Wall clock time and date at job start Tue Mar 31 2020 19:40:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.50709 * 109.47190 * 119.99373 * 2 1 3 5 5 N 1.30445 * 125.99029 * 300.00683 * 4 2 1 6 6 N 1.39934 * 108.89757 * 179.97438 * 5 4 2 7 7 C 1.46494 * 125.75639 * 179.97438 * 6 5 4 8 8 C 1.34267 * 108.48980 * 359.74906 * 6 5 4 9 9 C 1.38043 * 107.41552 * 0.39495 * 8 6 5 10 10 C 1.47431 * 126.41481 * 179.87044 * 9 8 6 11 11 O 1.21600 * 120.00226 * 179.68884 * 10 9 8 12 12 N 1.34780 * 119.99823 * 359.69011 * 10 9 8 13 13 C 1.46494 * 120.00106 * 179.97438 * 12 10 9 14 14 H 1.08999 * 110.05803 * 326.41827 * 13 12 10 15 15 C 1.53878 * 110.03020 * 87.83440 * 13 12 10 16 16 C 1.54261 * 106.60005 * 119.28726 * 15 13 12 17 17 C 1.54884 * 104.19738 * 23.60840 * 16 15 13 18 18 C 1.54261 * 110.03306 * 204.99834 * 13 12 10 19 19 H 1.09004 * 110.48945 * 335.91560 * 18 13 12 20 20 C 1.53001 * 110.48973 * 98.43052 * 18 13 12 21 21 N 1.46496 * 109.47205 * 185.00161 * 20 18 13 22 22 C 1.36945 * 119.99718 * 179.97438 * 21 20 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 20 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 20 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47174 * 270.00277 * 26 24 22 28 28 H 1.48501 * 109.47062 * 30.00228 * 26 24 22 29 29 H 1.48499 * 109.46981 * 150.00382 * 26 24 22 30 30 H 1.09005 * 109.47494 * 299.99951 * 1 2 3 31 31 H 1.09000 * 109.47573 * 60.00428 * 1 2 3 32 32 H 1.09005 * 109.46822 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47401 * 239.99908 * 2 1 3 34 34 H 1.08996 * 109.47422 * 179.97438 * 3 2 1 35 35 H 1.09000 * 109.46548 * 300.00199 * 3 2 1 36 36 H 1.09007 * 109.47309 * 59.99363 * 3 2 1 37 37 H 1.09003 * 109.46512 * 90.02222 * 7 6 5 38 38 H 1.08992 * 109.47683 * 210.02671 * 7 6 5 39 39 H 1.09004 * 109.47087 * 330.03184 * 7 6 5 40 40 H 1.07996 * 126.29179 * 180.24296 * 8 6 5 41 41 H 0.97002 * 119.99600 * 359.97438 * 12 10 9 42 42 H 1.09005 * 110.03119 * 238.56967 * 15 13 12 43 43 H 1.08999 * 110.03475 * 359.97438 * 15 13 12 44 44 H 1.08998 * 110.49088 * 142.28914 * 16 15 13 45 45 H 1.09004 * 110.48293 * 264.92945 * 16 15 13 46 46 H 1.09006 * 110.75944 * 203.74489 * 17 16 15 47 47 H 1.09001 * 110.75897 * 80.37442 * 17 16 15 48 48 H 1.08997 * 109.46922 * 64.99203 * 20 18 13 49 49 H 1.09000 * 109.46483 * 305.00022 * 20 18 13 50 50 H 0.96996 * 120.00499 * 359.97438 * 21 20 18 51 51 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7902 -0.3680 2.4658 6 7 2.4295 -1.2729 3.3206 7 6 2.4019 -1.2332 4.7847 8 6 3.0684 -2.1866 2.5724 9 6 2.8476 -1.8641 1.2485 10 6 3.3610 -2.5912 0.0732 11 8 3.0882 -2.2056 -1.0473 12 7 4.1328 -3.6834 0.2407 13 6 4.6425 -4.4063 -0.9270 14 1 3.9174 -4.3624 -1.7397 15 6 5.9807 -3.7972 -1.3811 16 6 7.0353 -4.9174 -1.2690 17 6 6.2106 -6.2256 -1.3540 18 6 4.9308 -5.8753 -0.5548 19 1 5.1098 -5.9694 0.5163 20 6 3.7692 -6.7742 -0.9832 21 7 4.0107 -8.1410 -0.5144 22 6 3.0992 -9.1275 -0.7813 23 1 2.2021 -8.8977 -1.3370 24 6 3.3283 -10.4226 -0.3377 25 7 4.4214 -10.7025 0.3400 26 14 2.0845 -11.7681 -0.7011 27 1 1.0892 -11.8325 0.3991 28 1 1.3906 -11.4686 -1.9794 29 1 2.7849 -13.0729 -0.8119 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 3.1299 1.4426 0.0005 35 1 1.6765 1.9563 -0.8900 36 1 1.6765 1.9565 0.8900 37 1 1.5558 -1.8166 5.1480 38 1 3.3280 -1.6531 5.1772 39 1 2.3010 -0.2004 5.1184 40 1 3.6504 -3.0192 2.9391 41 1 4.3507 -3.9908 1.1346 42 1 5.9050 -3.4577 -2.4142 43 1 6.2506 -2.9635 -0.7329 44 1 7.7436 -4.8586 -2.0954 45 1 7.5565 -4.8564 -0.3136 46 1 6.7456 -7.0509 -0.8841 47 1 5.9666 -6.4619 -2.3898 48 1 3.6895 -6.7715 -2.0702 49 1 2.8415 -6.4001 -0.5500 50 1 4.8163 -8.3472 -0.0151 51 1 4.5813 -11.6075 0.6503 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001715555980.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:40:45 Heat of formation + Delta-G solvation = 5.284849 kcal Electronic energy + Delta-G solvation = -29180.552031 eV Core-core repulsion = 25307.879221 eV Total energy + Delta-G solvation = -3872.672809 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.48327 -40.71201 -38.94078 -36.77811 -36.26338 -34.64492 -33.36538 -33.26244 -31.43419 -30.17243 -28.63926 -28.03297 -27.68726 -26.30056 -24.35513 -23.60517 -23.17992 -21.80791 -21.25689 -20.64475 -20.06859 -19.23871 -18.42176 -17.49109 -16.93611 -16.66282 -16.57423 -16.11297 -15.74144 -15.56347 -15.40456 -15.28443 -15.09425 -15.04744 -14.63874 -14.43117 -14.28076 -14.03199 -13.53124 -13.44236 -13.33029 -13.14779 -12.98084 -12.86996 -12.73118 -12.45053 -12.38014 -12.15586 -12.11548 -11.96732 -11.91855 -11.83095 -11.73493 -11.58007 -11.56212 -11.38682 -10.92749 -10.65463 -10.36563 -10.05472 -9.58591 -8.98583 -7.95149 -5.23030 0.53445 1.12251 1.46649 1.47348 1.48161 1.56971 2.30919 2.48782 2.55985 3.34859 3.38016 3.50422 3.65331 3.73066 3.94971 3.96634 4.09051 4.16501 4.26075 4.27410 4.39723 4.43651 4.45282 4.52806 4.59675 4.60511 4.63171 4.67072 4.70364 4.71081 4.78146 4.79571 4.93632 4.96117 5.02931 5.05906 5.10085 5.16830 5.23645 5.29094 5.32566 5.32889 5.36998 5.48173 5.54011 5.57849 5.70804 5.91555 6.27761 6.53172 6.71936 7.34830 7.37184 8.09603 8.35723 9.27993 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011470 B = 0.002713 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2440.625428 B =10319.255103 C =11081.859214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.036 4.036 3 C -0.130 4.130 4 C 0.126 3.874 5 N -0.320 5.320 6 N -0.359 5.359 7 C 0.086 3.914 8 C 0.119 3.881 9 C -0.320 4.320 10 C 0.593 3.407 11 O -0.580 6.580 12 N -0.708 5.708 13 C 0.156 3.844 14 H 0.069 0.931 15 C -0.123 4.123 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.089 4.089 19 H 0.087 0.913 20 C 0.162 3.838 21 N -0.738 5.738 22 C -0.247 4.247 23 H 0.068 0.932 24 C -0.070 4.070 25 N -0.965 5.965 26 Si 0.969 3.031 27 H -0.286 1.286 28 H -0.274 1.274 29 H -0.293 1.293 30 H 0.058 0.942 31 H 0.077 0.923 32 H 0.040 0.960 33 H 0.096 0.904 34 H 0.046 0.954 35 H 0.076 0.924 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.123 0.877 39 H 0.097 0.903 40 H 0.222 0.778 41 H 0.409 0.591 42 H 0.066 0.934 43 H 0.074 0.926 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.062 0.938 47 H 0.058 0.942 48 H 0.013 0.987 49 H 0.009 0.991 50 H 0.377 0.623 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.423 23.846 7.799 25.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.056 4.056 3 C -0.188 4.188 4 C -0.041 4.041 5 N -0.141 5.141 6 N -0.136 5.136 7 C -0.053 4.053 8 C -0.035 4.035 9 C -0.335 4.335 10 C 0.383 3.617 11 O -0.461 6.461 12 N -0.359 5.359 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.161 4.161 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.108 4.108 19 H 0.105 0.895 20 C 0.036 3.964 21 N -0.381 5.381 22 C -0.379 4.379 23 H 0.086 0.914 24 C -0.263 4.263 25 N -0.616 5.616 26 Si 0.798 3.202 27 H -0.213 1.213 28 H -0.199 1.199 29 H -0.219 1.219 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.065 0.935 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.142 0.858 39 H 0.115 0.885 40 H 0.238 0.762 41 H 0.245 0.755 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.096 0.904 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.076 0.924 48 H 0.030 0.970 49 H 0.027 0.973 50 H 0.210 0.790 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 0.473 24.904 7.911 26.134 hybrid contribution -0.037 -1.993 -0.089 1.995 sum 0.436 22.911 7.822 24.213 Atomic orbital electron populations 1.21722 0.93262 1.01324 1.02746 1.19967 0.96554 0.96337 0.92730 1.21701 1.00507 0.93850 1.02698 1.22556 0.94266 0.93486 0.93803 1.77072 1.21134 1.15694 1.00222 1.48714 1.36666 1.19737 1.08489 1.22403 1.06055 1.05961 0.70839 1.23623 0.95232 0.94700 0.89907 1.20288 1.15406 1.04476 0.93302 1.17487 0.76933 0.79685 0.87644 1.90664 1.60626 1.68259 1.26548 1.45859 1.51824 1.28115 1.10122 1.21453 0.95848 0.89562 0.88053 0.91286 1.22467 0.93550 0.98385 1.01737 1.22313 0.97002 0.92651 1.02881 1.22408 0.94857 0.98035 0.99611 1.22263 0.95217 0.92353 1.00983 0.89474 1.20767 0.95554 0.84331 0.95790 1.42455 1.24597 1.04460 1.66566 1.19579 1.00650 0.89544 1.28112 0.91395 1.25478 0.99742 0.99522 1.01521 1.69792 1.27988 1.19874 1.43925 0.85205 0.78282 0.78751 0.77927 1.21344 1.19880 1.21904 0.92299 0.90443 0.94106 0.88594 0.93489 0.90530 0.92357 0.89181 0.85842 0.88468 0.76151 0.75476 0.91531 0.90757 0.90443 0.90309 0.91970 0.92353 0.96954 0.97304 0.79013 0.93911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.87 9.17 71.98 0.66 -2.21 16 2 C -0.04 -0.87 3.26 -11.54 -0.04 -0.91 16 3 C -0.13 -2.60 9.18 71.98 0.66 -1.94 16 4 C 0.13 3.26 5.77 43.52 0.25 3.51 16 5 N -0.32 -7.62 12.50 -46.67 -0.58 -8.20 16 6 N -0.36 -6.14 3.98 -367.79 -1.46 -7.60 16 7 C 0.09 0.61 11.44 127.77 1.46 2.07 16 8 C 0.12 1.99 10.99 84.27 0.93 2.92 16 9 C -0.32 -7.88 6.13 -20.15 -0.12 -8.00 16 10 C 0.59 16.81 7.81 86.66 0.68 17.49 16 11 O -0.58 -20.38 14.22 -4.03 -0.06 -20.44 16 12 N -0.71 -16.98 4.97 -442.37 -2.20 -19.18 16 13 C 0.16 4.25 2.82 45.72 0.13 4.38 16 14 H 0.07 2.26 7.26 -2.39 -0.02 2.24 16 15 C -0.12 -2.82 6.59 31.32 0.21 -2.62 16 16 C -0.11 -2.38 6.83 31.67 0.22 -2.16 16 17 C -0.11 -3.18 6.19 31.89 0.20 -2.98 16 18 C -0.09 -2.69 2.59 -9.72 -0.03 -2.72 16 19 H 0.09 2.50 7.74 -2.39 -0.02 2.48 16 20 C 0.16 6.60 5.54 86.38 0.48 7.08 16 21 N -0.74 -37.20 5.49 -343.47 -1.89 -39.08 16 22 C -0.25 -13.95 9.99 84.03 0.84 -13.11 16 23 H 0.07 3.77 7.83 -2.91 -0.02 3.75 16 24 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 25 N -0.97 -58.12 13.06 21.65 0.28 -57.84 16 26 Si 0.97 46.24 29.55 68.60 2.03 48.27 16 27 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 28 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 29 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 30 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 31 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 33 H 0.10 2.79 5.60 -2.39 -0.01 2.78 16 34 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.06 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 38 H 0.12 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.22 1.71 7.46 -2.91 -0.02 1.69 16 41 H 0.41 7.38 7.28 -92.71 -0.67 6.71 16 42 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 43 H 0.07 1.60 7.92 -2.39 -0.02 1.58 16 44 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.06 1.93 8.14 -2.38 -0.02 1.91 16 47 H 0.06 1.81 7.97 -2.39 -0.02 1.79 16 48 H 0.01 0.53 8.02 -2.39 -0.02 0.51 16 49 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 50 H 0.38 19.73 7.64 -92.71 -0.71 19.02 16 51 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 Total: -1.00 -75.96 411.90 2.65 -73.31 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.46 Total: 33.48 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: 6.98 Total: -2.73 kcal Atomic # 7 Polarization: -126.05 SS G_CDS: -5.85 Total: -131.90 kcal Atomic # 8 Polarization: -20.38 SS G_CDS: -0.06 Total: -20.44 kcal Atomic # 14 Polarization: 46.24 SS G_CDS: 2.03 Total: 48.27 kcal Total: -75.96 2.65 -73.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001715555980.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.598 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.314 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds