Wall clock time and date at job start Tue Mar 31 2020 19:40:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.50709 * 109.47190 * 119.99373 * 2 1 3 5 5 N 1.30445 * 125.99029 * 300.00683 * 4 2 1 6 6 N 1.39934 * 108.89757 * 179.97438 * 5 4 2 7 7 C 1.46494 * 125.75639 * 179.97438 * 6 5 4 8 8 C 1.34267 * 108.48980 * 359.74906 * 6 5 4 9 9 C 1.38043 * 107.41552 * 0.39495 * 8 6 5 10 10 C 1.47431 * 126.41481 * 179.87044 * 9 8 6 11 11 O 1.21600 * 120.00226 * 179.68884 * 10 9 8 12 12 N 1.34780 * 119.99823 * 359.69011 * 10 9 8 13 13 C 1.46494 * 120.00106 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.05803 * 326.41827 * 13 12 10 15 15 C 1.53878 * 110.03020 * 87.83440 * 13 12 10 16 16 C 1.54261 * 106.60005 * 119.28726 * 15 13 12 17 17 C 1.54884 * 104.19738 * 23.60840 * 16 15 13 18 18 C 1.54261 * 110.03306 * 204.99834 * 13 12 10 19 19 H 1.09004 * 110.48945 * 335.91560 * 18 13 12 20 20 C 1.53001 * 110.48973 * 98.43052 * 18 13 12 21 21 N 1.46496 * 109.47205 * 185.00161 * 20 18 13 22 22 C 1.36945 * 119.99718 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09005 * 109.47494 * 299.99951 * 1 2 3 31 31 H 1.09000 * 109.47573 * 60.00428 * 1 2 3 32 32 H 1.09005 * 109.46822 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47401 * 239.99908 * 2 1 3 34 34 H 1.08996 * 109.47422 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46548 * 300.00199 * 3 2 1 36 36 H 1.09007 * 109.47309 * 59.99363 * 3 2 1 37 37 H 1.09003 * 109.46512 * 90.02222 * 7 6 5 38 38 H 1.08992 * 109.47683 * 210.02671 * 7 6 5 39 39 H 1.09004 * 109.47087 * 330.03184 * 7 6 5 40 40 H 1.07996 * 126.29179 * 180.24296 * 8 6 5 41 41 H 0.97002 * 119.99600 * 359.97438 * 12 10 9 42 42 H 1.09005 * 110.03119 * 238.56967 * 15 13 12 43 43 H 1.08999 * 110.03475 * 359.97438 * 15 13 12 44 44 H 1.08998 * 110.49088 * 142.28914 * 16 15 13 45 45 H 1.09004 * 110.48293 * 264.92945 * 16 15 13 46 46 H 1.09006 * 110.75944 * 203.74489 * 17 16 15 47 47 H 1.09001 * 110.75897 * 80.37442 * 17 16 15 48 48 H 1.08997 * 109.46922 * 64.99203 * 20 18 13 49 49 H 1.09000 * 109.46483 * 305.00022 * 20 18 13 50 50 H 0.96996 * 120.00499 * 359.97438 * 21 20 18 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7902 -0.3680 2.4658 6 7 2.4295 -1.2729 3.3206 7 6 2.4019 -1.2332 4.7847 8 6 3.0684 -2.1866 2.5724 9 6 2.8476 -1.8641 1.2485 10 6 3.3610 -2.5912 0.0732 11 8 3.0882 -2.2056 -1.0473 12 7 4.1328 -3.6834 0.2407 13 6 4.6425 -4.4063 -0.9270 14 1 3.9174 -4.3624 -1.7397 15 6 5.9807 -3.7972 -1.3811 16 6 7.0353 -4.9174 -1.2690 17 6 6.2106 -6.2256 -1.3540 18 6 4.9308 -5.8753 -0.5548 19 1 5.1098 -5.9694 0.5163 20 6 3.7692 -6.7742 -0.9832 21 7 4.0107 -8.1410 -0.5144 22 6 3.0992 -9.1275 -0.7813 23 1 2.2021 -8.8977 -1.3370 24 6 3.3283 -10.4226 -0.3377 25 7 4.4214 -10.7025 0.3400 26 14 2.0845 -11.7681 -0.7011 27 1 1.0892 -11.8325 0.3991 28 1 1.3906 -11.4686 -1.9794 29 1 2.7849 -13.0729 -0.8119 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9563 -0.8900 36 1 1.6765 1.9565 0.8900 37 1 1.5558 -1.8166 5.1480 38 1 3.3280 -1.6531 5.1772 39 1 2.3010 -0.2004 5.1184 40 1 3.6504 -3.0192 2.9391 41 1 4.3507 -3.9908 1.1346 42 1 5.9050 -3.4577 -2.4142 43 1 6.2506 -2.9635 -0.7329 44 1 7.7436 -4.8586 -2.0954 45 1 7.5565 -4.8564 -0.3136 46 1 6.7456 -7.0509 -0.8841 47 1 5.9666 -6.4619 -2.3898 48 1 3.6895 -6.7715 -2.0702 49 1 2.8415 -6.4001 -0.5500 50 1 4.8163 -8.3472 -0.0151 51 1 4.5813 -11.6075 0.6503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001715555980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:46 Heat of formation + Delta-G solvation = 27.708149 kcal Electronic energy + Delta-G solvation = -29179.579683 eV Core-core repulsion = 25307.879221 eV Total energy + Delta-G solvation = -3871.700462 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.65068 -39.59660 -37.74552 -35.91945 -34.43632 -33.50576 -32.62773 -31.38127 -30.54924 -28.56423 -27.68728 -27.20087 -26.91486 -24.51558 -23.16584 -22.43457 -22.03253 -20.76559 -20.09781 -19.54161 -19.14307 -17.75962 -16.96578 -16.32527 -16.02926 -15.90374 -15.06610 -14.86554 -14.67201 -14.53679 -14.30073 -14.20234 -13.64733 -13.52807 -13.50309 -13.23895 -13.14891 -13.03020 -12.80867 -12.64508 -12.21934 -12.08561 -11.69223 -11.54195 -11.34115 -11.26329 -11.09002 -10.91377 -10.85015 -10.81035 -10.73797 -10.41274 -10.34485 -10.28171 -9.97677 -9.69978 -9.56756 -9.56009 -8.99097 -8.85403 -8.70058 -6.89944 -5.75793 -3.03637 1.33155 2.06126 2.10866 3.34588 3.44262 3.49781 3.50248 3.51440 4.09071 4.34694 4.56906 4.57734 4.74914 4.75473 4.88174 4.89081 5.01007 5.05828 5.08946 5.12606 5.24435 5.41366 5.46936 5.50572 5.57205 5.58879 5.67081 5.72593 5.76434 5.81649 5.83941 5.85813 5.93508 5.97373 6.10168 6.17298 6.19098 6.23191 6.27775 6.33975 6.45734 6.55769 6.56276 6.59035 6.70103 6.82253 6.95760 7.39931 7.68238 7.72258 8.40607 8.43670 9.54965 10.12991 10.48101 11.47217 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.002713 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.625428 B =10319.255103 C =11081.859214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.138 4.138 4 C 0.142 3.858 5 N -0.298 5.298 6 N -0.363 5.363 7 C 0.097 3.903 8 C 0.099 3.901 9 C -0.285 4.285 10 C 0.595 3.405 11 O -0.543 6.543 12 N -0.718 5.718 13 C 0.149 3.851 14 H 0.094 0.906 15 C -0.131 4.131 16 C -0.125 4.125 17 C -0.111 4.111 18 C -0.101 4.101 19 H 0.078 0.922 20 C 0.161 3.839 21 N -0.731 5.731 22 C -0.236 4.236 23 H 0.069 0.931 24 C -0.015 4.015 25 N -0.935 5.935 26 Si 0.906 3.094 27 H -0.291 1.291 28 H -0.282 1.282 29 H -0.292 1.292 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.055 0.945 33 H 0.119 0.881 34 H 0.053 0.947 35 H 0.061 0.939 36 H 0.055 0.945 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.183 0.817 41 H 0.395 0.605 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.021 0.979 49 H 0.018 0.982 50 H 0.383 0.617 51 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 23.200 6.336 24.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.052 4.052 3 C -0.196 4.196 4 C -0.026 4.026 5 N -0.119 5.119 6 N -0.141 5.141 7 C -0.044 4.044 8 C -0.053 4.053 9 C -0.300 4.300 10 C 0.382 3.618 11 O -0.421 6.421 12 N -0.368 5.368 13 C 0.044 3.956 14 H 0.112 0.888 15 C -0.169 4.169 16 C -0.163 4.163 17 C -0.148 4.148 18 C -0.121 4.121 19 H 0.096 0.904 20 C 0.033 3.967 21 N -0.375 5.375 22 C -0.367 4.367 23 H 0.087 0.913 24 C -0.211 4.211 25 N -0.584 5.584 26 Si 0.737 3.263 27 H -0.218 1.218 28 H -0.207 1.207 29 H -0.218 1.218 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.074 0.926 33 H 0.137 0.863 34 H 0.072 0.928 35 H 0.080 0.920 36 H 0.075 0.925 37 H 0.098 0.902 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.200 0.800 41 H 0.229 0.771 42 H 0.087 0.913 43 H 0.082 0.918 44 H 0.081 0.919 45 H 0.080 0.920 46 H 0.092 0.908 47 H 0.090 0.910 48 H 0.039 0.961 49 H 0.036 0.964 50 H 0.217 0.783 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.019 24.225 6.421 25.061 hybrid contribution 0.156 -1.815 0.308 1.848 sum 0.138 22.410 6.729 23.399 Atomic orbital electron populations 1.21778 0.93944 1.02093 1.01910 1.19991 0.95960 0.95612 0.93605 1.21771 1.01047 0.94850 1.01927 1.22394 0.93856 0.93034 0.93333 1.77140 1.20166 1.14428 1.00175 1.48307 1.38009 1.20684 1.07077 1.21983 1.03864 1.05007 0.73529 1.23109 0.96504 0.94594 0.91046 1.20299 1.13515 1.03664 0.92544 1.17227 0.77324 0.79645 0.87572 1.90684 1.59241 1.67182 1.25013 1.46011 1.52249 1.28705 1.09833 1.21678 0.95398 0.90338 0.88205 0.88785 1.22543 0.94667 0.98073 1.01661 1.22385 0.97417 0.95145 1.01320 1.22454 0.94899 0.96713 1.00778 1.22425 0.96760 0.92435 1.00448 0.90415 1.20687 0.93829 0.85593 0.96573 1.42328 1.25353 1.03155 1.66644 1.19245 1.00283 0.88529 1.28690 0.91257 1.24715 0.97819 0.97414 1.01105 1.69658 1.26363 1.19649 1.42744 0.86202 0.80474 0.81762 0.77864 1.21803 1.20744 1.21795 0.92536 0.91975 0.92593 0.86340 0.92782 0.92000 0.92540 0.90190 0.89038 0.88959 0.80019 0.77086 0.91348 0.91782 0.91889 0.91967 0.90813 0.91046 0.96090 0.96445 0.78314 0.93598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.48 9.17 37.16 0.34 -1.14 16 2 C -0.03 -0.38 3.26 -91.77 -0.30 -0.67 16 3 C -0.14 -1.39 9.18 37.16 0.34 -1.05 16 4 C 0.14 1.83 5.77 -82.02 -0.47 1.36 16 5 N -0.30 -3.68 12.50 33.90 0.42 -3.25 16 6 N -0.36 -3.50 3.98 -67.60 -0.27 -3.77 16 7 C 0.10 0.49 11.44 59.84 0.68 1.17 16 8 C 0.10 0.95 10.99 -16.56 -0.18 0.77 16 9 C -0.29 -3.60 6.13 -105.07 -0.64 -4.24 16 10 C 0.59 8.43 7.81 -12.52 -0.10 8.33 16 11 O -0.54 -9.21 14.22 5.28 0.08 -9.14 16 12 N -0.72 -8.96 4.97 -53.80 -0.27 -9.23 16 13 C 0.15 2.06 2.82 -66.82 -0.19 1.87 16 14 H 0.09 1.50 7.26 -51.93 -0.38 1.12 16 15 C -0.13 -1.61 6.59 -25.61 -0.17 -1.77 16 16 C -0.12 -1.48 6.83 -25.08 -0.17 -1.65 16 17 C -0.11 -1.62 6.19 -24.74 -0.15 -1.77 16 18 C -0.10 -1.56 2.59 -88.96 -0.23 -1.79 16 19 H 0.08 1.17 7.74 -51.93 -0.40 0.77 16 20 C 0.16 3.23 5.54 -4.04 -0.02 3.21 16 21 N -0.73 -18.25 5.49 -59.91 -0.33 -18.58 16 22 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 23 H 0.07 1.92 7.83 -52.49 -0.41 1.50 16 24 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 25 N -0.94 -28.05 13.06 55.49 0.72 -27.32 16 26 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 27 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.12 1.63 5.60 -51.93 -0.29 1.34 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 39 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.18 1.07 7.46 -52.49 -0.39 0.67 16 41 H 0.39 3.99 7.28 -40.82 -0.30 3.70 16 42 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.76 7.92 -51.93 -0.41 0.35 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 47 H 0.07 1.11 7.97 -51.93 -0.41 0.69 16 48 H 0.02 0.44 8.02 -51.93 -0.42 0.02 16 49 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 50 H 0.38 9.93 7.64 -40.82 -0.31 9.61 16 51 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 LS Contribution 411.90 15.07 6.21 6.21 Total: -1.00 -34.57 411.90 -8.74 -43.31 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -8.78 Total: 8.98 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -1.51 Total: -4.70 kcal Atomic # 7 Polarization: -62.43 SS G_CDS: 0.28 Total: -62.14 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.08 Total: -9.14 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.57 -8.74 -43.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715555980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.019 kcal (2) G-P(sol) polarization free energy of solvation -34.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds