Wall clock time and date at job start Tue Mar 31 2020 20:01:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47565 * 2 1 4 4 C 1.50702 * 109.46829 * 239.99792 * 2 1 3 5 5 O 1.21282 * 120.00494 * 243.99768 * 4 2 1 6 6 N 1.34779 * 119.99581 * 64.00131 * 4 2 1 7 7 C 1.46506 * 119.99776 * 179.97438 * 6 4 2 8 8 H 1.09004 * 109.47038 * 325.00069 * 7 6 4 9 9 C 1.52998 * 109.47123 * 85.00199 * 7 6 4 10 10 C 1.52996 * 109.47300 * 180.02562 * 9 7 6 11 11 C 1.53004 * 109.46753 * 299.99575 * 10 9 7 12 12 C 1.53007 * 109.46935 * 60.00309 * 11 10 9 13 13 C 1.52997 * 109.46774 * 299.99435 * 12 11 10 14 14 H 1.08988 * 109.47744 * 300.00150 * 13 12 11 15 15 C 1.53007 * 109.46774 * 179.97438 * 13 12 11 16 16 N 1.46494 * 109.47015 * 65.00323 * 15 13 12 17 17 C 1.36933 * 120.00196 * 179.97438 * 16 15 13 18 18 H 1.08005 * 119.99636 * 0.02562 * 17 16 15 19 19 C 1.38803 * 120.00308 * 180.02562 * 17 16 15 20 20 N 1.31625 * 120.00057 * 359.97438 * 19 17 16 21 21 Si 1.86808 * 120.00248 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.46664 * 89.99916 * 21 19 17 23 23 H 1.48495 * 109.47178 * 209.99895 * 21 19 17 24 24 H 1.48497 * 109.46877 * 330.00420 * 21 19 17 25 25 C 1.50694 * 109.46994 * 120.00565 * 2 1 3 26 26 C 1.34666 * 126.59213 * 233.45611 * 25 2 1 27 27 N 1.34135 * 108.02256 * 179.73266 * 26 25 2 28 28 C 1.30490 * 109.25393 * 359.97438 * 27 26 25 29 29 N 1.35040 * 108.70356 * 0.02562 * 28 27 26 30 30 H 0.97007 * 126.39677 * 180.02562 * 29 28 27 31 31 H 1.09001 * 109.47262 * 300.00154 * 1 2 3 32 32 H 1.09007 * 109.46675 * 59.99198 * 1 2 3 33 33 H 1.08992 * 109.47671 * 179.97438 * 1 2 3 34 34 H 1.09002 * 109.47150 * 179.97438 * 3 2 1 35 35 H 1.08993 * 109.47285 * 300.00337 * 3 2 1 36 36 H 1.09003 * 109.46588 * 60.00329 * 3 2 1 37 37 H 0.96998 * 120.00439 * 359.97438 * 6 4 2 38 38 H 1.09005 * 109.46992 * 300.00077 * 9 7 6 39 39 H 1.09001 * 109.47132 * 59.99487 * 9 7 6 40 40 H 1.09003 * 109.47214 * 180.02562 * 10 9 7 41 41 H 1.08993 * 109.47493 * 59.99286 * 10 9 7 42 42 H 1.08998 * 109.47738 * 300.00262 * 11 10 9 43 43 H 1.09001 * 109.46775 * 179.97438 * 11 10 9 44 44 H 1.09000 * 109.46635 * 179.97438 * 12 11 10 45 45 H 1.08996 * 109.46809 * 59.99992 * 12 11 10 46 46 H 1.09004 * 109.46720 * 185.00637 * 15 13 12 47 47 H 1.08995 * 109.46885 * 305.00090 * 15 13 12 48 48 H 0.97006 * 119.99899 * 359.97438 * 16 15 13 49 49 H 0.97004 * 119.99603 * 179.97438 * 20 19 17 50 50 H 1.08005 * 125.99182 * 359.73326 * 26 25 2 51 51 H 1.08004 * 125.65048 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 -1.2305 5 8 2.6685 -1.7372 -1.1208 6 7 1.7744 -0.2048 -2.4529 7 6 2.2632 -0.8952 -3.6492 8 1 3.2319 -1.3478 -3.4371 9 6 1.2679 -1.9854 -4.0513 10 6 1.7785 -2.7068 -5.3001 11 6 1.9250 -1.7025 -6.4451 12 6 2.9204 -0.6122 -6.0430 13 6 2.4096 0.1091 -4.7941 14 1 1.4412 0.5618 -5.0064 15 6 3.4053 1.1989 -4.3916 16 7 3.4567 2.2236 -5.4373 17 6 4.2842 3.3055 -5.2957 18 1 4.8992 3.4030 -4.4132 19 6 4.3325 4.2767 -6.2861 20 7 3.5834 4.1576 -7.3618 21 14 5.4608 5.7529 -6.0926 22 1 6.7886 5.4413 -6.6801 23 1 4.8713 6.9218 -6.7936 24 1 5.6195 6.0688 -4.6503 25 6 2.0323 -0.7105 1.2304 26 6 2.9068 -0.2294 2.1344 27 7 3.0863 -1.1662 3.0774 28 6 2.3558 -2.2093 2.7924 29 7 1.6824 -1.9665 1.6474 30 1 1.0654 -2.5693 1.2036 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 3.1301 1.4423 0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9562 0.8901 37 1 1.2653 0.6161 -2.5408 38 1 1.1638 -2.7011 -3.2357 39 1 0.2992 -1.5327 -4.2632 40 1 1.0692 -3.4832 -5.5868 41 1 2.7470 -3.1594 -5.0878 42 1 0.9565 -1.2497 -6.6575 43 1 2.2892 -2.2163 -7.3347 44 1 3.0250 0.1030 -6.8588 45 1 3.8888 -1.0650 -5.8306 46 1 3.0872 1.6530 -3.4531 47 1 4.3944 0.7587 -4.2654 48 1 2.9046 2.1358 -6.2300 49 1 3.6169 4.8365 -8.0538 50 1 3.3807 0.7407 2.1052 51 1 2.2991 -3.1165 3.3757 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722957321.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:02 Heat of formation + Delta-G solvation = -16.421930 kcal Electronic energy + Delta-G solvation = -30112.310269 eV Core-core repulsion = 26238.696183 eV Total energy + Delta-G solvation = -3873.614086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.12774 -41.31226 -39.52400 -36.48837 -36.35087 -35.12201 -33.68091 -33.33649 -31.22278 -30.55300 -29.47179 -28.23044 -26.96607 -25.07217 -24.72139 -23.49576 -22.42512 -21.99818 -21.77969 -21.15342 -20.48445 -19.41031 -18.85725 -17.62300 -17.29309 -16.72735 -16.18208 -16.02784 -15.68404 -15.52752 -15.24282 -15.17618 -15.11529 -14.94877 -14.79526 -14.59806 -14.39846 -14.11948 -13.73052 -13.53171 -13.32201 -13.30525 -13.06814 -12.94615 -12.75453 -12.67354 -12.59078 -12.24628 -12.18640 -12.08714 -11.93689 -11.84986 -11.51091 -11.34460 -11.13692 -11.02091 -10.93454 -10.90784 -10.65900 -9.99728 -9.33442 -8.97621 -7.94572 -5.22361 1.07916 1.47781 1.48818 1.57116 1.59261 2.10771 2.26432 2.33649 2.56077 3.39042 3.45100 3.53860 3.67900 3.79662 3.86926 3.91291 3.93624 4.05325 4.09616 4.25716 4.38624 4.45280 4.49694 4.51922 4.52470 4.56283 4.62867 4.67215 4.69790 4.81146 4.85008 4.87692 4.93032 5.03717 5.11591 5.14490 5.15056 5.18575 5.23822 5.29632 5.30486 5.34474 5.42967 5.48292 5.51058 5.60805 5.77117 6.27973 6.50465 6.57767 7.13727 7.20588 7.35307 8.10414 8.35124 9.28526 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.010705 B = 0.003367 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2615.003510 B = 8313.007993 C =10280.198720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.002 3.998 3 C -0.142 4.142 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.708 5.708 7 C 0.163 3.837 8 H 0.062 0.938 9 C -0.115 4.115 10 C -0.111 4.111 11 C -0.114 4.114 12 C -0.106 4.106 13 C -0.085 4.085 14 H 0.082 0.918 15 C 0.160 3.840 16 N -0.738 5.738 17 C -0.244 4.244 18 H 0.070 0.930 19 C -0.070 4.070 20 N -0.966 5.966 21 Si 0.968 3.032 22 H -0.291 1.291 23 H -0.293 1.293 24 H -0.270 1.270 25 C 0.005 3.995 26 C -0.045 4.045 27 N -0.536 5.536 28 C 0.188 3.812 29 N -0.547 5.547 30 H 0.428 0.572 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.410 0.590 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.070 0.930 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.027 0.973 47 H 0.000 1.000 48 H 0.376 0.624 49 H 0.251 0.749 50 H 0.169 0.831 51 H 0.242 0.758 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.478 -14.619 14.052 23.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.003 4.003 3 C -0.200 4.200 4 C 0.309 3.691 5 O -0.454 6.454 6 N -0.359 5.359 7 C 0.058 3.942 8 H 0.080 0.920 9 C -0.154 4.154 10 C -0.149 4.149 11 C -0.151 4.151 12 C -0.144 4.144 13 C -0.104 4.104 14 H 0.100 0.900 15 C 0.034 3.966 16 N -0.381 5.381 17 C -0.376 4.376 18 H 0.088 0.912 19 C -0.263 4.263 20 N -0.616 5.616 21 Si 0.797 3.203 22 H -0.218 1.218 23 H -0.220 1.220 24 H -0.195 1.195 25 C -0.113 4.113 26 C -0.192 4.192 27 N -0.256 5.256 28 C -0.097 4.097 29 N -0.149 5.149 30 H 0.267 0.733 31 H 0.103 0.897 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.099 0.901 36 H 0.111 0.889 37 H 0.247 0.753 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.069 0.931 46 H 0.045 0.955 47 H 0.018 0.982 48 H 0.209 0.791 49 H 0.060 0.940 50 H 0.186 0.814 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.360 -15.140 14.930 24.107 hybrid contribution 0.031 0.953 -1.400 1.694 sum -11.330 -14.187 13.530 22.642 Atomic orbital electron populations 1.21916 0.89358 1.03258 1.04935 1.19234 0.98626 0.95744 0.86671 1.21916 1.01584 0.91581 1.04879 1.20823 0.78753 0.84534 0.85035 1.90682 1.41380 1.26134 1.87172 1.46013 1.56237 1.28629 1.04972 1.20818 0.97749 0.92384 0.83295 0.92026 1.21803 0.98798 0.96868 0.97906 1.21472 1.01532 0.97859 0.94044 1.21540 0.99289 0.95945 0.98326 1.21436 0.98837 0.97627 0.96494 1.21431 0.99493 0.94580 0.94904 0.89967 1.20763 0.95672 0.88786 0.91410 1.42500 1.50491 1.23160 1.21985 1.19560 1.16230 0.99016 1.02793 0.91238 1.25464 1.02016 1.01930 0.96845 1.69796 1.44664 1.36894 1.10274 0.85229 0.78192 0.79226 0.77663 1.21812 1.21973 1.19512 1.20628 1.03872 0.87799 0.98992 1.22255 1.01912 1.01004 0.94023 1.70239 1.24109 1.02380 1.28861 1.25619 0.94185 1.00932 0.88913 1.43096 1.36568 1.14034 1.21246 0.73273 0.89715 0.89640 0.92015 0.92861 0.90088 0.88948 0.75273 0.92162 0.90341 0.89888 0.92638 0.91174 0.91202 0.93108 0.93085 0.95499 0.98231 0.79080 0.93989 0.81351 0.74181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.39 71.98 0.60 -1.04 16 2 C 0.00 0.03 0.85 -53.68 -0.05 -0.01 16 3 C -0.14 -2.47 7.32 71.98 0.53 -1.94 16 4 C 0.52 12.53 6.44 87.66 0.56 13.09 16 5 O -0.57 -18.11 15.60 -3.04 -0.05 -18.15 16 6 N -0.71 -15.68 4.11 -442.50 -1.82 -17.50 16 7 C 0.16 4.11 1.90 44.99 0.09 4.19 16 8 H 0.06 1.91 7.58 -2.39 -0.02 1.89 16 9 C -0.12 -2.35 5.49 30.59 0.17 -2.19 16 10 C -0.11 -2.17 5.92 30.59 0.18 -1.99 16 11 C -0.11 -2.52 5.92 30.60 0.18 -2.34 16 12 C -0.11 -3.13 5.08 30.60 0.16 -2.98 16 13 C -0.08 -2.49 1.81 -10.79 -0.02 -2.50 16 14 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 15 C 0.16 6.19 5.56 86.38 0.48 6.67 16 16 N -0.74 -36.18 5.33 -343.46 -1.83 -38.01 16 17 C -0.24 -13.45 9.99 84.03 0.84 -12.61 16 18 H 0.07 3.75 7.83 -2.91 -0.02 3.72 16 19 C -0.07 -3.96 5.50 84.86 0.47 -3.49 16 20 N -0.97 -57.76 13.06 21.65 0.28 -57.47 16 21 Si 0.97 45.71 29.55 68.60 2.03 47.74 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 H -0.29 -13.84 7.11 99.48 0.71 -13.14 16 24 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 25 C 0.00 0.10 4.95 40.95 0.20 0.30 16 26 C -0.04 -1.12 10.87 83.52 0.91 -0.21 16 27 N -0.54 -14.08 11.25 -200.31 -2.25 -16.34 16 28 C 0.19 3.54 13.04 180.27 2.35 5.89 16 29 N -0.55 -9.83 6.00 -186.50 -1.12 -10.95 16 30 H 0.43 5.59 8.96 -92.70 -0.83 4.76 16 31 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.82 7.84 -2.38 -0.02 0.80 16 33 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.05 1.12 7.73 -2.39 -0.02 1.10 16 35 H 0.08 1.28 7.35 -2.39 -0.02 1.27 16 36 H 0.09 1.29 8.12 -2.39 -0.02 1.27 16 37 H 0.41 7.73 7.28 -92.71 -0.67 7.05 16 38 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 39 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 40 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.05 1.80 7.18 -2.39 -0.02 1.78 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.57 16 46 H 0.03 1.01 7.30 -2.38 -0.02 0.99 16 47 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 48 H 0.38 19.41 6.85 -92.70 -0.63 18.77 16 49 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 50 H 0.17 3.91 7.29 -2.91 -0.02 3.89 16 51 H 0.24 2.29 8.06 -2.91 -0.02 2.26 16 Total: -1.00 -74.32 402.49 1.69 -72.63 By element: Atomic # 1 Polarization: 40.41 SS G_CDS: -1.20 Total: 39.22 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 7.65 Total: -1.16 kcal Atomic # 7 Polarization: -133.54 SS G_CDS: -6.74 Total: -140.28 kcal Atomic # 8 Polarization: -18.11 SS G_CDS: -0.05 Total: -18.15 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -74.32 1.69 -72.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957321.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.211 kcal (2) G-P(sol) polarization free energy of solvation -74.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.422 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds