Wall clock time and date at job start Tue Mar 31 2020 19:40:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.50706 * 109.47238 * 120.00339 * 2 1 3 5 5 N 1.30450 * 125.98388 * 300.02093 * 4 2 1 6 6 N 1.39935 * 108.89291 * 179.97438 * 5 4 2 7 7 C 1.46500 * 125.74954 * 179.97438 * 6 5 4 8 8 C 1.34254 * 108.49648 * 0.02562 * 6 5 4 9 9 C 1.38051 * 107.41639 * 359.76310 * 8 6 5 10 10 C 1.47429 * 126.41916 * 180.25453 * 9 8 6 11 11 O 1.21595 * 120.00010 * 180.12855 * 10 9 8 12 12 N 1.34778 * 119.99489 * 0.13500 * 10 9 8 13 13 C 1.46499 * 119.99772 * 179.97438 * 12 10 9 14 14 H 1.09006 * 110.01516 * 325.06374 * 13 12 10 15 15 C 1.54273 * 110.03233 * 86.44938 * 13 12 10 16 16 C 1.54886 * 104.19562 * 142.89352 * 15 13 12 17 17 C 1.54884 * 102.75151 * 322.06219 * 16 15 13 18 18 C 1.53871 * 110.03428 * 203.61749 * 13 12 10 19 19 H 1.08997 * 110.03190 * 121.43112 * 18 13 12 20 20 C 1.53000 * 110.03147 * 0.02562 * 18 13 12 21 21 N 1.46504 * 109.46930 * 174.99923 * 20 18 13 22 22 C 1.36930 * 119.99683 * 179.97438 * 21 20 18 23 23 H 1.08010 * 120.00459 * 0.02562 * 22 21 20 24 24 C 1.38812 * 120.00104 * 179.97438 * 22 21 20 25 25 N 1.31619 * 120.00487 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 119.99963 * 0.02562 * 24 22 21 27 27 H 1.48503 * 109.47274 * 89.99332 * 26 24 22 28 28 H 1.48501 * 109.47107 * 209.99728 * 26 24 22 29 29 H 1.48507 * 109.46556 * 329.99663 * 26 24 22 30 30 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 31 31 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 32 32 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 35 35 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 36 36 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 37 37 H 1.08996 * 109.47382 * 89.98116 * 7 6 5 38 38 H 1.09001 * 109.46929 * 209.97829 * 7 6 5 39 39 H 1.08994 * 109.47443 * 329.97794 * 7 6 5 40 40 H 1.07995 * 126.29547 * 179.97438 * 8 6 5 41 41 H 0.97001 * 120.00179 * 359.97438 * 12 10 9 42 42 H 1.08997 * 110.48930 * 261.57799 * 15 13 12 43 43 H 1.09003 * 110.47978 * 24.21733 * 15 13 12 44 44 H 1.09004 * 110.75402 * 80.37537 * 16 15 13 45 45 H 1.08995 * 110.75876 * 203.74491 * 16 15 13 46 46 H 1.08995 * 110.49230 * 156.61797 * 17 16 15 47 47 H 1.09007 * 110.48721 * 279.13361 * 17 16 15 48 48 H 1.09004 * 109.47096 * 294.99714 * 20 18 13 49 49 H 1.08998 * 109.46847 * 55.00061 * 20 18 13 50 50 H 0.96994 * 120.00141 * 359.97438 * 21 20 18 51 51 H 0.97000 * 120.00690 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 1.2305 5 7 1.7899 -0.3684 2.4657 6 7 2.4293 -1.2734 3.3203 7 6 2.4014 -1.2339 4.7845 8 6 3.0736 -2.1832 2.5723 9 6 2.8442 -1.8667 1.2483 10 6 3.3530 -2.5971 0.0729 11 8 3.0792 -2.2120 -1.0475 12 7 4.1214 -3.6916 0.2405 13 6 4.6265 -4.4177 -0.9274 14 1 3.8893 -4.3923 -1.7300 15 6 5.9517 -3.7903 -1.4071 16 6 6.8036 -5.0020 -1.8599 17 6 6.4487 -6.0817 -0.8076 18 6 4.9425 -5.8745 -0.5462 19 1 4.3590 -6.5571 -1.1640 20 6 4.6296 -6.1089 0.9330 21 7 4.8206 -7.5255 1.2541 22 6 4.5985 -7.9746 2.5284 23 1 4.2821 -7.2847 3.2968 24 6 4.7790 -9.3169 2.8326 25 7 4.5660 -9.7486 4.0576 26 14 5.3256 -10.5105 1.5036 27 1 6.8090 -10.5735 1.4744 28 1 4.7784 -11.8600 1.7947 29 1 4.8238 -10.0467 0.1850 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 3.1300 1.4424 0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.5550 -1.8168 5.1477 38 1 3.3273 -1.6545 5.1770 39 1 2.3013 -0.2012 5.1184 40 1 3.6603 -3.0125 2.9389 41 1 4.3400 -3.9985 1.1343 42 1 5.7733 -3.1153 -2.2442 43 1 6.4425 -3.2634 -0.5888 44 1 6.5133 -5.3265 -2.8592 45 1 7.8662 -4.7622 -1.8239 46 1 6.6328 -7.0789 -1.2071 47 1 7.0215 -5.9262 0.1067 48 1 5.2979 -5.5041 1.5460 49 1 3.5963 -5.8267 1.1349 50 1 5.1044 -8.1452 0.5640 51 1 4.6917 -10.6867 4.2701 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715555979.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:38 Heat of formation + Delta-G solvation = 17.772540 kcal Electronic energy + Delta-G solvation = -29659.131754 eV Core-core repulsion = 25787.000451 eV Total energy + Delta-G solvation = -3872.131302 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.50958 -40.88240 -38.99606 -36.76693 -36.31123 -34.67468 -33.53471 -33.35510 -31.46086 -30.51226 -28.62320 -28.02110 -27.67614 -26.31856 -24.13579 -23.92128 -23.19789 -21.67271 -21.31792 -20.60670 -20.11684 -19.42747 -18.69862 -17.36744 -16.77498 -16.68674 -16.50452 -16.27423 -15.79714 -15.67846 -15.52480 -15.41162 -15.19332 -14.99291 -14.64100 -14.48043 -14.26741 -14.07231 -13.58586 -13.52774 -13.45350 -13.33229 -12.97453 -12.89002 -12.78559 -12.38544 -12.32552 -12.10699 -12.08797 -11.93003 -11.91659 -11.80258 -11.76223 -11.68240 -11.52757 -11.42854 -10.94844 -10.67246 -10.38521 -10.05632 -9.60549 -9.26825 -8.00783 -5.33271 0.49986 1.11655 1.40104 1.42222 1.43900 1.49503 2.30849 2.46755 2.50325 3.31523 3.32421 3.41131 3.62676 3.71402 3.82982 3.94763 4.01936 4.09779 4.22646 4.27040 4.37139 4.40170 4.41381 4.52627 4.53574 4.57838 4.60779 4.64716 4.66623 4.68709 4.79506 4.80072 4.93759 4.94955 4.96708 5.01924 5.10682 5.13224 5.26042 5.26552 5.32568 5.33947 5.37134 5.51892 5.57022 5.64799 5.78213 5.87679 6.22909 6.50372 6.67265 7.10280 7.33025 7.86850 8.05070 9.20363 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011878 B = 0.003258 C = 0.002737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2356.700977 B = 8592.102925 C =10226.612614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.033 4.033 3 C -0.130 4.130 4 C 0.127 3.873 5 N -0.317 5.317 6 N -0.358 5.358 7 C 0.086 3.914 8 C 0.113 3.887 9 C -0.318 4.318 10 C 0.595 3.405 11 O -0.575 6.575 12 N -0.716 5.716 13 C 0.156 3.844 14 H 0.081 0.919 15 C -0.125 4.125 16 C -0.113 4.113 17 C -0.116 4.116 18 C -0.104 4.104 19 H 0.079 0.921 20 C 0.160 3.840 21 N -0.754 5.754 22 C -0.229 4.229 23 H 0.064 0.936 24 C -0.063 4.063 25 N -0.983 5.983 26 Si 0.948 3.052 27 H -0.277 1.277 28 H -0.300 1.300 29 H -0.253 1.253 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.041 0.959 33 H 0.099 0.901 34 H 0.056 0.944 35 H 0.045 0.955 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.118 0.882 39 H 0.101 0.899 40 H 0.209 0.791 41 H 0.407 0.593 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.037 0.963 49 H 0.025 0.975 50 H 0.365 0.635 51 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.410 20.294 -7.185 21.532 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.054 4.054 3 C -0.188 4.188 4 C -0.040 4.040 5 N -0.138 5.138 6 N -0.135 5.135 7 C -0.053 4.053 8 C -0.040 4.040 9 C -0.333 4.333 10 C 0.384 3.616 11 O -0.456 6.456 12 N -0.369 5.369 13 C 0.051 3.949 14 H 0.099 0.901 15 C -0.164 4.164 16 C -0.151 4.151 17 C -0.153 4.153 18 C -0.124 4.124 19 H 0.098 0.902 20 C 0.034 3.966 21 N -0.400 5.400 22 C -0.360 4.360 23 H 0.082 0.918 24 C -0.254 4.254 25 N -0.634 5.634 26 Si 0.776 3.224 27 H -0.203 1.203 28 H -0.228 1.228 29 H -0.177 1.177 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.060 0.940 33 H 0.117 0.883 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.136 0.864 39 H 0.120 0.880 40 H 0.226 0.774 41 H 0.246 0.754 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.096 0.904 45 H 0.099 0.901 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.054 0.946 49 H 0.043 0.957 50 H 0.199 0.801 51 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.263 21.439 -6.767 22.517 hybrid contribution 0.611 -2.056 -0.092 2.147 sum -0.653 19.382 -6.859 20.571 Atomic orbital electron populations 1.21725 0.93146 1.01398 1.02780 1.19977 0.96612 0.96258 0.92515 1.21707 1.00502 0.93877 1.02747 1.22614 0.94228 0.93272 0.93887 1.77065 1.21070 1.15423 1.00258 1.48688 1.36451 1.19942 1.08447 1.22395 1.05895 1.06062 0.70994 1.23534 0.95401 0.94687 0.90413 1.20317 1.15358 1.04546 0.93116 1.17413 0.76978 0.79644 0.87558 1.90639 1.60597 1.68281 1.26111 1.46170 1.52006 1.28020 1.10665 1.21548 0.96151 0.89489 0.87739 0.90111 1.22710 0.94516 0.98054 1.01093 1.22436 1.00141 0.93881 0.98624 1.22389 0.93743 0.99589 0.99615 1.22177 0.98316 0.95592 0.96274 0.90235 1.20827 0.97720 0.84424 0.93651 1.42694 1.83446 1.05928 1.07932 1.19050 1.36576 0.93161 0.87215 0.91839 1.25437 1.02860 0.98849 0.98274 1.69863 1.57920 1.15297 1.20324 0.85500 0.78370 0.78327 0.80180 1.20296 1.22753 1.17741 0.90220 0.92458 0.93997 0.88275 0.92485 0.93547 0.90295 0.89212 0.86377 0.88044 0.77427 0.75446 0.91223 0.91200 0.90440 0.90052 0.91533 0.91636 0.94563 0.95688 0.80145 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.83 9.18 71.98 0.66 -2.17 16 2 C -0.03 -0.81 3.26 -11.54 -0.04 -0.85 16 3 C -0.13 -2.63 9.17 71.98 0.66 -1.97 16 4 C 0.13 3.46 5.77 43.52 0.25 3.71 16 5 N -0.32 -8.21 12.50 -46.67 -0.58 -8.79 16 6 N -0.36 -7.50 3.98 -367.79 -1.46 -8.96 16 7 C 0.09 1.00 11.44 127.77 1.46 2.46 16 8 C 0.11 2.43 10.99 84.28 0.93 3.36 16 9 C -0.32 -8.57 6.13 -20.15 -0.12 -8.70 16 10 C 0.59 17.32 7.80 86.66 0.68 18.00 16 11 O -0.58 -19.51 14.24 -4.02 -0.06 -19.57 16 12 N -0.72 -18.33 4.42 -442.36 -1.95 -20.28 16 13 C 0.16 3.94 3.21 45.72 0.15 4.08 16 14 H 0.08 2.23 7.61 -2.38 -0.02 2.21 16 15 C -0.13 -2.71 6.53 31.67 0.21 -2.51 16 16 C -0.11 -2.18 6.91 31.88 0.22 -1.96 16 17 C -0.12 -2.80 6.08 31.67 0.19 -2.61 16 18 C -0.10 -2.83 2.96 -10.07 -0.03 -2.86 16 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 20 C 0.16 5.38 4.18 86.38 0.36 5.74 16 21 N -0.75 -32.71 5.25 -343.44 -1.80 -34.52 16 22 C -0.23 -12.32 10.47 84.03 0.88 -11.44 16 23 H 0.06 3.67 8.06 -2.91 -0.02 3.65 16 24 C -0.06 -3.56 5.50 84.86 0.47 -3.10 16 25 N -0.98 -61.13 13.97 21.65 0.30 -60.82 16 26 Si 0.95 44.04 27.74 68.60 1.90 45.94 16 27 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 28 H -0.30 -14.35 7.11 99.48 0.71 -13.65 16 29 H -0.25 -10.60 6.52 99.48 0.65 -9.95 16 30 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.10 2.80 5.60 -2.39 -0.01 2.79 16 34 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 37 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 38 H 0.12 0.80 8.14 -2.39 -0.02 0.79 16 39 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.21 3.21 7.46 -2.91 -0.02 3.19 16 41 H 0.41 9.60 4.76 -92.71 -0.44 9.16 16 42 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.07 1.52 8.05 -2.39 -0.02 1.50 16 44 H 0.08 1.36 8.14 -2.38 -0.02 1.34 16 45 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 46 H 0.07 1.61 8.14 -2.39 -0.02 1.60 16 47 H 0.06 1.71 7.77 -2.38 -0.02 1.70 16 48 H 0.04 1.16 7.12 -2.38 -0.02 1.15 16 49 H 0.03 0.88 7.40 -2.39 -0.02 0.87 16 50 H 0.37 15.35 5.41 -92.71 -0.50 14.85 16 51 H 0.26 15.30 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -73.31 403.95 3.19 -70.12 By element: Atomic # 1 Polarization: 37.77 SS G_CDS: -0.07 Total: 37.70 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: 6.92 Total: -0.81 kcal Atomic # 7 Polarization: -127.88 SS G_CDS: -5.50 Total: -133.38 kcal Atomic # 8 Polarization: -19.51 SS G_CDS: -0.06 Total: -19.57 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.90 Total: 45.94 kcal Total: -73.31 3.19 -70.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715555979.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.891 kcal (2) G-P(sol) polarization free energy of solvation -73.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.118 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds