Wall clock time and date at job start Tue Mar 31 2020 19:57:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52992 * 109.47049 * 2 1 4 4 C 1.50698 * 109.47003 * 179.97438 * 3 2 1 5 5 C 1.35366 * 126.38724 * 275.29150 * 4 3 2 6 6 C 1.41506 * 105.50574 * 180.08574 * 5 4 3 7 7 C 1.47706 * 126.51803 * 179.90127 * 6 5 4 8 8 O 1.21565 * 120.00326 * 359.71768 * 7 6 5 9 9 N 1.34779 * 119.99735 * 179.71359 * 7 6 5 10 10 C 1.46500 * 119.99793 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47092 * 325.00176 * 10 9 7 12 12 C 1.52997 * 109.47204 * 85.00113 * 10 9 7 13 13 C 1.53006 * 109.47164 * 60.00075 * 12 10 9 14 14 C 1.52997 * 109.47127 * 59.99836 * 13 12 10 15 15 C 1.53000 * 109.47060 * 300.00449 * 14 13 12 16 16 C 1.52996 * 109.47328 * 60.00126 * 15 14 13 17 17 H 1.08992 * 109.47554 * 59.99639 * 16 15 14 18 18 C 1.52997 * 109.46975 * 180.02562 * 16 15 14 19 19 N 1.46499 * 109.47391 * 294.99824 * 18 16 15 20 20 C 1.36939 * 120.00451 * 180.02562 * 19 18 16 21 21 H 1.08002 * 119.99755 * 359.97438 * 20 19 18 22 22 C 1.38806 * 120.00077 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00077 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99966 * 179.97438 * 22 20 19 25 25 H 1.48505 * 109.46497 * 60.00614 * 24 22 20 26 26 H 1.48503 * 109.46948 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47373 * 300.00667 * 24 22 20 28 28 N 1.31815 * 106.96181 * 359.64351 * 6 5 4 29 29 N 1.28466 * 110.07266 * 0.22502 * 28 6 5 30 30 H 0.96999 * 124.88413 * 180.02562 * 29 28 6 31 31 H 1.08993 * 109.47006 * 299.99968 * 1 2 3 32 32 H 1.08994 * 109.46646 * 60.00283 * 1 2 3 33 33 H 1.09002 * 109.47207 * 180.02562 * 1 2 3 34 34 H 1.08995 * 109.47320 * 239.99324 * 2 1 3 35 35 H 1.09007 * 109.46757 * 120.00055 * 2 1 3 36 36 H 1.08995 * 109.47612 * 59.99503 * 3 2 1 37 37 H 1.09001 * 109.46995 * 299.99793 * 3 2 1 38 38 H 1.08000 * 127.24720 * 359.97438 * 5 4 3 39 39 H 0.96995 * 119.99934 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47375 * 180.02562 * 12 10 9 41 41 H 1.09000 * 109.47140 * 300.00127 * 12 10 9 42 42 H 1.08998 * 109.46505 * 299.99708 * 13 12 10 43 43 H 1.08996 * 109.46884 * 180.02562 * 13 12 10 44 44 H 1.09002 * 109.47153 * 180.02562 * 14 13 12 45 45 H 1.09001 * 109.46832 * 60.00321 * 14 13 12 46 46 H 1.09004 * 109.46724 * 180.02562 * 15 14 13 47 47 H 1.09001 * 109.47194 * 299.99650 * 15 14 13 48 48 H 1.09004 * 109.47610 * 54.99797 * 18 16 15 49 49 H 1.09001 * 109.47532 * 174.99616 * 18 16 15 50 50 H 0.97002 * 119.99938 * 0.02562 * 19 18 16 51 51 H 0.97000 * 120.00085 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5470 1.4424 0.0006 5 6 4.3496 1.3421 1.0861 6 6 5.6719 1.3905 0.5846 7 6 6.9159 1.3201 1.3778 8 8 6.8603 1.2142 2.5876 9 7 8.1128 1.3731 0.7603 10 6 9.3466 1.3026 1.5470 11 1 9.1994 1.8107 2.5000 12 6 9.7069 -0.1625 1.8005 13 6 9.9136 -0.8758 0.4627 14 6 11.0485 -0.1973 -0.3070 15 6 10.6882 1.2679 -0.5604 16 6 10.4817 1.9811 0.7773 17 1 11.3996 1.9287 1.3626 18 6 10.1208 3.4461 0.5238 19 7 11.2546 4.1263 -0.1069 20 6 11.1636 5.4542 -0.4292 21 1 10.2557 5.9999 -0.2187 22 6 12.2382 6.0987 -1.0263 23 7 13.3445 5.4336 -1.2833 24 14 12.1137 7.9099 -1.4665 25 1 11.8589 8.7018 -0.2363 26 1 13.3859 8.3566 -2.0887 27 1 10.9972 8.1108 -2.4247 28 7 5.5824 1.5049 -0.7255 29 7 4.3486 1.5365 -1.0821 30 1 4.0375 1.6162 -1.9974 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8900 33 1 -0.3634 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8934 -0.5139 0.8901 36 1 1.6767 1.9563 0.8899 37 1 1.6767 1.9562 -0.8900 38 1 4.0449 1.2471 2.1178 39 1 8.1571 1.4579 -0.2049 40 1 10.6247 -0.2150 2.3862 41 1 8.8983 -0.6459 2.3488 42 1 8.9955 -0.8234 -0.1225 43 1 10.1698 -1.9197 0.6433 44 1 11.1955 -0.7051 -1.2602 45 1 11.9665 -0.2497 0.2783 46 1 11.4967 1.7511 -1.1092 47 1 9.7702 1.3204 -1.1457 48 1 9.2538 3.4981 -0.1349 49 1 9.8869 3.9319 1.4711 50 1 12.0700 3.6362 -0.2963 51 1 14.0953 5.8839 -1.7009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722944194.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:57:26 Heat of formation + Delta-G solvation = -7.005857 kcal Electronic energy + Delta-G solvation = -29135.379789 eV Core-core repulsion = 25262.174015 eV Total energy + Delta-G solvation = -3873.205774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.70988 -41.27367 -39.20066 -36.46531 -36.23768 -34.72160 -33.72431 -32.94414 -31.91607 -31.24746 -30.68279 -27.40067 -27.01202 -25.35927 -24.69519 -23.24935 -22.84944 -22.07348 -21.92040 -21.33874 -20.01670 -19.25440 -18.64524 -18.07861 -16.98085 -16.71385 -16.66752 -16.24368 -15.93185 -15.86417 -15.42380 -15.25126 -15.07721 -14.87907 -14.76223 -14.59756 -14.56122 -14.04469 -13.94040 -13.42778 -13.13261 -13.04733 -12.97235 -12.87518 -12.70985 -12.60838 -12.44951 -12.16241 -12.12284 -11.94034 -11.89804 -11.85463 -11.53143 -11.43813 -11.25124 -11.16738 -11.02361 -10.86037 -10.47665 -9.97950 -9.94801 -8.99700 -7.95656 -5.24054 0.50999 1.10321 1.45065 1.48151 1.54441 1.87121 2.25955 2.37023 2.54626 3.36734 3.37566 3.58985 3.65326 3.78848 3.84191 3.97350 4.08295 4.17594 4.22433 4.25784 4.41803 4.45927 4.47751 4.49016 4.56991 4.57749 4.67316 4.70224 4.74514 4.85633 4.91250 4.95029 4.99555 5.01449 5.08527 5.17037 5.23967 5.26680 5.30549 5.32426 5.33900 5.36081 5.45034 5.46174 5.48392 5.51643 5.60456 6.09366 6.26409 6.46540 6.86246 7.16657 7.33249 8.08179 8.34196 9.27248 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.011013 B = 0.002769 C = 0.002363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2541.898689 B =10107.752925 C =11845.060625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.118 4.118 3 C -0.047 4.047 4 C 0.037 3.963 5 C -0.198 4.198 6 C -0.035 4.035 7 C 0.599 3.401 8 O -0.569 6.569 9 N -0.696 5.696 10 C 0.159 3.841 11 H 0.073 0.927 12 C -0.121 4.121 13 C -0.109 4.109 14 C -0.113 4.113 15 C -0.105 4.105 16 C -0.088 4.088 17 H 0.084 0.916 18 C 0.162 3.838 19 N -0.738 5.738 20 C -0.248 4.248 21 H 0.068 0.932 22 C -0.072 4.072 23 N -0.965 5.965 24 Si 0.972 3.028 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.279 1.279 28 N -0.271 5.271 29 N -0.364 5.364 30 H 0.460 0.540 31 H 0.060 0.940 32 H 0.063 0.937 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.101 0.899 37 H 0.099 0.901 38 H 0.162 0.838 39 H 0.409 0.591 40 H 0.084 0.916 41 H 0.061 0.939 42 H 0.056 0.944 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.050 0.950 47 H 0.057 0.943 48 H 0.016 0.984 49 H 0.005 0.995 50 H 0.377 0.623 51 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.952 -16.082 0.376 28.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.086 4.086 4 C -0.089 4.089 5 C -0.226 4.226 6 C -0.195 4.195 7 C 0.385 3.615 8 O -0.447 6.447 9 N -0.347 5.347 10 C 0.054 3.946 11 H 0.091 0.909 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.150 4.150 15 C -0.143 4.143 16 C -0.107 4.107 17 H 0.103 0.897 18 C 0.035 3.965 19 N -0.381 5.381 20 C -0.380 4.380 21 H 0.086 0.914 22 C -0.264 4.264 23 N -0.616 5.616 24 Si 0.801 3.199 25 H -0.207 1.207 26 H -0.218 1.218 27 H -0.205 1.205 28 N -0.108 5.108 29 N -0.081 5.081 30 H 0.308 0.692 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.075 0.925 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.119 0.881 37 H 0.118 0.882 38 H 0.180 0.820 39 H 0.246 0.754 40 H 0.103 0.897 41 H 0.080 0.920 42 H 0.074 0.926 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.085 0.915 46 H 0.069 0.931 47 H 0.075 0.925 48 H 0.034 0.966 49 H 0.023 0.977 50 H 0.210 0.790 51 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -23.359 -15.909 0.299 28.263 hybrid contribution 0.108 1.178 -0.432 1.259 sum -23.251 -14.731 -0.133 27.525 Atomic orbital electron populations 1.21765 0.94260 1.02250 1.02601 1.21506 0.96750 0.95003 1.02382 1.20377 0.83552 0.98910 1.05743 1.21821 0.96337 1.04578 0.86207 1.21671 0.90085 1.10044 1.00828 1.21861 0.95291 1.11814 0.90534 1.17166 0.82471 0.75712 0.86150 1.90738 1.87375 1.52185 1.14421 1.45943 1.04721 1.72511 1.11503 1.20908 0.82418 0.97028 0.94196 0.90928 1.21857 1.02139 0.93545 0.98445 1.21447 0.98394 0.99465 0.95325 1.21526 0.98716 0.93960 1.00793 1.21449 1.01186 0.96011 0.95644 1.21459 0.98115 0.93352 0.97742 0.89748 1.20719 0.90016 0.91416 0.94304 1.42490 1.14728 1.08059 1.72863 1.19527 0.98788 0.87776 1.31876 0.91445 1.25522 0.96069 1.02359 1.02496 1.69795 1.04880 1.37074 1.49814 0.85240 0.76511 0.80225 0.77945 1.20657 1.21768 1.20490 1.73525 1.03199 1.19502 1.14605 1.43416 1.02101 1.51618 1.10938 0.69235 0.92114 0.91789 0.92453 0.91985 0.92226 0.88108 0.88218 0.82005 0.75395 0.89729 0.92036 0.92555 0.90345 0.90983 0.91451 0.93083 0.92466 0.96581 0.97695 0.79017 0.93912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 71.98 0.71 -0.16 16 2 C -0.12 -0.93 5.92 30.59 0.18 -0.75 16 3 C -0.05 -0.37 5.77 29.84 0.17 -0.20 16 4 C 0.04 0.58 6.48 41.40 0.27 0.85 16 5 C -0.20 -4.51 10.73 22.41 0.24 -4.27 16 6 C -0.04 -0.99 7.13 42.46 0.30 -0.68 16 7 C 0.60 19.24 7.79 86.75 0.68 19.92 16 8 O -0.57 -21.15 16.59 -3.92 -0.07 -21.22 16 9 N -0.70 -20.66 3.61 -445.54 -1.61 -22.27 16 10 C 0.16 4.74 2.23 44.99 0.10 4.84 16 11 H 0.07 2.42 7.58 -2.39 -0.02 2.41 16 12 C -0.12 -2.98 5.60 30.60 0.17 -2.81 16 13 C -0.11 -2.37 5.77 30.60 0.18 -2.19 16 14 C -0.11 -2.68 5.92 30.59 0.18 -2.50 16 15 C -0.11 -3.22 4.90 30.59 0.15 -3.07 16 16 C -0.09 -2.90 2.02 -10.80 -0.02 -2.92 16 17 H 0.08 2.84 8.14 -2.39 -0.02 2.83 16 18 C 0.16 6.91 5.42 86.38 0.47 7.37 16 19 N -0.74 -38.60 5.33 -343.45 -1.83 -40.43 16 20 C -0.25 -14.34 9.99 84.03 0.84 -13.50 16 21 H 0.07 3.82 7.83 -2.91 -0.02 3.80 16 22 C -0.07 -4.22 5.50 84.86 0.47 -3.75 16 23 N -0.97 -59.53 13.06 21.65 0.28 -59.24 16 24 Si 0.97 47.13 29.55 68.60 2.03 49.16 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.29 -14.07 7.11 99.48 0.71 -13.36 16 27 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 28 N -0.27 -6.63 11.92 -48.17 -0.57 -7.21 16 29 N -0.36 -5.94 6.83 -47.93 -0.33 -6.27 16 30 H 0.46 3.96 8.96 -219.99 -1.97 1.99 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 36 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 38 H 0.16 3.49 8.06 -2.91 -0.02 3.47 16 39 H 0.41 11.85 6.39 -92.71 -0.59 11.25 16 40 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 41 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 43 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.05 1.86 7.18 -2.39 -0.02 1.84 16 47 H 0.06 1.72 6.51 -2.39 -0.02 1.70 16 48 H 0.02 0.70 7.61 -2.39 -0.02 0.69 16 49 H 0.01 0.23 8.14 -2.39 -0.02 0.21 16 50 H 0.38 20.55 6.85 -92.71 -0.64 19.91 16 51 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 Total: -1.00 -73.62 406.16 0.73 -72.88 By element: Atomic # 1 Polarization: 40.67 SS G_CDS: -2.25 Total: 38.41 kcal Atomic # 6 Polarization: -8.90 SS G_CDS: 5.09 Total: -3.82 kcal Atomic # 7 Polarization: -131.36 SS G_CDS: -4.06 Total: -135.42 kcal Atomic # 8 Polarization: -21.15 SS G_CDS: -0.07 Total: -21.22 kcal Atomic # 14 Polarization: 47.13 SS G_CDS: 2.03 Total: 49.16 kcal Total: -73.62 0.73 -72.88 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722944194.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.876 kcal (2) G-P(sol) polarization free energy of solvation -73.616 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds