Wall clock time and date at job start Tue Mar 31 2020 20:05:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52994 * 109.46731 * 2 1 4 4 C 1.50701 * 109.46906 * 120.00010 * 2 1 3 5 5 N 1.30493 * 125.64867 * 300.02141 * 4 2 1 6 6 C 1.34134 * 109.25480 * 179.97438 * 5 4 2 7 7 C 1.34669 * 108.02026 * 0.02562 * 6 5 4 8 8 N 1.35040 * 125.64539 * 120.00195 * 4 2 1 9 9 C 1.46501 * 126.40178 * 0.06760 * 8 4 2 10 10 C 1.50691 * 109.47263 * 84.99936 * 9 8 4 11 11 O 1.21283 * 120.00531 * 359.97438 * 10 9 8 12 12 N 1.34779 * 120.00137 * 180.02562 * 10 9 8 13 13 C 1.47024 * 125.64463 * 359.68475 * 12 10 9 14 14 C 1.54339 * 107.26466 * 178.85318 * 13 12 10 15 15 C 1.55159 * 103.01769 * 338.13957 * 14 13 12 16 16 H 1.08990 * 111.00887 * 277.22973 * 15 14 13 17 17 C 1.53001 * 111.03199 * 153.39356 * 15 14 13 18 18 C 1.53006 * 109.47055 * 72.79027 * 17 15 14 19 19 N 1.46497 * 109.46948 * 179.97438 * 18 17 15 20 20 C 1.36943 * 119.99778 * 179.97438 * 19 18 17 21 21 H 1.08005 * 119.99798 * 359.97438 * 20 19 18 22 22 C 1.38814 * 120.00165 * 179.97438 * 20 19 18 23 23 N 1.31609 * 120.00120 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99860 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47140 * 89.99977 * 24 22 20 26 26 H 1.48494 * 109.46933 * 210.00115 * 24 22 20 27 27 H 1.48500 * 109.47105 * 330.00183 * 24 22 20 28 28 C 1.47421 * 125.65106 * 180.02562 * 12 10 9 29 29 H 1.08998 * 109.46700 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47156 * 299.99994 * 1 2 3 31 31 H 1.09002 * 109.47303 * 60.00266 * 1 2 3 32 32 H 1.09003 * 109.47163 * 239.99984 * 2 1 3 33 33 H 1.09005 * 109.47223 * 180.02562 * 3 2 1 34 34 H 1.09002 * 109.47463 * 299.99631 * 3 2 1 35 35 H 1.09003 * 109.47310 * 60.00074 * 3 2 1 36 36 H 1.08002 * 125.98875 * 179.74112 * 6 5 4 37 37 H 1.07996 * 126.59123 * 179.97438 * 7 6 5 38 38 H 1.09001 * 109.46939 * 204.99959 * 9 8 4 39 39 H 1.08998 * 109.46454 * 324.99490 * 9 8 4 40 40 H 1.09000 * 109.88501 * 298.39953 * 13 12 10 41 41 H 1.08996 * 109.88311 * 59.56636 * 13 12 10 42 42 H 1.09000 * 110.84495 * 219.67514 * 14 13 12 43 43 H 1.08999 * 110.66420 * 96.52206 * 14 13 12 44 44 H 1.08998 * 109.46950 * 192.78580 * 17 15 14 45 45 H 1.08994 * 109.47786 * 312.78938 * 17 15 14 46 46 H 1.09007 * 109.46794 * 299.99849 * 18 17 15 47 47 H 1.08993 * 109.47410 * 59.99451 * 18 17 15 48 48 H 0.96995 * 120.00640 * 359.97438 * 19 18 17 49 49 H 0.96996 * 120.00088 * 180.02562 * 23 22 20 50 50 H 1.08999 * 110.36867 * 322.92417 * 28 12 10 51 51 H 1.08991 * 110.36991 * 85.24811 * 28 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2305 5 7 1.7856 -0.3622 2.4637 6 6 2.3927 -1.2215 3.2958 7 6 3.0406 -2.1365 2.5498 8 7 2.8120 -1.8130 1.2395 9 6 3.3197 -2.5284 0.0662 10 6 4.5921 -1.8756 -0.4086 11 8 5.0316 -0.9076 0.1753 12 7 5.2414 -2.3666 -1.4827 13 6 4.8251 -3.5319 -2.2768 14 6 5.8524 -3.7005 -3.4162 15 6 6.4813 -2.2868 -3.5318 16 1 5.8589 -1.6308 -4.1403 17 6 7.9034 -2.3624 -4.0910 18 6 7.8475 -2.6960 -5.5832 19 7 9.2092 -2.7679 -6.1188 20 6 9.4100 -3.0556 -7.4425 21 1 8.5645 -3.2300 -8.0915 22 6 10.7002 -3.1232 -7.9502 23 7 10.8932 -3.4002 -9.2222 24 14 12.1625 -2.8209 -6.8278 25 1 12.5984 -4.1065 -6.2256 26 1 13.2791 -2.2395 -7.6154 27 1 11.7725 -1.8766 -5.7502 28 6 6.4905 -1.8287 -2.0517 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 3.1300 1.4426 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.3699 -1.1832 4.3749 37 1 3.6275 -2.9662 2.9151 38 1 3.5211 -3.5661 0.3324 39 1 2.5755 -2.4953 -0.7295 40 1 4.8145 -4.4233 -1.6496 41 1 3.8340 -3.3595 -2.6963 42 1 5.3576 -3.9797 -4.3464 43 1 6.6083 -4.4380 -3.1465 44 1 8.4001 -1.4023 -3.9517 45 1 8.4596 -3.1388 -3.5658 46 1 7.3507 -3.6562 -5.7225 47 1 7.2914 -1.9197 -6.1085 48 1 9.9686 -2.6116 -5.5359 49 1 11.7947 -3.4478 -9.5769 50 1 6.4970 -0.7404 -1.9916 51 1 7.3538 -2.2433 -1.5315 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717101840.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:05:55 Heat of formation + Delta-G solvation = 10.161688 kcal Electronic energy + Delta-G solvation = -28622.314732 eV Core-core repulsion = 24749.853398 eV Total energy + Delta-G solvation = -3872.461334 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.18754 -41.12276 -38.98954 -36.99988 -36.30687 -35.08981 -34.54109 -33.01827 -30.72059 -30.09757 -29.62809 -28.14432 -28.07484 -25.47766 -24.10025 -23.78512 -23.08266 -22.28829 -21.34930 -20.90411 -19.85728 -19.59827 -18.55304 -18.22989 -17.32854 -16.62598 -16.57141 -16.32201 -15.90886 -15.74111 -15.49519 -15.28303 -15.15750 -14.78299 -14.60693 -14.43440 -14.37065 -14.16210 -13.94996 -13.80842 -13.60953 -13.35229 -13.18816 -13.03881 -12.92802 -12.81389 -12.44593 -12.43156 -12.15873 -12.06537 -11.93355 -11.90068 -11.74741 -11.55727 -11.53443 -11.47367 -10.95114 -10.94351 -10.51178 -9.76989 -9.29730 -9.28989 -8.03158 -5.36524 0.93768 1.36806 1.37881 1.41096 1.48627 1.60789 2.04229 2.19543 2.48109 3.23410 3.28524 3.38536 3.48186 3.63874 3.65283 3.72568 3.76050 4.00390 4.00856 4.09799 4.16930 4.30756 4.32421 4.33439 4.44441 4.53035 4.57358 4.59700 4.70577 4.75164 4.76665 4.83699 4.86517 4.87087 4.92918 4.97201 5.02763 5.05889 5.20685 5.24162 5.28243 5.30163 5.36625 5.39542 5.45205 5.76119 5.84060 6.14399 6.21232 6.37613 6.92618 7.08325 7.15221 7.85621 8.03060 9.18208 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.024459 B = 0.001908 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.484486 B =14673.427706 C =14926.333447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.009 4.009 3 C -0.134 4.134 4 C 0.213 3.787 5 N -0.523 5.523 6 C -0.055 4.055 7 C -0.050 4.050 8 N -0.447 5.447 9 C 0.090 3.910 10 C 0.507 3.493 11 O -0.576 6.576 12 N -0.611 5.611 13 C 0.094 3.906 14 C -0.127 4.127 15 C -0.086 4.086 16 H 0.088 0.912 17 C -0.108 4.108 18 C 0.155 3.845 19 N -0.763 5.763 20 C -0.235 4.235 21 H 0.058 0.942 22 C -0.067 4.067 23 N -0.984 5.984 24 Si 0.956 3.044 25 H -0.276 1.276 26 H -0.298 1.298 27 H -0.252 1.252 28 C 0.112 3.888 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.031 0.969 34 H 0.083 0.917 35 H 0.053 0.947 36 H 0.182 0.818 37 H 0.201 0.799 38 H 0.159 0.841 39 H 0.150 0.850 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.096 0.904 43 H 0.081 0.919 44 H 0.061 0.939 45 H 0.072 0.928 46 H 0.035 0.965 47 H 0.020 0.980 48 H 0.365 0.635 49 H 0.258 0.742 50 H 0.060 0.940 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.264 -1.184 23.224 32.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.192 4.192 4 C -0.049 4.049 5 N -0.242 5.242 6 C -0.202 4.202 7 C -0.182 4.182 8 N -0.129 5.129 9 C -0.035 4.035 10 C 0.295 3.705 11 O -0.455 6.455 12 N -0.344 5.344 13 C -0.027 4.027 14 C -0.164 4.164 15 C -0.106 4.106 16 H 0.107 0.893 17 C -0.146 4.146 18 C 0.029 3.971 19 N -0.409 5.409 20 C -0.366 4.366 21 H 0.076 0.924 22 C -0.259 4.259 23 N -0.634 5.634 24 Si 0.783 3.217 25 H -0.202 1.202 26 H -0.224 1.224 27 H -0.177 1.177 28 C -0.011 4.011 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.101 0.899 32 H 0.108 0.892 33 H 0.051 0.949 34 H 0.101 0.899 35 H 0.073 0.927 36 H 0.199 0.801 37 H 0.218 0.782 38 H 0.177 0.823 39 H 0.168 0.832 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.115 0.885 43 H 0.100 0.900 44 H 0.080 0.920 45 H 0.091 0.909 46 H 0.053 0.947 47 H 0.038 0.962 48 H 0.198 0.802 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -22.590 -0.124 23.551 32.634 hybrid contribution 2.121 -0.340 -0.005 2.148 sum -20.469 -0.464 23.546 31.203 Atomic orbital electron populations 1.21735 0.91707 1.02564 1.02993 1.19656 0.97492 0.95364 0.90397 1.21700 0.99791 0.94850 1.02859 1.23556 0.96719 0.88775 0.95888 1.70124 1.25935 1.28004 1.00112 1.22647 1.02183 0.94872 1.00481 1.23119 1.07264 1.05342 0.82463 1.45055 1.37989 1.23186 1.06680 1.21945 0.94370 0.98290 0.88925 1.20899 0.86229 0.83881 0.79492 1.90794 1.68832 1.28915 1.56971 1.48553 1.25478 1.31769 1.28629 1.22449 0.99690 0.87725 0.92885 1.22771 0.98549 0.96004 0.99107 1.22170 0.96213 0.98365 0.93814 0.89327 1.21575 0.96461 1.02096 0.94500 1.20800 0.85123 0.98379 0.92754 1.42796 1.04343 1.86732 1.07026 1.19062 0.92960 1.38384 0.86189 0.92421 1.25553 1.00382 1.02528 0.97411 1.69881 1.21408 1.57711 1.14428 0.85388 0.79052 0.78554 0.78658 1.20205 1.22443 1.17691 1.22231 0.86520 0.98918 0.93394 0.92093 0.92881 0.89879 0.89162 0.94930 0.89857 0.92750 0.80090 0.78197 0.82332 0.83222 0.88350 0.88404 0.88531 0.90048 0.92037 0.90904 0.94708 0.96204 0.80183 0.93360 0.92105 0.91271 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 9.18 71.98 0.66 -1.02 16 2 C -0.01 -0.15 3.25 -11.54 -0.04 -0.18 16 3 C -0.13 -2.51 9.17 71.98 0.66 -1.85 16 4 C 0.21 4.54 6.40 138.13 0.88 5.42 16 5 N -0.52 -13.28 11.25 -188.13 -2.12 -15.40 16 6 C -0.06 -1.17 11.87 83.52 0.99 -0.18 16 7 C -0.05 -0.86 11.58 83.08 0.96 0.11 16 8 N -0.45 -7.72 2.24 -518.36 -1.16 -8.88 16 9 C 0.09 0.88 5.36 85.63 0.46 1.34 16 10 C 0.51 9.03 7.92 87.65 0.69 9.73 16 11 O -0.58 -16.74 16.68 -3.04 -0.05 -16.79 16 12 N -0.61 -8.89 3.33 -811.75 -2.70 -11.59 16 13 C 0.09 0.68 6.49 86.73 0.56 1.24 16 14 C -0.13 -1.52 5.90 31.79 0.19 -1.33 16 15 C -0.09 -1.49 3.01 -9.39 -0.03 -1.52 16 16 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 17 C -0.11 -2.60 4.84 30.60 0.15 -2.45 16 18 C 0.16 5.23 6.16 86.38 0.53 5.76 16 19 N -0.76 -34.29 5.41 -343.44 -1.86 -36.15 16 20 C -0.23 -13.18 10.47 84.03 0.88 -12.30 16 21 H 0.06 3.53 8.06 -2.91 -0.02 3.51 16 22 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 23 N -0.98 -62.52 13.97 21.65 0.30 -62.21 16 24 Si 0.96 44.78 27.73 68.60 1.90 46.68 16 25 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 26 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 27 H -0.25 -10.63 6.52 99.48 0.65 -9.99 16 28 C 0.11 2.07 6.37 86.86 0.55 2.62 16 29 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.15 6.85 -2.39 -0.02 1.13 16 33 H 0.03 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.18 2.96 8.06 -2.91 -0.02 2.94 16 37 H 0.20 1.99 8.06 -2.91 -0.02 1.97 16 38 H 0.16 0.39 8.14 -2.39 -0.02 0.37 16 39 H 0.15 0.57 7.28 -2.39 -0.02 0.56 16 40 H 0.10 0.27 8.14 -2.39 -0.02 0.25 16 41 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 42 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.08 1.03 7.91 -2.39 -0.02 1.01 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.68 7.97 -2.39 -0.02 1.66 16 46 H 0.03 1.14 7.75 -2.38 -0.02 1.12 16 47 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 48 H 0.37 15.64 5.53 -92.71 -0.51 15.13 16 49 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 50 H 0.06 1.36 8.04 -2.39 -0.02 1.34 16 51 H 0.07 1.32 8.04 -2.39 -0.02 1.30 16 Total: -1.00 -83.51 412.51 3.22 -80.28 By element: Atomic # 1 Polarization: 21.81 SS G_CDS: 0.33 Total: 22.14 kcal Atomic # 6 Polarization: -6.66 SS G_CDS: 8.58 Total: 1.92 kcal Atomic # 7 Polarization: -126.70 SS G_CDS: -7.53 Total: -134.24 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.05 Total: -16.79 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 1.90 Total: 46.68 kcal Total: -83.51 3.22 -80.28 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717101840.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.444 kcal (2) G-P(sol) polarization free energy of solvation -83.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds