Wall clock time and date at job start Tue Mar 31 2020 19:28:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47160 * 2 1 4 4 C 1.50690 * 109.47181 * 120.00052 * 2 1 3 5 5 C 1.35366 * 126.38787 * 325.13664 * 4 2 1 6 6 C 1.41497 * 105.50477 * 180.25578 * 5 4 2 7 7 C 1.47712 * 126.51800 * 179.75928 * 6 5 4 8 8 O 1.21571 * 119.99952 * 359.97438 * 7 6 5 9 9 N 1.34782 * 120.00158 * 179.97438 * 7 6 5 10 10 C 1.47019 * 125.64742 * 359.69427 * 9 7 6 11 11 C 1.54316 * 107.27826 * 180.97261 * 10 9 7 12 12 C 1.55159 * 102.86118 * 22.51955 * 11 10 9 13 13 H 1.08998 * 111.03407 * 82.39910 * 12 11 10 14 14 C 1.53000 * 111.00089 * 206.23078 * 12 11 10 15 15 C 1.53009 * 109.46737 * 178.65325 * 14 12 11 16 16 N 1.46498 * 109.47001 * 180.02562 * 15 14 12 17 17 C 1.36930 * 120.00109 * 180.02562 * 16 15 14 18 18 H 1.08003 * 120.00145 * 0.02562 * 17 16 15 19 19 C 1.38818 * 120.00174 * 179.97438 * 17 16 15 20 20 N 1.31613 * 119.99928 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99830 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47077 * 90.00050 * 21 19 17 23 23 H 1.48493 * 109.47115 * 209.99704 * 21 19 17 24 24 H 1.48496 * 109.47545 * 330.00089 * 21 19 17 25 25 C 1.47424 * 125.64800 * 180.02562 * 9 7 6 26 26 N 1.31802 * 106.96532 * 359.76711 * 6 5 4 27 27 N 1.28466 * 110.07228 * 359.97438 * 26 6 5 28 28 C 1.46506 * 124.88356 * 179.97438 * 27 26 6 29 29 H 1.09002 * 109.47358 * 300.00372 * 1 2 3 30 30 H 1.09007 * 109.47307 * 60.00057 * 1 2 3 31 31 H 1.08996 * 109.47383 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.47035 * 240.00068 * 2 1 3 33 33 H 1.09007 * 109.47487 * 300.00101 * 3 2 1 34 34 H 1.09003 * 109.47091 * 60.00102 * 3 2 1 35 35 H 1.08997 * 109.47369 * 180.02562 * 3 2 1 36 36 H 1.07997 * 127.24798 * 0.02562 * 5 4 2 37 37 H 1.09007 * 109.88175 * 300.51195 * 10 9 7 38 38 H 1.08994 * 109.88287 * 61.67334 * 10 9 7 39 39 H 1.09003 * 110.91571 * 264.10968 * 11 10 9 40 40 H 1.08999 * 110.74396 * 140.85502 * 11 10 9 41 41 H 1.08999 * 109.47538 * 298.65034 * 14 12 11 42 42 H 1.09001 * 109.47220 * 58.65825 * 14 12 11 43 43 H 1.08999 * 109.46869 * 300.00119 * 15 14 12 44 44 H 1.09001 * 109.46858 * 60.00278 * 15 14 12 45 45 H 0.96996 * 119.99941 * 359.97438 * 16 15 14 46 46 H 0.97001 * 120.00283 * 180.02562 * 20 19 17 47 47 H 1.08997 * 110.36580 * 274.67174 * 25 9 7 48 48 H 1.08996 * 110.36691 * 36.88631 * 25 9 7 49 49 H 1.08999 * 109.46871 * 90.02917 * 28 27 26 50 50 H 1.08994 * 109.46947 * 210.02625 * 28 27 26 51 51 H 1.08997 * 109.47271 * 330.03142 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 6 1.4570 -0.6985 2.4556 6 6 2.2912 -1.4975 3.2729 7 6 2.0943 -1.7931 4.7067 8 8 1.1374 -1.3306 5.2969 9 7 2.9756 -2.5756 5.3607 10 6 4.1673 -3.2025 4.7706 11 6 4.8542 -4.0201 5.8846 12 6 3.6995 -4.2727 6.8897 13 1 3.0906 -5.1223 6.5805 14 6 4.2403 -4.4760 8.3064 15 6 3.0728 -4.6884 9.2723 16 7 3.5906 -4.8825 10.6289 17 6 2.7247 -5.0927 11.6687 18 1 1.6601 -5.1159 11.4886 19 6 3.2154 -5.2772 12.9541 20 7 4.5128 -5.2494 13.1735 21 14 2.0340 -5.5633 14.3725 22 1 1.7872 -7.0197 14.5251 23 1 2.6254 -5.0277 15.6249 24 1 0.7504 -4.8701 14.0953 25 6 2.9005 -2.9500 6.7846 26 7 3.2773 -1.9278 2.5116 27 7 3.1386 -1.4799 1.3156 28 6 4.0532 -1.7582 0.2054 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6767 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 0.5538 -0.1841 2.7487 37 1 3.8734 -3.8607 3.9528 38 1 4.8476 -2.4338 4.4042 39 1 5.6538 -3.4456 6.3522 40 1 5.2369 -4.9622 5.4920 41 1 4.8909 -5.3504 8.3250 42 1 4.8066 -3.5952 8.6090 43 1 2.4223 -3.8141 9.2537 44 1 2.5066 -5.5693 8.9697 45 1 4.5468 -4.8628 10.7905 46 1 4.8557 -5.3786 14.0716 47 1 3.3594 -2.1796 7.4042 48 1 1.8635 -3.1067 7.0814 49 1 3.7273 -2.6575 -0.3172 50 1 4.0522 -0.9157 -0.4861 51 1 5.0606 -1.9085 0.5935 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717084924.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:28:14 Heat of formation + Delta-G solvation = 44.271412 kcal Electronic energy + Delta-G solvation = -28419.139812 eV Core-core repulsion = 24548.157587 eV Total energy + Delta-G solvation = -3870.982225 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.02027 -39.85297 -37.65028 -36.25351 -35.05526 -33.83546 -32.84434 -30.98002 -29.96965 -29.41435 -28.20231 -27.68342 -26.75861 -24.63167 -23.26262 -23.12333 -22.14858 -21.18375 -20.42205 -19.99565 -19.00631 -17.42999 -17.03735 -16.82814 -16.62315 -16.04668 -15.36332 -15.02423 -14.79159 -14.55655 -14.27619 -14.20186 -13.87446 -13.57380 -13.46875 -13.27525 -13.15970 -13.11488 -12.92167 -12.76225 -12.67468 -12.52200 -12.17500 -12.04614 -11.74175 -11.60431 -11.41612 -11.28141 -10.98749 -10.92013 -10.77542 -10.56331 -10.38298 -10.27394 -10.10040 -9.91755 -9.60620 -9.37591 -9.21355 -8.80014 -8.58066 -6.84731 -5.70070 -2.98140 1.39610 1.84945 2.10635 2.97582 3.36464 3.48942 3.53891 3.56060 3.90944 4.04084 4.28535 4.41600 4.53039 4.60256 4.62720 4.65689 4.75090 4.77932 4.88166 4.92510 5.03735 5.13940 5.23343 5.26507 5.28899 5.34909 5.44810 5.49482 5.55433 5.60037 5.63779 5.70653 5.71810 5.79223 5.84200 5.90568 5.98500 6.01007 6.09750 6.19313 6.30700 6.33776 6.43282 6.45256 6.51486 6.92731 6.96812 7.47985 7.64267 7.77289 8.17506 8.49308 9.60200 10.19077 10.53669 11.53038 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.026388 B = 0.001865 C = 0.001773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.824065 B =15007.445358 C =15787.761688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C -0.145 4.145 4 C 0.016 3.984 5 C -0.173 4.173 6 C -0.008 4.008 7 C 0.614 3.386 8 O -0.533 6.533 9 N -0.607 5.607 10 C 0.113 3.887 11 C -0.130 4.130 12 C -0.094 4.094 13 H 0.084 0.916 14 C -0.114 4.114 15 C 0.150 3.850 16 N -0.734 5.734 17 C -0.237 4.237 18 H 0.070 0.930 19 C -0.016 4.016 20 N -0.935 5.935 21 Si 0.907 3.093 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.111 3.889 26 N -0.257 5.257 27 N -0.284 5.284 28 C 0.085 3.915 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.160 0.840 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.065 0.935 43 H 0.020 0.980 44 H 0.018 0.982 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.074 0.926 48 H 0.083 0.917 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.017 10.157 -35.585 37.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.044 4.044 3 C -0.203 4.203 4 C -0.108 4.108 5 C -0.201 4.201 6 C -0.168 4.168 7 C 0.401 3.599 8 O -0.408 6.408 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.168 4.168 12 C -0.114 4.114 13 H 0.103 0.897 14 C -0.152 4.152 15 C 0.023 3.977 16 N -0.378 5.378 17 C -0.368 4.368 18 H 0.088 0.912 19 C -0.212 4.212 20 N -0.584 5.584 21 Si 0.738 3.262 22 H -0.218 1.218 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.011 4.011 26 N -0.093 5.093 27 N -0.072 5.072 28 C -0.055 4.055 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.178 0.822 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.084 0.916 43 H 0.038 0.962 44 H 0.036 0.964 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.092 0.908 48 H 0.101 0.899 49 H 0.103 0.897 50 H 0.112 0.888 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 0.321 9.759 -35.278 36.604 hybrid contribution -0.812 0.204 0.781 1.145 sum -0.490 9.963 -34.497 35.910 Atomic orbital electron populations 1.21831 0.92927 1.02663 1.02728 1.19667 0.96900 0.95397 0.92386 1.21864 1.00980 0.94593 1.02833 1.21351 0.91013 1.00296 0.98147 1.21448 1.02899 1.04654 0.91061 1.21811 0.95882 1.04118 0.94971 1.16502 0.81633 0.78290 0.83502 1.90813 1.30140 1.52456 1.67433 1.48330 1.25508 1.48523 1.11638 1.22014 0.86369 0.96527 0.96049 1.22769 0.98008 1.00326 0.95741 1.22338 0.96150 0.96917 0.95969 0.89718 1.21682 0.99181 1.02251 0.92103 1.20696 0.93953 0.97551 0.85524 1.42366 1.06623 1.87031 1.01801 1.19261 0.89870 1.40587 0.87091 0.91176 1.24742 0.95899 1.03087 0.97481 1.69660 1.10776 1.57282 1.20694 0.86179 0.79987 0.77753 0.82252 1.21781 1.21800 1.20741 1.22431 1.02049 0.96285 0.80310 1.73657 1.23652 1.20712 0.91244 1.45350 1.19333 1.34721 1.07783 1.22147 0.93747 1.03286 0.86364 0.91626 0.91734 0.92130 0.90221 0.91641 0.91715 0.92764 0.82214 0.91183 0.91295 0.90333 0.90041 0.91321 0.91585 0.96176 0.96440 0.78348 0.93602 0.90792 0.89885 0.89715 0.88826 0.88397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 8.78 37.16 0.33 -0.37 16 2 C -0.02 -0.12 2.89 -91.78 -0.27 -0.38 16 3 C -0.14 -0.64 9.17 37.16 0.34 -0.30 16 4 C 0.02 0.13 5.84 -82.21 -0.48 -0.35 16 5 C -0.17 -1.94 9.96 -39.37 -0.39 -2.33 16 6 C -0.01 -0.11 6.98 -82.77 -0.58 -0.68 16 7 C 0.61 9.70 7.86 -12.39 -0.10 9.60 16 8 O -0.53 -10.06 17.18 5.30 0.09 -9.97 16 9 N -0.61 -8.64 3.33 -171.70 -0.57 -9.22 16 10 C 0.11 1.29 5.54 -3.07 -0.02 1.27 16 11 C -0.13 -1.40 6.42 -24.90 -0.16 -1.56 16 12 C -0.09 -1.25 3.07 -88.48 -0.27 -1.52 16 13 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 14 C -0.11 -1.83 4.85 -26.73 -0.13 -1.96 16 15 C 0.15 3.12 6.11 -4.04 -0.02 3.10 16 16 N -0.73 -19.32 5.60 -59.90 -0.34 -19.65 16 17 C -0.24 -6.90 9.99 -15.06 -0.15 -7.05 16 18 H 0.07 1.99 7.83 -52.48 -0.41 1.58 16 19 C -0.02 -0.49 5.50 -17.43 -0.10 -0.59 16 20 N -0.94 -28.99 13.06 55.49 0.72 -28.27 16 21 Si 0.91 23.11 29.55 -169.99 -5.02 18.08 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.45 7.11 56.52 0.40 -7.04 16 24 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 25 C 0.11 1.64 5.57 -2.54 -0.01 1.62 16 26 N -0.26 -2.91 9.50 33.42 0.32 -2.59 16 27 N -0.28 -2.39 3.70 -63.85 -0.24 -2.63 16 28 C 0.09 0.31 10.90 59.85 0.65 0.96 16 29 H 0.06 0.36 7.35 -51.93 -0.38 -0.02 16 30 H 0.06 0.22 8.14 -51.92 -0.42 -0.20 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.27 7.42 -51.93 -0.39 -0.12 16 33 H 0.06 0.20 8.14 -51.92 -0.42 -0.23 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.16 1.71 7.47 -52.49 -0.39 1.31 16 37 H 0.07 0.77 7.67 -51.92 -0.40 0.37 16 38 H 0.07 0.76 7.76 -51.93 -0.40 0.35 16 39 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 40 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 41 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.02 0.43 7.46 -51.93 -0.39 0.04 16 44 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.38 10.47 7.67 -40.82 -0.31 10.16 16 46 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 1.13 8.00 -51.93 -0.42 0.71 16 48 H 0.08 1.34 7.96 -51.93 -0.41 0.93 16 49 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 50 H 0.09 0.13 7.43 -51.93 -0.39 -0.26 16 51 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 410.68 15.07 6.19 6.19 Total: -1.00 -36.17 410.68 -9.11 -45.28 By element: Atomic # 1 Polarization: 12.21 SS G_CDS: -8.91 Total: 3.30 kcal Atomic # 6 Polarization: 0.82 SS G_CDS: -1.36 Total: -0.54 kcal Atomic # 7 Polarization: -62.26 SS G_CDS: -0.10 Total: -62.36 kcal Atomic # 8 Polarization: -10.06 SS G_CDS: 0.09 Total: -9.97 kcal Atomic # 14 Polarization: 23.11 SS G_CDS: -5.02 Total: 18.08 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -36.17 -9.11 -45.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717084924.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.555 kcal (2) G-P(sol) polarization free energy of solvation -36.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds