Wall clock time and date at job start Tue Mar 31 2020 20:01:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47565 * 2 1 4 4 C 1.50702 * 109.46829 * 239.99792 * 2 1 3 5 5 O 1.21282 * 120.00494 * 243.99768 * 4 2 1 6 6 N 1.34779 * 119.99581 * 64.00131 * 4 2 1 7 7 C 1.46506 * 119.99776 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.47038 * 325.00069 * 7 6 4 9 9 C 1.52998 * 109.47123 * 85.00199 * 7 6 4 10 10 C 1.52996 * 109.47300 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46753 * 299.99575 * 10 9 7 12 12 C 1.53007 * 109.46935 * 60.00309 * 11 10 9 13 13 C 1.52997 * 109.46774 * 299.99435 * 12 11 10 14 14 H 1.08988 * 109.47744 * 300.00150 * 13 12 11 15 15 C 1.53007 * 109.46774 * 179.97438 * 13 12 11 16 16 N 1.46494 * 109.47015 * 65.00323 * 15 13 12 17 17 C 1.36933 * 120.00196 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99636 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00308 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46664 * 89.99916 * 21 19 17 23 23 H 1.48495 * 109.47178 * 209.99895 * 21 19 17 24 24 H 1.48497 * 109.46877 * 330.00420 * 21 19 17 25 25 C 1.50694 * 109.46994 * 120.00565 * 2 1 3 26 26 C 1.34666 * 126.59213 * 233.45611 * 25 2 1 27 27 N 1.34135 * 108.02256 * 179.73266 * 26 25 2 28 28 C 1.30490 * 109.25393 * 359.97438 * 27 26 25 29 29 N 1.35040 * 108.70356 * 0.02562 * 28 27 26 30 30 H 0.97007 * 126.39677 * 180.02562 * 29 28 27 31 31 H 1.09001 * 109.47262 * 300.00154 * 1 2 3 32 32 H 1.09007 * 109.46675 * 59.99198 * 1 2 3 33 33 H 1.08992 * 109.47671 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47150 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47285 * 300.00337 * 3 2 1 36 36 H 1.09003 * 109.46588 * 60.00329 * 3 2 1 37 37 H 0.96998 * 120.00439 * 359.97438 * 6 4 2 38 38 H 1.09005 * 109.46992 * 300.00077 * 9 7 6 39 39 H 1.09001 * 109.47132 * 59.99487 * 9 7 6 40 40 H 1.09003 * 109.47214 * 180.02562 * 10 9 7 41 41 H 1.08993 * 109.47493 * 59.99286 * 10 9 7 42 42 H 1.08998 * 109.47738 * 300.00262 * 11 10 9 43 43 H 1.09001 * 109.46775 * 179.97438 * 11 10 9 44 44 H 1.09000 * 109.46635 * 179.97438 * 12 11 10 45 45 H 1.08996 * 109.46809 * 59.99992 * 12 11 10 46 46 H 1.09004 * 109.46720 * 185.00637 * 15 13 12 47 47 H 1.08995 * 109.46885 * 305.00090 * 15 13 12 48 48 H 0.97006 * 119.99899 * 359.97438 * 16 15 13 49 49 H 0.97004 * 119.99603 * 179.97438 * 20 19 17 50 50 H 1.08005 * 125.99182 * 359.73326 * 26 25 2 51 51 H 1.08004 * 125.65048 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6685 -1.7372 -1.1208 6 7 1.7744 -0.2048 -2.4529 7 6 2.2632 -0.8952 -3.6492 8 1 3.2319 -1.3478 -3.4371 9 6 1.2679 -1.9854 -4.0513 10 6 1.7785 -2.7068 -5.3001 11 6 1.9250 -1.7025 -6.4451 12 6 2.9204 -0.6122 -6.0430 13 6 2.4096 0.1091 -4.7941 14 1 1.4412 0.5618 -5.0064 15 6 3.4053 1.1989 -4.3916 16 7 3.4567 2.2236 -5.4373 17 6 4.2842 3.3055 -5.2957 18 1 4.8992 3.4030 -4.4132 19 6 4.3325 4.2767 -6.2861 20 7 3.5834 4.1576 -7.3618 21 14 5.4608 5.7529 -6.0926 22 1 6.7886 5.4413 -6.6801 23 1 4.8713 6.9218 -6.7936 24 1 5.6195 6.0688 -4.6503 25 6 2.0323 -0.7105 1.2304 26 6 2.9068 -0.2294 2.1344 27 7 3.0863 -1.1662 3.0774 28 6 2.3558 -2.2093 2.7924 29 7 1.6824 -1.9665 1.6474 30 1 1.0654 -2.5693 1.2036 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.2653 0.6161 -2.5408 38 1 1.1638 -2.7011 -3.2357 39 1 0.2992 -1.5327 -4.2632 40 1 1.0692 -3.4832 -5.5868 41 1 2.7470 -3.1594 -5.0878 42 1 0.9565 -1.2497 -6.6575 43 1 2.2892 -2.2163 -7.3347 44 1 3.0250 0.1030 -6.8588 45 1 3.8888 -1.0650 -5.8306 46 1 3.0872 1.6530 -3.4531 47 1 4.3944 0.7587 -4.2654 48 1 2.9046 2.1358 -6.2300 49 1 3.6169 4.8365 -8.0538 50 1 3.3807 0.7407 2.1052 51 1 2.2991 -3.1165 3.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722957321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:04 Heat of formation + Delta-G solvation = 4.937994 kcal Electronic energy + Delta-G solvation = -30111.384033 eV Core-core repulsion = 26238.696183 eV Total energy + Delta-G solvation = -3872.687850 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.30003 -40.27436 -38.41228 -35.54492 -34.64912 -34.10089 -32.50434 -31.91783 -29.74344 -29.41038 -28.63344 -27.53164 -25.30298 -24.18917 -23.06321 -22.45343 -21.53591 -20.85469 -20.66862 -20.14597 -19.53204 -18.21305 -17.19662 -16.68801 -16.22154 -15.27849 -15.01250 -14.88067 -14.54416 -14.42963 -14.27155 -14.19754 -13.95069 -13.78140 -13.57169 -13.39862 -13.11502 -12.85652 -12.75057 -12.54073 -12.41546 -12.37716 -11.94734 -11.80229 -11.58529 -11.49265 -11.13393 -10.91942 -10.89290 -10.75723 -10.41598 -10.25512 -10.14390 -10.13166 -10.05702 -9.98738 -9.70132 -9.62938 -8.96580 -8.85793 -8.48340 -6.93743 -5.78887 -3.07197 1.90721 2.57293 2.99076 3.02407 3.26005 3.42431 3.48144 3.49170 4.22282 4.46355 4.54958 4.58861 4.63069 4.74682 4.81165 4.88635 5.02315 5.20190 5.22763 5.27530 5.29538 5.32410 5.45331 5.50922 5.53005 5.56473 5.58849 5.62477 5.64068 5.69309 5.75393 5.84361 5.91149 6.06449 6.09356 6.14148 6.17152 6.20135 6.24554 6.35607 6.51308 6.52937 6.62330 6.65829 6.75451 6.87904 7.25151 7.50214 7.68689 7.96489 8.18356 8.40247 9.51695 10.09050 10.43840 11.43911 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003367 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.003510 B = 8313.007993 C =10280.198720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 C -0.142 4.142 4 C 0.522 3.478 5 O -0.538 6.538 6 N -0.714 5.714 7 C 0.154 3.846 8 H 0.087 0.913 9 C -0.124 4.124 10 C -0.115 4.115 11 C -0.121 4.121 12 C -0.107 4.107 13 C -0.100 4.100 14 H 0.074 0.926 15 C 0.159 3.841 16 N -0.730 5.730 17 C -0.238 4.238 18 H 0.069 0.931 19 C -0.013 4.013 20 N -0.934 5.934 21 Si 0.905 3.095 22 H -0.290 1.290 23 H -0.292 1.292 24 H -0.282 1.282 25 C 0.010 3.990 26 C -0.018 4.018 27 N -0.495 5.495 28 C 0.181 3.819 29 N -0.553 5.553 30 H 0.417 0.583 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.055 0.945 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.402 0.598 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.059 0.941 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.080 0.920 45 H 0.061 0.939 46 H 0.019 0.981 47 H 0.018 0.982 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.169 0.831 51 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.777 -13.853 13.284 22.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.011 4.011 3 C -0.199 4.199 4 C 0.307 3.693 5 O -0.414 6.414 6 N -0.365 5.365 7 C 0.049 3.951 8 H 0.105 0.895 9 C -0.163 4.163 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.145 4.145 13 C -0.119 4.119 14 H 0.093 0.907 15 C 0.031 3.969 16 N -0.375 5.375 17 C -0.369 4.369 18 H 0.087 0.913 19 C -0.209 4.209 20 N -0.583 5.583 21 Si 0.737 3.263 22 H -0.217 1.217 23 H -0.218 1.218 24 H -0.207 1.207 25 C -0.107 4.107 26 C -0.167 4.167 27 N -0.214 5.214 28 C -0.102 4.102 29 N -0.154 5.154 30 H 0.254 0.746 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.074 0.926 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.237 0.763 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.079 0.921 46 H 0.037 0.963 47 H 0.035 0.965 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.186 0.814 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -9.642 -14.368 14.143 22.348 hybrid contribution -0.554 0.772 -1.205 1.535 sum -10.196 -13.596 12.938 21.359 Atomic orbital electron populations 1.21896 0.91776 1.02431 1.03737 1.19247 0.96870 0.96255 0.88727 1.21890 1.02714 0.91616 1.03723 1.20365 0.79583 0.85002 0.84367 1.90699 1.39709 1.24352 1.86662 1.46078 1.56530 1.28441 1.05407 1.21021 0.97964 0.92475 0.83611 0.89501 1.21875 0.98902 0.97709 0.97793 1.21484 1.01190 0.97779 0.94833 1.21599 1.00000 0.96744 0.97534 1.21494 0.98117 0.97323 0.97582 1.21592 1.00698 0.95499 0.94092 0.90720 1.20658 0.95250 0.88661 0.92290 1.42359 1.51142 1.22834 1.21156 1.19216 1.16377 0.98307 1.03043 0.91292 1.24717 1.00199 0.99148 0.96850 1.69657 1.42983 1.36077 1.09543 0.86212 0.80288 0.82533 0.77308 1.21742 1.21796 1.20745 1.20467 1.04133 0.87203 0.98912 1.22066 1.00941 1.00474 0.93181 1.70273 1.22309 1.01112 1.27689 1.24875 0.95690 1.00662 0.89013 1.43081 1.36626 1.14348 1.21374 0.74585 0.90800 0.90921 0.92628 0.91004 0.90715 0.90641 0.76311 0.92105 0.91928 0.92218 0.91937 0.92017 0.92080 0.90187 0.92064 0.96331 0.96464 0.78240 0.93548 0.81422 0.77829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.03 8.39 37.16 0.31 -0.71 16 2 C -0.01 -0.06 0.85 -156.82 -0.13 -0.19 16 3 C -0.14 -1.30 7.32 37.15 0.27 -1.03 16 4 C 0.52 6.52 6.44 -10.98 -0.07 6.44 16 5 O -0.54 -8.59 15.60 5.56 0.09 -8.50 16 6 N -0.71 -8.36 4.11 -53.80 -0.22 -8.58 16 7 C 0.15 2.01 1.90 -67.93 -0.13 1.88 16 8 H 0.09 1.34 7.58 -51.93 -0.39 0.94 16 9 C -0.12 -1.41 5.49 -26.73 -0.15 -1.56 16 10 C -0.11 -1.25 5.92 -26.73 -0.16 -1.41 16 11 C -0.12 -1.45 5.92 -26.73 -0.16 -1.60 16 12 C -0.11 -1.58 5.08 -26.73 -0.14 -1.72 16 13 C -0.10 -1.48 1.81 -90.62 -0.16 -1.64 16 14 H 0.07 1.11 8.14 -51.94 -0.42 0.69 16 15 C 0.16 3.04 5.56 -4.04 -0.02 3.02 16 16 N -0.73 -17.66 5.33 -59.91 -0.32 -17.98 16 17 C -0.24 -6.52 9.99 -15.06 -0.15 -6.67 16 18 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 19 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 20 N -0.93 -27.61 13.06 55.49 0.72 -26.89 16 21 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.01 0.11 4.95 -81.60 -0.40 -0.30 16 26 C -0.02 -0.23 10.87 -17.81 -0.19 -0.43 16 27 N -0.49 -6.58 11.25 -14.67 -0.16 -6.75 16 28 C 0.18 1.84 13.04 -90.39 -1.18 0.66 16 29 N -0.55 -5.37 6.00 -10.30 -0.06 -5.43 16 30 H 0.42 3.12 8.96 -40.82 -0.37 2.76 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.46 7.84 -51.93 -0.41 0.06 16 33 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.75 7.73 -51.93 -0.40 0.35 16 35 H 0.07 0.65 7.35 -51.93 -0.38 0.27 16 36 H 0.07 0.58 8.12 -51.93 -0.42 0.16 16 37 H 0.40 4.16 7.28 -40.82 -0.30 3.86 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.08 1.38 7.18 -51.93 -0.37 1.01 16 45 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 46 H 0.02 0.35 7.30 -51.93 -0.38 -0.03 16 47 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 48 H 0.38 9.70 6.85 -40.82 -0.28 9.42 16 49 H 0.25 7.32 8.31 -40.82 -0.34 6.98 16 50 H 0.17 1.88 7.29 -52.48 -0.38 1.49 16 51 H 0.21 1.22 8.06 -52.48 -0.42 0.80 16 LS Contribution 402.49 15.07 6.07 6.07 Total: -1.00 -34.07 402.49 -10.17 -44.24 By element: Atomic # 1 Polarization: 21.10 SS G_CDS: -8.70 Total: 12.40 kcal Atomic # 6 Polarization: -3.17 SS G_CDS: -2.56 Total: -5.73 kcal Atomic # 7 Polarization: -65.58 SS G_CDS: -0.04 Total: -65.62 kcal Atomic # 8 Polarization: -8.59 SS G_CDS: 0.09 Total: -8.50 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.07 -10.17 -44.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.183 kcal (2) G-P(sol) polarization free energy of solvation -34.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds