Wall clock time and date at job start Tue Mar 31 2020 20:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46731 * 2 1 4 4 C 1.50701 * 109.46906 * 120.00010 * 2 1 3 5 5 N 1.30493 * 125.64867 * 300.02141 * 4 2 1 6 6 C 1.34134 * 109.25480 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02026 * 0.02562 * 6 5 4 8 8 N 1.35040 * 125.64539 * 120.00195 * 4 2 1 9 9 C 1.46501 * 126.40178 * 0.06760 * 8 4 2 10 10 C 1.50691 * 109.47263 * 84.99936 * 9 8 4 11 11 O 1.21283 * 120.00531 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00137 * 180.02562 * 10 9 8 13 13 C 1.47024 * 125.64463 * 359.68475 * 12 10 9 14 14 C 1.54339 * 107.26466 * 178.85318 * 13 12 10 15 15 C 1.55159 * 103.01769 * 338.13957 * 14 13 12 16 16 H 1.08990 * 111.00887 * 277.22973 * 15 14 13 17 17 C 1.53001 * 111.03199 * 153.39356 * 15 14 13 18 18 C 1.53006 * 109.47055 * 72.79027 * 17 15 14 19 19 N 1.46497 * 109.46948 * 179.97438 * 18 17 15 20 20 C 1.36943 * 119.99778 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31609 * 120.00120 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99860 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47140 * 89.99977 * 24 22 20 26 26 H 1.48494 * 109.46933 * 210.00115 * 24 22 20 27 27 H 1.48500 * 109.47105 * 330.00183 * 24 22 20 28 28 C 1.47421 * 125.65106 * 180.02562 * 12 10 9 29 29 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47156 * 299.99994 * 1 2 3 31 31 H 1.09002 * 109.47303 * 60.00266 * 1 2 3 32 32 H 1.09003 * 109.47163 * 239.99984 * 2 1 3 33 33 H 1.09005 * 109.47223 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47463 * 299.99631 * 3 2 1 35 35 H 1.09003 * 109.47310 * 60.00074 * 3 2 1 36 36 H 1.08002 * 125.98875 * 179.74112 * 6 5 4 37 37 H 1.07996 * 126.59123 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46939 * 204.99959 * 9 8 4 39 39 H 1.08998 * 109.46454 * 324.99490 * 9 8 4 40 40 H 1.09000 * 109.88501 * 298.39953 * 13 12 10 41 41 H 1.08996 * 109.88311 * 59.56636 * 13 12 10 42 42 H 1.09000 * 110.84495 * 219.67514 * 14 13 12 43 43 H 1.08999 * 110.66420 * 96.52206 * 14 13 12 44 44 H 1.08998 * 109.46950 * 192.78580 * 17 15 14 45 45 H 1.08994 * 109.47786 * 312.78938 * 17 15 14 46 46 H 1.09007 * 109.46794 * 299.99849 * 18 17 15 47 47 H 1.08993 * 109.47410 * 59.99451 * 18 17 15 48 48 H 0.96995 * 120.00640 * 359.97438 * 19 18 17 49 49 H 0.96996 * 120.00088 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.36867 * 322.92417 * 28 12 10 51 51 H 1.08991 * 110.36991 * 85.24811 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7856 -0.3622 2.4637 6 6 2.3927 -1.2215 3.2958 7 6 3.0406 -2.1365 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3197 -2.5284 0.0662 10 6 4.5921 -1.8756 -0.4086 11 8 5.0316 -0.9076 0.1753 12 7 5.2414 -2.3666 -1.4827 13 6 4.8251 -3.5319 -2.2768 14 6 5.8524 -3.7005 -3.4162 15 6 6.4813 -2.2868 -3.5318 16 1 5.8589 -1.6308 -4.1403 17 6 7.9034 -2.3624 -4.0910 18 6 7.8475 -2.6960 -5.5832 19 7 9.2092 -2.7679 -6.1188 20 6 9.4100 -3.0556 -7.4425 21 1 8.5645 -3.2300 -8.0915 22 6 10.7002 -3.1232 -7.9502 23 7 10.8932 -3.4002 -9.2222 24 14 12.1625 -2.8209 -6.8278 25 1 12.5984 -4.1065 -6.2256 26 1 13.2791 -2.2395 -7.6154 27 1 11.7725 -1.8766 -5.7502 28 6 6.4905 -1.8287 -2.0517 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.3699 -1.1832 4.3749 37 1 3.6275 -2.9662 2.9151 38 1 3.5211 -3.5661 0.3324 39 1 2.5755 -2.4953 -0.7295 40 1 4.8145 -4.4233 -1.6496 41 1 3.8340 -3.3595 -2.6963 42 1 5.3576 -3.9797 -4.3464 43 1 6.6083 -4.4380 -3.1465 44 1 8.4001 -1.4023 -3.9517 45 1 8.4596 -3.1388 -3.5658 46 1 7.3507 -3.6562 -5.7225 47 1 7.2914 -1.9197 -6.1085 48 1 9.9686 -2.6116 -5.5359 49 1 11.7947 -3.4478 -9.5769 50 1 6.4970 -0.7404 -1.9916 51 1 7.3538 -2.2433 -1.5315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717101840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:56 Heat of formation + Delta-G solvation = 33.520092 kcal Electronic energy + Delta-G solvation = -28621.301835 eV Core-core repulsion = 24749.853398 eV Total energy + Delta-G solvation = -3871.448437 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.49516 -40.38841 -38.14471 -35.65711 -35.45577 -34.36332 -33.16005 -31.30135 -29.90727 -29.29119 -28.77798 -27.43015 -27.14458 -24.06958 -23.20311 -23.11190 -21.69643 -21.40106 -20.45320 -20.19274 -19.14788 -17.90695 -17.64378 -17.54165 -16.58484 -15.83770 -15.53845 -15.20288 -14.72678 -14.63548 -14.55825 -14.39709 -14.09105 -13.91361 -13.68668 -13.57323 -13.29563 -13.19077 -13.10842 -12.86539 -12.70268 -12.42205 -12.40193 -11.91094 -11.81022 -11.71780 -11.48909 -11.39161 -11.28105 -10.94915 -10.83450 -10.71417 -10.57122 -10.51606 -10.18484 -10.16654 -9.76412 -9.63621 -9.07830 -8.93984 -8.58482 -7.28272 -5.81248 -3.17167 1.63974 2.06210 2.21642 2.69288 2.95276 3.33864 3.36533 3.42126 3.84725 4.02804 4.09323 4.24325 4.30695 4.40737 4.42041 4.54974 4.58398 4.71326 4.81544 4.83332 4.93006 5.02038 5.14539 5.20691 5.32797 5.36828 5.37977 5.40188 5.49737 5.52549 5.56166 5.58257 5.60522 5.65693 5.66094 5.80157 5.88067 5.89150 5.96243 6.00735 6.03179 6.06275 6.17739 6.51662 6.64361 6.68598 6.82267 7.02645 7.62730 7.87963 7.94583 8.37731 9.16771 9.89228 10.08575 11.37068 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.001908 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.484486 B =14673.427706 C =14926.333447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.008 4.008 3 C -0.139 4.139 4 C 0.229 3.771 5 N -0.486 5.486 6 C -0.026 4.026 7 C -0.053 4.053 8 N -0.443 5.443 9 C 0.089 3.911 10 C 0.509 3.491 11 O -0.519 6.519 12 N -0.614 5.614 13 C 0.094 3.906 14 C -0.127 4.127 15 C -0.093 4.093 16 H 0.088 0.912 17 C -0.120 4.120 18 C 0.159 3.841 19 N -0.758 5.758 20 C -0.246 4.246 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.934 5.934 24 Si 0.886 3.114 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.277 1.277 28 C 0.110 3.890 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.058 0.942 34 H 0.062 0.938 35 H 0.067 0.933 36 H 0.169 0.831 37 H 0.172 0.828 38 H 0.122 0.878 39 H 0.120 0.880 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.028 0.972 47 H 0.025 0.975 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.080 0.920 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.295 0.323 21.920 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.197 4.197 4 C -0.033 4.033 5 N -0.204 5.204 6 C -0.173 4.173 7 C -0.185 4.185 8 N -0.126 5.126 9 C -0.038 4.038 10 C 0.295 3.705 11 O -0.394 6.394 12 N -0.350 5.350 13 C -0.029 4.029 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.107 0.893 17 C -0.159 4.159 18 C 0.032 3.968 19 N -0.404 5.404 20 C -0.376 4.376 21 H 0.108 0.892 22 C -0.192 4.192 23 N -0.581 5.581 24 Si 0.716 3.284 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.012 4.012 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.187 0.813 37 H 0.189 0.811 38 H 0.140 0.860 39 H 0.138 0.862 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.046 0.954 47 H 0.043 0.957 48 H 0.193 0.807 49 H 0.070 0.930 50 H 0.098 0.902 51 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.574 1.409 22.225 31.006 hybrid contribution 1.881 -0.804 0.450 2.094 sum -19.693 0.605 22.675 30.039 Atomic orbital electron populations 1.21795 0.92959 1.02063 1.02929 1.19541 0.96513 0.96180 0.90559 1.21762 1.01668 0.93777 1.02537 1.23186 0.96330 0.88108 0.95725 1.70183 1.24527 1.26747 0.98904 1.22236 1.01256 0.94268 0.99542 1.22624 1.08150 1.05212 0.82515 1.44868 1.38539 1.23410 1.05810 1.21630 0.95656 0.97472 0.89045 1.20312 0.85581 0.84614 0.79979 1.90807 1.67175 1.26306 1.55108 1.48506 1.26247 1.31330 1.28882 1.22225 0.99290 0.87927 0.93448 1.22756 0.98063 0.97832 0.97862 1.22333 0.98162 0.96549 0.94267 0.89323 1.21728 0.94131 1.02289 0.97703 1.20596 0.87909 0.98257 0.90036 1.42723 1.01883 1.87020 1.08733 1.19054 0.93928 1.40158 0.84437 0.89243 1.24693 0.97050 1.01692 0.95811 1.69696 1.20903 1.55441 1.12103 0.86530 0.83538 0.78018 0.80327 1.21073 1.21683 1.20335 1.22397 0.85584 0.99940 0.93247 0.92838 0.91224 0.91720 0.90736 0.92238 0.91900 0.91390 0.81331 0.81085 0.85987 0.86174 0.91130 0.91044 0.89169 0.89943 0.91488 0.91563 0.95447 0.95667 0.80690 0.93023 0.90197 0.91014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.18 37.16 0.34 -0.65 16 2 C -0.01 -0.07 3.25 -91.77 -0.30 -0.37 16 3 C -0.14 -1.30 9.17 37.15 0.34 -0.96 16 4 C 0.23 2.52 6.40 -155.42 -0.99 1.53 16 5 N -0.49 -6.10 11.25 -10.82 -0.12 -6.22 16 6 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 7 C -0.05 -0.50 11.58 -16.56 -0.19 -0.69 16 8 N -0.44 -4.29 2.24 -115.19 -0.26 -4.54 16 9 C 0.09 0.60 5.36 -5.20 -0.03 0.57 16 10 C 0.51 5.13 7.92 -10.99 -0.09 5.05 16 11 O -0.52 -7.64 16.68 5.56 0.09 -7.55 16 12 N -0.61 -5.38 3.33 -170.51 -0.57 -5.95 16 13 C 0.09 0.56 6.49 -3.05 -0.02 0.54 16 14 C -0.13 -0.99 5.90 -24.89 -0.15 -1.14 16 15 C -0.09 -0.92 3.01 -88.46 -0.27 -1.18 16 16 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 17 C -0.12 -1.57 4.84 -26.73 -0.13 -1.69 16 18 C 0.16 2.79 6.16 -4.04 -0.02 2.77 16 19 N -0.76 -17.47 5.41 -59.90 -0.32 -17.80 16 20 C -0.25 -6.86 10.47 -15.06 -0.16 -7.02 16 21 H 0.09 2.66 8.06 -52.48 -0.42 2.24 16 22 C 0.00 0.10 5.50 -17.43 -0.10 0.00 16 23 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 24 Si 0.89 21.82 27.73 -169.99 -4.71 17.11 16 25 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.28 -6.41 6.52 56.52 0.37 -6.04 16 28 C 0.11 1.11 6.37 -2.52 -0.02 1.09 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.57 6.85 -51.93 -0.36 0.21 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 37 H 0.17 1.10 8.06 -52.49 -0.42 0.67 16 38 H 0.12 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.12 0.53 7.28 -51.93 -0.38 0.15 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 42 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.07 0.85 7.97 -51.93 -0.41 0.43 16 46 H 0.03 0.48 7.75 -51.93 -0.40 0.07 16 47 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 48 H 0.36 8.11 5.53 -40.82 -0.23 7.89 16 49 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 50 H 0.08 0.90 8.04 -51.93 -0.42 0.48 16 51 H 0.07 0.74 8.04 -51.93 -0.42 0.32 16 LS Contribution 412.51 15.07 6.22 6.22 Total: -1.00 -36.62 412.51 -9.84 -46.46 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -8.95 Total: 3.20 kcal Atomic # 6 Polarization: -0.66 SS G_CDS: -1.99 Total: -2.65 kcal Atomic # 7 Polarization: -62.29 SS G_CDS: -0.50 Total: -62.78 kcal Atomic # 8 Polarization: -7.64 SS G_CDS: 0.09 Total: -7.55 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -36.62 -9.84 -46.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717101840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.979 kcal (2) G-P(sol) polarization free energy of solvation -36.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.459 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds