Wall clock time and date at job start Tue Mar 31 2020 19:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47049 * 2 1 4 4 C 1.50698 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.35366 * 126.38724 * 275.29150 * 4 3 2 6 6 C 1.41506 * 105.50574 * 180.08574 * 5 4 3 7 7 C 1.47706 * 126.51803 * 179.90127 * 6 5 4 8 8 O 1.21565 * 120.00326 * 359.71768 * 7 6 5 9 9 N 1.34779 * 119.99735 * 179.71359 * 7 6 5 10 10 C 1.46500 * 119.99793 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47092 * 325.00176 * 10 9 7 12 12 C 1.52997 * 109.47204 * 85.00113 * 10 9 7 13 13 C 1.53006 * 109.47164 * 60.00075 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 17 17 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 18 18 C 1.52997 * 109.46975 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47391 * 294.99824 * 18 16 15 20 20 C 1.36939 * 120.00451 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00077 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46497 * 60.00614 * 24 22 20 26 26 H 1.48503 * 109.46948 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47373 * 300.00667 * 24 22 20 28 28 N 1.31815 * 106.96181 * 359.64351 * 6 5 4 29 29 N 1.28466 * 110.07266 * 0.22502 * 28 6 5 30 30 H 0.96999 * 124.88413 * 180.02562 * 29 28 6 31 31 H 1.08993 * 109.47006 * 299.99968 * 1 2 3 32 32 H 1.08994 * 109.46646 * 60.00283 * 1 2 3 33 33 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47320 * 239.99324 * 2 1 3 35 35 H 1.09007 * 109.46757 * 120.00055 * 2 1 3 36 36 H 1.08995 * 109.47612 * 59.99503 * 3 2 1 37 37 H 1.09001 * 109.46995 * 299.99793 * 3 2 1 38 38 H 1.08000 * 127.24720 * 359.97438 * 5 4 3 39 39 H 0.96995 * 119.99934 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47375 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47140 * 300.00127 * 12 10 9 42 42 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 43 43 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 44 44 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 46 46 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 48 48 H 1.09004 * 109.47610 * 54.99797 * 18 16 15 49 49 H 1.09001 * 109.47532 * 174.99616 * 18 16 15 50 50 H 0.97002 * 119.99938 * 0.02562 * 19 18 16 51 51 H 0.97000 * 120.00085 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3496 1.3421 1.0861 6 6 5.6719 1.3905 0.5846 7 6 6.9159 1.3201 1.3778 8 8 6.8603 1.2142 2.5876 9 7 8.1128 1.3731 0.7603 10 6 9.3466 1.3026 1.5470 11 1 9.1994 1.8107 2.5000 12 6 9.7069 -0.1625 1.8005 13 6 9.9136 -0.8758 0.4627 14 6 11.0485 -0.1973 -0.3070 15 6 10.6882 1.2679 -0.5604 16 6 10.4817 1.9811 0.7773 17 1 11.3996 1.9287 1.3626 18 6 10.1208 3.4461 0.5238 19 7 11.2546 4.1263 -0.1069 20 6 11.1636 5.4542 -0.4292 21 1 10.2557 5.9999 -0.2187 22 6 12.2382 6.0987 -1.0263 23 7 13.3445 5.4336 -1.2833 24 14 12.1137 7.9099 -1.4665 25 1 11.8589 8.7018 -0.2363 26 1 13.3859 8.3566 -2.0887 27 1 10.9972 8.1108 -2.4247 28 7 5.5824 1.5049 -0.7255 29 7 4.3486 1.5365 -1.0821 30 1 4.0375 1.6162 -1.9974 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8901 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9562 -0.8900 38 1 4.0449 1.2471 2.1178 39 1 8.1571 1.4579 -0.2049 40 1 10.6247 -0.2150 2.3862 41 1 8.8983 -0.6459 2.3488 42 1 8.9955 -0.8234 -0.1225 43 1 10.1698 -1.9197 0.6433 44 1 11.1955 -0.7051 -1.2602 45 1 11.9665 -0.2497 0.2783 46 1 11.4967 1.7511 -1.1092 47 1 9.7702 1.3204 -1.1457 48 1 9.2538 3.4981 -0.1349 49 1 9.8869 3.9319 1.4711 50 1 12.0700 3.6362 -0.2963 51 1 14.0953 5.8839 -1.7009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722944194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:28 Heat of formation + Delta-G solvation = 14.402491 kcal Electronic energy + Delta-G solvation = -29134.451454 eV Core-core repulsion = 25262.174015 eV Total energy + Delta-G solvation = -3872.277439 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.85262 -40.03541 -37.92343 -35.76016 -34.58597 -33.54212 -32.05812 -31.82804 -31.22988 -29.76151 -29.30546 -26.84317 -25.28585 -24.22186 -22.91036 -22.37727 -22.01016 -21.21478 -20.71673 -20.11345 -18.83165 -17.87419 -17.35827 -16.79870 -15.95502 -15.57630 -15.47978 -15.15731 -14.73004 -14.52720 -14.29381 -13.98244 -13.89369 -13.80334 -13.54757 -13.39249 -13.20769 -12.99050 -12.67254 -12.61994 -12.02002 -11.99666 -11.85721 -11.76046 -11.58509 -11.33458 -11.25849 -10.94072 -10.84855 -10.83108 -10.64988 -10.27860 -10.17623 -9.98224 -9.91434 -9.78144 -9.56990 -9.52493 -9.15487 -8.84481 -8.73653 -6.85915 -5.72034 -2.99723 1.51143 1.93434 2.64367 3.33132 3.46905 3.50471 3.50961 3.52237 4.21153 4.33501 4.48733 4.57364 4.61958 4.85443 4.92165 4.97089 4.98296 5.01449 5.23225 5.24600 5.32199 5.34535 5.42324 5.43548 5.56036 5.58719 5.62500 5.69818 5.71878 5.76676 5.78957 5.82528 5.84336 5.91488 6.13443 6.20093 6.23279 6.24867 6.32341 6.36075 6.46398 6.58227 6.68264 6.75978 6.78035 6.89158 6.97314 7.55935 7.74543 7.83442 8.36222 8.47385 9.58399 10.16948 10.52095 11.50865 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.002769 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.898689 B =10107.752925 C =11845.060625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.050 4.050 4 C 0.013 3.987 5 C -0.175 4.175 6 C -0.007 4.007 7 C 0.602 3.398 8 O -0.538 6.538 9 N -0.700 5.700 10 C 0.154 3.846 11 H 0.089 0.911 12 C -0.128 4.128 13 C -0.116 4.116 14 C -0.120 4.120 15 C -0.111 4.111 16 C -0.101 4.101 17 H 0.086 0.914 18 C 0.159 3.841 19 N -0.730 5.730 20 C -0.236 4.236 21 H 0.068 0.932 22 C -0.015 4.015 23 N -0.934 5.934 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.287 1.287 28 N -0.254 5.254 29 N -0.380 5.380 30 H 0.443 0.557 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.161 0.839 39 H 0.407 0.593 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.078 0.922 47 H 0.055 0.945 48 H 0.019 0.981 49 H 0.018 0.982 50 H 0.384 0.616 51 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.079 -15.482 1.229 26.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.089 4.089 4 C -0.112 4.112 5 C -0.203 4.203 6 C -0.168 4.168 7 C 0.386 3.614 8 O -0.414 6.414 9 N -0.352 5.352 10 C 0.049 3.951 11 H 0.107 0.893 12 C -0.167 4.167 13 C -0.154 4.154 14 C -0.158 4.158 15 C -0.149 4.149 16 C -0.120 4.120 17 H 0.104 0.896 18 C 0.032 3.968 19 N -0.375 5.375 20 C -0.367 4.367 21 H 0.086 0.914 22 C -0.211 4.211 23 N -0.583 5.583 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.214 1.214 28 N -0.090 5.090 29 N -0.094 5.094 30 H 0.288 0.712 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.110 0.890 37 H 0.094 0.906 38 H 0.179 0.821 39 H 0.244 0.756 40 H 0.091 0.909 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.097 0.903 47 H 0.074 0.926 48 H 0.037 0.963 49 H 0.036 0.964 50 H 0.218 0.782 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -21.458 -15.299 1.168 26.379 hybrid contribution -0.371 0.990 -0.683 1.259 sum -21.829 -14.308 0.485 26.105 Atomic orbital electron populations 1.21783 0.95223 1.02032 1.02039 1.21545 0.95998 0.95498 1.02870 1.20218 0.86326 0.98264 1.04112 1.21414 0.94985 1.07445 0.87399 1.21492 0.90458 1.08636 0.99744 1.22014 0.95360 1.09586 0.89869 1.16872 0.81766 0.76436 0.86308 1.90772 1.86855 1.50593 1.13132 1.45979 1.04856 1.72802 1.11554 1.21010 0.82953 0.95732 0.95362 0.89254 1.21906 1.01768 0.95419 0.97557 1.21495 0.98930 0.98570 0.96381 1.21579 0.98248 0.96130 0.99794 1.21536 1.02172 0.94291 0.96879 1.21620 0.97614 0.96025 0.96764 0.89567 1.20653 0.91518 0.89000 0.95677 1.42353 1.13807 1.08623 1.72685 1.19181 0.98806 0.86407 1.32319 0.91414 1.24713 0.96273 0.98064 1.02018 1.69644 1.04324 1.35520 1.48852 0.86280 0.76546 0.85331 0.78114 1.21322 1.21723 1.21396 1.73603 1.01468 1.18787 1.15169 1.43316 1.02957 1.53277 1.09851 0.71226 0.92365 0.92655 0.92439 0.91995 0.91132 0.88981 0.90593 0.82140 0.75601 0.90938 0.91692 0.92271 0.92533 0.92339 0.91908 0.90294 0.92605 0.96313 0.96426 0.78221 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 9.91 37.16 0.37 -0.25 16 2 C -0.12 -0.60 5.92 -26.73 -0.16 -0.76 16 3 C -0.05 -0.27 5.77 -27.89 -0.16 -0.43 16 4 C 0.01 0.11 6.48 -82.20 -0.53 -0.42 16 5 C -0.18 -2.02 10.73 -39.36 -0.42 -2.44 16 6 C -0.01 -0.10 7.13 -82.76 -0.59 -0.69 16 7 C 0.60 9.43 7.79 -12.39 -0.10 9.33 16 8 O -0.54 -9.68 16.59 5.31 0.09 -9.60 16 9 N -0.70 -10.23 3.61 -54.79 -0.20 -10.43 16 10 C 0.15 2.27 2.23 -67.93 -0.15 2.12 16 11 H 0.09 1.44 7.58 -51.93 -0.39 1.05 16 12 C -0.13 -1.64 5.60 -26.73 -0.15 -1.79 16 13 C -0.12 -1.38 5.77 -26.73 -0.15 -1.53 16 14 C -0.12 -1.52 5.92 -26.73 -0.16 -1.68 16 15 C -0.11 -1.70 4.90 -26.73 -0.13 -1.83 16 16 C -0.10 -1.65 2.02 -90.62 -0.18 -1.83 16 17 H 0.09 1.44 8.14 -51.93 -0.42 1.01 16 18 C 0.16 3.30 5.42 -4.04 -0.02 3.28 16 19 N -0.73 -18.64 5.33 -59.91 -0.32 -18.96 16 20 C -0.24 -6.74 9.99 -15.06 -0.15 -6.89 16 21 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -28.45 13.06 55.49 0.72 -27.72 16 24 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 25 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 28 N -0.25 -3.19 11.92 33.42 0.40 -2.79 16 29 N -0.38 -3.41 6.83 33.50 0.23 -3.18 16 30 H 0.44 2.42 8.96 -190.44 -1.71 0.72 16 31 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.05 0.20 8.14 -51.93 -0.42 -0.23 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 34 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 38 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 39 H 0.41 5.84 6.39 -40.82 -0.26 5.58 16 40 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 43 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.08 1.41 7.18 -51.93 -0.37 1.04 16 47 H 0.06 0.84 6.51 -51.93 -0.34 0.50 16 48 H 0.02 0.40 7.61 -51.93 -0.39 0.01 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.38 10.16 6.85 -40.82 -0.28 9.88 16 51 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -33.81 406.16 -10.80 -44.61 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: -10.03 Total: 10.49 kcal Atomic # 6 Polarization: -3.56 SS G_CDS: -2.79 Total: -6.35 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.83 Total: -63.09 kcal Atomic # 8 Polarization: -9.68 SS G_CDS: 0.09 Total: -9.60 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.81 -10.80 -44.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722944194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.009 kcal (2) G-P(sol) polarization free energy of solvation -33.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.606 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds