Wall clock time and date at job start Tue Mar 31 2020 20:01:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47259 * 120.00019 * 2 1 3 5 5 O 1.21280 * 120.00152 * 116.01340 * 4 2 1 6 6 N 1.34777 * 119.99646 * 296.01167 * 4 2 1 7 7 C 1.46503 * 119.99719 * 179.97438 * 6 4 2 8 8 H 1.09007 * 109.47131 * 34.99967 * 7 6 4 9 9 C 1.52997 * 109.47062 * 275.00200 * 7 6 4 10 10 C 1.53002 * 109.47265 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47208 * 59.99696 * 10 9 7 12 12 C 1.52997 * 109.47256 * 300.00310 * 11 10 9 13 13 C 1.52998 * 109.47171 * 155.00492 * 7 6 4 14 14 H 1.08995 * 109.47157 * 60.00006 * 13 7 6 15 15 C 1.53007 * 109.46757 * 299.99806 * 13 7 6 16 16 N 1.46494 * 109.46948 * 175.00354 * 15 13 7 17 17 C 1.36934 * 120.00398 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99661 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00484 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99993 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00155 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46798 * 90.00058 * 21 19 17 23 23 H 1.48491 * 109.47041 * 210.00010 * 21 19 17 24 24 H 1.48503 * 109.46939 * 330.00146 * 21 19 17 25 25 C 1.50692 * 109.47083 * 240.00317 * 2 1 3 26 26 C 1.34670 * 126.59297 * 126.23939 * 25 2 1 27 27 N 1.34130 * 108.02227 * 179.87190 * 26 25 2 28 28 C 1.30502 * 109.25318 * 0.39737 * 27 26 25 29 29 N 1.35037 * 108.70282 * 359.75198 * 28 27 26 30 30 H 0.96998 * 126.39855 * 180.02562 * 29 28 27 31 31 H 1.09004 * 109.47079 * 300.00150 * 1 2 3 32 32 H 1.09003 * 109.47011 * 59.99781 * 1 2 3 33 33 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47474 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47060 * 300.00384 * 3 2 1 36 36 H 1.08995 * 109.47064 * 59.99805 * 3 2 1 37 37 H 0.96992 * 120.00684 * 0.02562 * 6 4 2 38 38 H 1.08995 * 109.47377 * 300.00061 * 9 7 6 39 39 H 1.09003 * 109.47227 * 60.00109 * 9 7 6 40 40 H 1.09007 * 109.47039 * 299.99834 * 10 9 7 41 41 H 1.08999 * 109.47655 * 180.02562 * 10 9 7 42 42 H 1.09003 * 109.47067 * 179.97438 * 11 10 9 43 43 H 1.09004 * 109.46506 * 60.00123 * 11 10 9 44 44 H 1.08998 * 109.47124 * 300.00111 * 12 11 10 45 45 H 1.09003 * 109.47227 * 179.97438 * 12 11 10 46 46 H 1.09001 * 109.47210 * 294.99804 * 15 13 7 47 47 H 1.08996 * 109.47086 * 54.99950 * 15 13 7 48 48 H 0.97003 * 120.00254 * 359.97438 * 16 15 13 49 49 H 0.97005 * 119.99600 * 180.02562 * 20 19 17 50 50 H 1.07997 * 125.98946 * 0.02562 * 26 25 2 51 51 H 1.07998 * 125.64875 * 179.73562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.6688 -1.7369 1.1206 6 7 1.7744 -0.2049 2.4529 7 6 2.2623 -0.8958 3.6491 8 1 3.2308 -1.3490 3.4374 9 6 1.2662 -1.9855 4.0505 10 6 1.7760 -2.7076 5.2994 11 6 1.9227 -1.7037 6.4447 12 6 2.9188 -0.6140 6.0433 13 6 2.4084 0.1084 4.7941 14 1 1.4399 0.5614 5.0059 15 6 3.4045 1.1982 4.3927 16 7 3.4551 2.2227 5.4385 17 6 4.2827 3.3046 5.2978 18 1 4.8985 3.4022 4.4159 19 6 4.3303 4.2756 6.2885 20 7 5.1263 5.3152 6.1534 21 14 3.2647 4.1072 7.8135 22 1 4.0099 3.3591 8.8578 23 1 2.9160 5.4568 8.3253 24 1 2.0214 3.3716 7.4698 25 6 2.0323 -0.7103 -1.2304 26 6 2.9026 -0.2269 -2.1374 27 7 3.0905 -1.1678 -3.0747 28 6 2.3632 -2.2126 -2.7875 29 7 1.6873 -1.9687 -1.6442 30 1 1.0725 -2.5726 -1.1991 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8899 37 1 1.2651 0.6159 2.5408 38 1 0.2978 -1.5325 4.2622 39 1 1.1621 -2.7010 3.2348 40 1 2.7444 -3.1608 5.0872 41 1 1.0667 -3.4842 5.5852 42 1 2.2855 -2.2182 7.3346 43 1 0.9543 -1.2506 6.6568 44 1 3.8871 -1.0671 5.8310 45 1 3.0230 0.1015 6.8590 46 1 4.3937 0.7579 4.2673 47 1 3.0873 1.6524 3.4540 48 1 2.9018 2.1353 6.2304 49 1 5.1597 5.9936 6.8460 50 1 3.3694 0.7466 -2.1129 51 1 2.3104 -3.1217 -3.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001722957323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:11 Heat of formation + Delta-G solvation = 9.363074 kcal Electronic energy + Delta-G solvation = -30183.123055 eV Core-core repulsion = 26310.627091 eV Total energy + Delta-G solvation = -3872.495964 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.65 seconds Orbital eigenvalues (eV) -42.30658 -40.33928 -38.51787 -35.57123 -34.85023 -34.17962 -32.51052 -31.98394 -30.09820 -29.61931 -28.68372 -27.54185 -25.56348 -24.23490 -22.93188 -22.33916 -21.54868 -20.89907 -20.75379 -20.22924 -19.60536 -18.29639 -17.60049 -16.75154 -16.32774 -15.30946 -15.09276 -14.83715 -14.61126 -14.44785 -14.30091 -14.26382 -14.15075 -13.89435 -13.57445 -13.51653 -13.11711 -12.87013 -12.79327 -12.62339 -12.50586 -12.40690 -12.12694 -11.87504 -11.76404 -11.51181 -11.27625 -11.10578 -11.02895 -10.86498 -10.54004 -10.41308 -10.16733 -10.14254 -10.08898 -10.05353 -9.71200 -9.60584 -9.03354 -8.90245 -8.48889 -7.25862 -5.79286 -3.14984 1.89781 2.53534 2.97466 3.01036 3.22532 3.32713 3.35571 3.41858 4.20801 4.43117 4.55592 4.56274 4.59877 4.63378 4.74230 4.79278 4.90352 5.05982 5.18748 5.20484 5.26623 5.28799 5.40662 5.45102 5.46360 5.48241 5.50826 5.52095 5.55237 5.62572 5.70506 5.73250 5.77987 5.91481 5.96430 6.02087 6.07462 6.11325 6.14175 6.20256 6.38464 6.41775 6.46347 6.61719 6.62503 6.75309 7.24445 7.44491 7.96343 7.97026 8.13745 8.39610 9.18548 9.90682 10.10405 11.39169 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003331 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.853834 B = 8405.028281 C = 9981.872727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.006 4.006 3 C -0.142 4.142 4 C 0.523 3.477 5 O -0.536 6.536 6 N -0.716 5.716 7 C 0.155 3.845 8 H 0.089 0.911 9 C -0.125 4.125 10 C -0.115 4.115 11 C -0.122 4.122 12 C -0.109 4.109 13 C -0.104 4.104 14 H 0.074 0.926 15 C 0.163 3.837 16 N -0.754 5.754 17 C -0.243 4.243 18 H 0.089 0.911 19 C 0.005 3.995 20 N -0.934 5.934 21 Si 0.883 3.117 22 H -0.284 1.284 23 H -0.291 1.291 24 H -0.278 1.278 25 C 0.008 3.992 26 C -0.017 4.017 27 N -0.495 5.495 28 C 0.182 3.818 29 N -0.553 5.553 30 H 0.417 0.583 31 H 0.071 0.929 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.402 0.598 38 H 0.062 0.938 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.027 0.973 47 H 0.027 0.973 48 H 0.360 0.640 49 H 0.259 0.741 50 H 0.169 0.831 51 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.185 -16.667 -10.826 24.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.011 4.011 3 C -0.200 4.200 4 C 0.308 3.692 5 O -0.413 6.413 6 N -0.366 5.366 7 C 0.050 3.950 8 H 0.107 0.893 9 C -0.163 4.163 10 C -0.153 4.153 11 C -0.159 4.159 12 C -0.147 4.147 13 C -0.124 4.124 14 H 0.092 0.908 15 C 0.036 3.964 16 N -0.400 5.400 17 C -0.373 4.373 18 H 0.107 0.893 19 C -0.191 4.191 20 N -0.582 5.582 21 Si 0.714 3.286 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.204 1.204 25 C -0.108 4.108 26 C -0.166 4.166 27 N -0.213 5.213 28 C -0.102 4.102 29 N -0.154 5.154 30 H 0.254 0.746 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.237 0.763 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.045 0.955 47 H 0.045 0.955 48 H 0.193 0.807 49 H 0.069 0.931 50 H 0.186 0.814 51 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -12.990 -17.143 -11.715 24.492 hybrid contribution -1.709 -0.009 2.144 2.742 sum -14.698 -17.153 -9.571 24.533 Atomic orbital electron populations 1.21898 0.91795 1.02401 1.03730 1.19245 0.96839 0.96301 0.88677 1.21896 1.02815 0.91518 1.03745 1.20374 0.79523 0.84979 0.84344 1.90701 1.39598 1.24336 1.86646 1.46064 1.56672 1.28478 1.05392 1.20985 0.98160 0.92331 0.83512 0.89283 1.21881 0.98849 0.97750 0.97843 1.21480 1.01355 0.97729 0.94725 1.21601 0.99833 0.96781 0.97734 1.21524 0.98615 0.97285 0.97272 1.21663 1.00636 0.95729 0.94348 0.90756 1.20637 0.95740 0.88087 0.91931 1.42710 1.51440 1.24603 1.21245 1.19050 1.16175 0.97076 1.05038 0.89274 1.24670 0.99323 0.96876 0.98248 1.69706 1.41201 1.12215 1.35034 0.86569 0.80631 0.76940 0.84491 1.21074 1.21749 1.20403 1.20461 1.04351 0.87102 0.98922 1.22081 1.00895 1.00388 0.93189 1.70281 1.22291 1.00985 1.27788 1.24880 0.95584 1.00673 0.89087 1.43076 1.36698 1.14203 1.21466 0.74618 0.90976 0.90767 0.92650 0.90908 0.90594 0.90741 0.76307 0.91943 0.91935 0.91796 0.92120 0.91977 0.92087 0.91550 0.90913 0.95529 0.95493 0.80677 0.93055 0.81368 0.77832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.99 8.39 37.16 0.31 -0.67 16 2 C -0.01 -0.06 0.85 -156.81 -0.13 -0.19 16 3 C -0.14 -1.29 7.31 37.16 0.27 -1.02 16 4 C 0.52 6.31 6.44 -10.99 -0.07 6.24 16 5 O -0.54 -8.35 15.59 5.56 0.09 -8.26 16 6 N -0.72 -7.94 4.11 -53.80 -0.22 -8.16 16 7 C 0.15 1.90 1.90 -67.93 -0.13 1.77 16 8 H 0.09 1.30 7.58 -51.93 -0.39 0.90 16 9 C -0.12 -1.31 5.49 -26.73 -0.15 -1.46 16 10 C -0.11 -1.15 5.92 -26.73 -0.16 -1.31 16 11 C -0.12 -1.32 5.92 -26.73 -0.16 -1.48 16 12 C -0.11 -1.47 5.08 -26.70 -0.14 -1.60 16 13 C -0.10 -1.44 1.81 -90.59 -0.16 -1.60 16 14 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 15 C 0.16 2.97 5.56 -4.04 -0.02 2.95 16 16 N -0.75 -17.07 5.13 -59.91 -0.31 -17.38 16 17 C -0.24 -6.75 10.47 -15.06 -0.16 -6.90 16 18 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 19 C 0.00 0.13 5.50 -17.43 -0.10 0.04 16 20 N -0.93 -29.03 13.97 55.49 0.78 -28.26 16 21 Si 0.88 21.59 27.74 -169.99 -4.71 16.87 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 24 H -0.28 -6.29 6.52 56.52 0.37 -5.93 16 25 C 0.01 0.09 4.96 -81.60 -0.40 -0.31 16 26 C -0.02 -0.22 10.87 -17.81 -0.19 -0.41 16 27 N -0.49 -6.56 11.25 -14.67 -0.17 -6.73 16 28 C 0.18 1.83 13.04 -90.38 -1.18 0.65 16 29 N -0.55 -5.29 5.99 -10.30 -0.06 -5.35 16 30 H 0.42 3.04 8.96 -40.82 -0.37 2.68 16 31 H 0.07 0.43 7.84 -51.93 -0.41 0.03 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.76 7.74 -51.93 -0.40 0.36 16 35 H 0.08 0.58 8.12 -51.93 -0.42 0.16 16 36 H 0.07 0.63 7.35 -51.93 -0.38 0.25 16 37 H 0.40 3.88 7.28 -40.82 -0.30 3.59 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 45 H 0.07 1.11 7.18 -51.93 -0.37 0.73 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.03 0.49 7.31 -51.93 -0.38 0.11 16 48 H 0.36 7.93 4.72 -40.82 -0.19 7.74 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.17 1.89 7.29 -52.49 -0.38 1.50 16 51 H 0.21 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 399.37 15.07 6.02 6.02 Total: -1.00 -35.19 399.37 -9.82 -45.01 By element: Atomic # 1 Polarization: 20.22 SS G_CDS: -8.66 Total: 11.56 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: -2.56 Total: -5.32 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: 0.02 Total: -65.87 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: 0.09 Total: -8.26 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.71 Total: 16.87 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.19 -9.82 -45.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.371 kcal (2) G-P(sol) polarization free energy of solvation -35.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.008 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.65 seconds