 4.162 17 C -0.153 4.153 18 C -0.132 4.132 19 H 0.100 0.900 20 C 0.034 3.966 21 N -0.398 5.398 22 C -0.376 4.376 23 H 0.107 0.893 24 C -0.190 4.190 25 N -0.581 5.581 26 Si 0.714 3.286 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.136 0.864 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.099 0.901 38 H 0.112 0.888 39 H 0.110 0.890 40 H 0.201 0.799 41 H 0.241 0.759 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.084 0.916 47 H 0.092 0.908 48 H 0.042 0.958 49 H 0.047 0.953 50 H 0.195 0.805 51 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.176 20.762 -5.659 21.629 hybrid contribution 0.941 -1.956 -0.537 2.236 sum -1.235 18.806 -6.196 19.839 Atomic orbital electron populations 1.21776 0.94024 1.02025 1.01873 1.19968 0.95881 0.95577 0.93631 1.21768 1.01070 0.94882 1.01884 1.22363 0.94055 0.93003 0.93333 1.77124 1.20293 1.14436 1.00137 1.48310 1.37591 1.20784 1.07146 1.22016 1.04170 1.04927 0.73381 1.23190 0.96078 0.94522 0.91042 1.20252 1.13867 1.03789 0.92508 1.17246 0.77242 0.79581 0.87561 1.90659 1.59520 1.67479 1.25045 1.46233 1.52324 1.28385 1.10471 1.21575 0.95539 0.90111 0.88002 0.89178 1.22766 0.95394 0.97746 1.01072 1.22480 0.99395 0.95422 0.98919 1.22401 0.95056 0.98668 0.99196 1.22266 0.97234 0.94916 0.98753 0.90011 1.20670 0.97801 0.86958 0.91212 1.42674 1.83661 1.03847 1.09579 1.19013 1.38951 0.93641 0.85979 0.89344 1.24664 1.01496 0.96773 0.96095 1.69692 1.55402 1.15143 1.17910 0.86553 0.78649 0.81377 0.81998 1.21013 1.21729 1.20260 0.92077 0.92492 0.92646 0.86429 0.92511 0.92772 0.92083 0.90054 0.88833 0.89000 0.79868 0.75887 0.91327 0.91285 0.91552 0.91600 0.91647 0.90785 0.95751 0.95262 0.80521 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.03 -0.37 3.26 -91.77 -0.30 -0.67 16 3 C -0.14 -1.43 9.17 37.15 0.34 -1.08 16 4 C 0.14 1.90 5.77 -82.02 -0.47 1.43 16 5 N -0.30 -3.95 12.50 33.90 0.42 -3.53 16 6 N -0.36 -4.00 3.98 -67.60 -0.27 -4.27 16 7 C 0.10 0.65 11.44 59.85 0.68 1.33 16 8 C 0.10 1.17 10.99 -16.56 -0.18 0.99 16 9 C -0.29 -3.92 6.13 -105.06 -0.64 -4.56 16 10 C 0.60 8.70 7.80 -12.52 -0.10 8.61 16 11 O -0.55 -9.19 14.24 5.28 0.08 -9.11 16 12 N -0.72 -9.54 4.42 -53.79 -0.24 -9.78 16 13 C 0.15 2.03 3.21 -66.81 -0.21 1.82 16 14 H 0.09 1.28 7.61 -51.93 -0.39 0.89 16 15 C -0.13 -1.56 6.53 -25.07 -0.16 -1.72 16 16 C -0.12 -1.38 6.91 -24.74 -0.17 -1.55 16 17 C -0.12 -1.55 6.08 -25.07 -0.15 -1.70 16 18 C -0.11 -1.63 2.96 -89.50 -0.26 -1.89 16 19 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 20 C 0.16 2.83 4.18 -4.04 -0.02 2.81 16 21 N -0.75 -16.87 5.25 -59.90 -0.31 -17.18 16 22 C -0.25 -6.65 10.47 -15.06 -0.16 -6.81 16 23 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.07 16 25 N -0.93 -28.56 13.97 55.49 0.78 -27.78 16 26 Si 0.88 21.58 27.74 -169.99 -4.71 16.86 16 27 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 29 H -0.28 -6.36 6.52 56.52 0.37 -5.99 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.62 5.60 -51.93 -0.29 1.33 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.18 1.58 7.46 -52.49 -0.39 1.19 16 41 H 0.40 4.99 4.76 -40.82 -0.19 4.80 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.07 0.82 8.05 -51.93 -0.42 0.40 16 44 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.07 1.06 7.77 -51.93 -0.40 0.66 16 48 H 0.02 0.42 7.12 -51.93 -0.37 0.05 16 49 H 0.03 0.53 7.40 -51.93 -0.38 0.15 16 50 H 0.36 8.03 5.41 -40.82 -0.22 7.81 16 51 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 403.95 15.07 6.09 6.09 Total: -1.00 -33.80 403.95 -8.32 -42.12 By element: Atomic # 1 Polarization: 19.25 SS G_CDS: -8.58 Total: 10.67 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.57 Total: -4.10 kcal Atomic # 7 Polarization: -62.91 SS G_CDS: 0.38 Total: -62.53 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: 0.08 Total: -9.11 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.71 Total: 16.86 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.80 -8.32 -42.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715555979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.264 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds