Wall clock time and date at job start Tue Mar 31 2020 20:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53006 * 109.47116 * 2 1 4 4 C 1.50699 * 109.47259 * 120.00019 * 2 1 3 5 5 O 1.21280 * 120.00152 * 116.01340 * 4 2 1 6 6 N 1.34777 * 119.99646 * 296.01167 * 4 2 1 7 7 C 1.46503 * 119.99719 * 179.97438 * 6 4 2 8 8 H 1.09007 * 109.47131 * 34.99967 * 7 6 4 9 9 C 1.52997 * 109.47062 * 275.00200 * 7 6 4 10 10 C 1.53002 * 109.47265 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.47208 * 59.99696 * 10 9 7 12 12 C 1.52997 * 109.47256 * 300.00310 * 11 10 9 13 13 C 1.52998 * 109.47171 * 155.00492 * 7 6 4 14 14 H 1.08995 * 109.47157 * 60.00006 * 13 7 6 15 15 C 1.53007 * 109.46757 * 299.99806 * 13 7 6 16 16 N 1.46494 * 109.46948 * 175.00354 * 15 13 7 17 17 C 1.36934 * 120.00398 * 180.02562 * 16 15 13 18 18 H 1.08000 * 119.99661 * 359.97438 * 17 16 15 19 19 C 1.38808 * 120.00484 * 179.97438 * 17 16 15 20 20 N 1.31624 * 119.99993 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00155 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46798 * 90.00058 * 21 19 17 23 23 H 1.48491 * 109.47041 * 210.00010 * 21 19 17 24 24 H 1.48503 * 109.46939 * 330.00146 * 21 19 17 25 25 C 1.50692 * 109.47083 * 240.00317 * 2 1 3 26 26 C 1.34670 * 126.59297 * 126.23939 * 25 2 1 27 27 N 1.34130 * 108.02227 * 179.87190 * 26 25 2 28 28 C 1.30502 * 109.25318 * 0.39737 * 27 26 25 29 29 N 1.35037 * 108.70282 * 359.75198 * 28 27 26 30 30 H 0.96998 * 126.39855 * 180.02562 * 29 28 27 31 31 H 1.09004 * 109.47079 * 300.00150 * 1 2 3 32 32 H 1.09003 * 109.47011 * 59.99781 * 1 2 3 33 33 H 1.08998 * 109.47028 * 179.97438 * 1 2 3 34 34 H 1.08998 * 109.47474 * 180.02562 * 3 2 1 35 35 H 1.08999 * 109.47060 * 300.00384 * 3 2 1 36 36 H 1.08995 * 109.47064 * 59.99805 * 3 2 1 37 37 H 0.96992 * 120.00684 * 0.02562 * 6 4 2 38 38 H 1.08995 * 109.47377 * 300.00061 * 9 7 6 39 39 H 1.09003 * 109.47227 * 60.00109 * 9 7 6 40 40 H 1.09007 * 109.47039 * 299.99834 * 10 9 7 41 41 H 1.08999 * 109.47655 * 180.02562 * 10 9 7 42 42 H 1.09003 * 109.47067 * 179.97438 * 11 10 9 43 43 H 1.09004 * 109.46506 * 60.00123 * 11 10 9 44 44 H 1.08998 * 109.47124 * 300.00111 * 12 11 10 45 45 H 1.09003 * 109.47227 * 179.97438 * 12 11 10 46 46 H 1.09001 * 109.47210 * 294.99804 * 15 13 7 47 47 H 1.08996 * 109.47086 * 54.99950 * 15 13 7 48 48 H 0.97003 * 120.00254 * 359.97438 * 16 15 13 49 49 H 0.97005 * 119.99600 * 180.02562 * 20 19 17 50 50 H 1.07997 * 125.98946 * 0.02562 * 26 25 2 51 51 H 1.07998 * 125.64875 * 179.73562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.6688 -1.7369 1.1206 6 7 1.7744 -0.2049 2.4529 7 6 2.2623 -0.8958 3.6491 8 1 3.2308 -1.3490 3.4374 9 6 1.2662 -1.9855 4.0505 10 6 1.7760 -2.7076 5.2994 11 6 1.9227 -1.7037 6.4447 12 6 2.9188 -0.6140 6.0433 13 6 2.4084 0.1084 4.7941 14 1 1.4399 0.5614 5.0059 15 6 3.4045 1.1982 4.3927 16 7 3.4551 2.2227 5.4385 17 6 4.2827 3.3046 5.2978 18 1 4.8985 3.4022 4.4159 19 6 4.3303 4.2756 6.2885 20 7 5.1263 5.3152 6.1534 21 14 3.2647 4.1072 7.8135 22 1 4.0099 3.3591 8.8578 23 1 2.9160 5.4568 8.3253 24 1 2.0214 3.3716 7.4698 25 6 2.0323 -0.7103 -1.2304 26 6 2.9026 -0.2269 -2.1374 27 7 3.0905 -1.1678 -3.0747 28 6 2.3632 -2.2126 -2.7875 29 7 1.6873 -1.9687 -1.6442 30 1 1.0725 -2.5726 -1.1991 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 3.1300 1.4426 -0.0005 35 1 1.6767 1.9564 -0.8899 36 1 1.6767 1.9564 0.8899 37 1 1.2651 0.6159 2.5408 38 1 0.2978 -1.5325 4.2622 39 1 1.1621 -2.7010 3.2348 40 1 2.7444 -3.1608 5.0872 41 1 1.0667 -3.4842 5.5852 42 1 2.2855 -2.2182 7.3346 43 1 0.9543 -1.2506 6.6568 44 1 3.8871 -1.0671 5.8310 45 1 3.0230 0.1015 6.8590 46 1 4.3937 0.7579 4.2673 47 1 3.0873 1.6524 3.4540 48 1 2.9018 2.1353 6.2304 49 1 5.1597 5.9936 6.8460 50 1 3.3694 0.7466 -2.1129 51 1 2.3104 -3.1217 -3.3682 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001722957323.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:01:09 Heat of formation + Delta-G solvation = -13.728493 kcal Electronic energy + Delta-G solvation = -30184.124381 eV Core-core repulsion = 26310.627091 eV Total energy + Delta-G solvation = -3873.497290 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.13329 -41.32848 -39.56063 -36.60972 -36.39421 -35.13185 -33.83799 -33.34543 -31.62116 -30.59456 -29.48762 -28.23728 -27.11576 -25.08076 -24.42770 -23.46344 -22.42589 -22.11284 -21.78532 -21.16160 -20.51254 -19.79427 -18.98338 -17.63480 -17.33394 -16.62991 -16.27500 -16.02491 -15.85854 -15.55323 -15.35211 -15.15024 -15.04884 -14.86933 -14.75620 -14.63579 -14.40734 -14.32152 -13.75312 -13.68729 -13.55093 -13.31573 -13.07994 -13.02831 -12.79843 -12.67673 -12.59599 -12.24870 -12.17316 -12.12672 -11.94565 -11.83793 -11.51419 -11.35609 -11.17401 -11.03222 -10.97637 -10.90735 -10.67213 -10.00965 -9.34083 -9.28990 -8.01962 -5.35952 1.07202 1.37588 1.42502 1.49837 1.58603 2.10139 2.25693 2.32979 2.49132 3.29412 3.40784 3.44860 3.65811 3.75873 3.85557 3.86638 3.90977 3.97982 4.05164 4.23465 4.29061 4.41948 4.44983 4.50789 4.51485 4.54225 4.62298 4.66627 4.69729 4.80278 4.83537 4.85875 4.92387 5.02619 5.08616 5.13727 5.14345 5.18216 5.21993 5.27827 5.28902 5.33748 5.38583 5.47998 5.59302 5.75892 5.76452 6.21441 6.49752 6.57349 7.08669 7.13328 7.20210 7.83511 8.04557 9.19747 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.012426 B = 0.003331 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2252.853834 B = 8405.028281 C = 9981.872727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.002 3.998 3 C -0.142 4.142 4 C 0.522 3.478 5 O -0.574 6.574 6 N -0.709 5.709 7 C 0.161 3.839 8 H 0.061 0.939 9 C -0.115 4.115 10 C -0.113 4.113 11 C -0.114 4.114 12 C -0.111 4.111 13 C -0.090 4.090 14 H 0.091 0.909 15 C 0.162 3.838 16 N -0.751 5.751 17 C -0.235 4.235 18 H 0.050 0.950 19 C -0.064 4.064 20 N -0.985 5.985 21 Si 0.956 3.044 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.244 1.244 25 C 0.005 3.995 26 C -0.046 4.046 27 N -0.537 5.537 28 C 0.188 3.812 29 N -0.547 5.547 30 H 0.428 0.572 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.411 0.589 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.053 0.947 41 H 0.082 0.918 42 H 0.071 0.929 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.005 0.995 47 H 0.030 0.970 48 H 0.368 0.632 49 H 0.258 0.742 50 H 0.168 0.832 51 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.761 -18.513 -9.822 27.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.003 4.003 3 C -0.200 4.200 4 C 0.309 3.691 5 O -0.453 6.453 6 N -0.359 5.359 7 C 0.056 3.944 8 H 0.079 0.921 9 C -0.153 4.153 10 C -0.151 4.151 11 C -0.152 4.152 12 C -0.150 4.150 13 C -0.109 4.109 14 H 0.109 0.891 15 C 0.036 3.964 16 N -0.398 5.398 17 C -0.366 4.366 18 H 0.068 0.932 19 C -0.256 4.256 20 N -0.636 5.636 21 Si 0.783 3.217 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.168 1.168 25 C -0.113 4.113 26 C -0.193 4.193 27 N -0.256 5.256 28 C -0.096 4.096 29 N -0.149 5.149 30 H 0.268 0.732 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.110 0.890 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.099 0.901 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.092 0.908 44 H 0.072 0.928 45 H 0.075 0.925 46 H 0.023 0.977 47 H 0.048 0.952 48 H 0.202 0.798 49 H 0.067 0.933 50 H 0.185 0.815 51 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -16.614 -19.024 -10.715 27.436 hybrid contribution -0.466 0.536 1.717 1.859 sum -17.080 -18.487 -8.998 26.729 Atomic orbital electron populations 1.21915 0.89224 1.03285 1.04973 1.19238 0.98712 0.95631 0.86711 1.21917 1.01485 0.91694 1.04905 1.20796 0.78739 0.84512 0.85076 1.90684 1.41306 1.26163 1.87175 1.46004 1.56311 1.28669 1.04953 1.20831 0.97853 0.92435 0.83261 0.92082 1.21803 0.98822 0.96811 0.97912 1.21479 1.01488 0.97958 0.94133 1.21550 0.99413 0.95912 0.98281 1.21530 0.99187 0.97862 0.96381 1.21529 0.99701 0.94541 0.95145 0.89055 1.20754 0.96172 0.88381 0.91108 1.42633 1.50575 1.24010 1.22548 1.18991 1.15766 0.98368 1.03477 0.93164 1.25542 1.01309 0.96562 1.02139 1.69904 1.43673 1.13543 1.36456 0.85398 0.79844 0.76926 0.79567 1.20633 1.22335 1.16780 1.20633 1.03970 0.87691 0.98982 1.22249 1.02007 1.00887 0.94160 1.70241 1.24130 1.02273 1.28998 1.25624 0.94080 1.00932 0.89001 1.43081 1.36625 1.13863 1.21311 0.73243 0.89475 0.89814 0.91959 0.93089 0.89023 0.89982 0.75182 0.90080 0.92361 0.92793 0.89957 0.90992 0.90762 0.92788 0.92469 0.97733 0.95158 0.79814 0.93349 0.81494 0.74153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.39 71.98 0.60 -0.95 16 2 C 0.00 0.03 0.85 -53.67 -0.05 -0.01 16 3 C -0.14 -2.52 7.31 71.98 0.53 -2.00 16 4 C 0.52 12.19 6.44 87.66 0.56 12.75 16 5 O -0.57 -17.78 15.59 -3.03 -0.05 -17.83 16 6 N -0.71 -14.68 4.11 -442.53 -1.82 -16.50 16 7 C 0.16 3.74 1.90 44.99 0.09 3.82 16 8 H 0.06 1.79 7.58 -2.38 -0.02 1.78 16 9 C -0.11 -2.09 5.49 30.59 0.17 -1.92 16 10 C -0.11 -1.92 5.92 30.59 0.18 -1.74 16 11 C -0.11 -2.09 5.92 30.59 0.18 -1.91 16 12 C -0.11 -2.82 5.08 30.61 0.16 -2.66 16 13 C -0.09 -2.32 1.81 -10.77 -0.02 -2.34 16 14 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 15 C 0.16 5.88 5.56 86.38 0.48 6.36 16 16 N -0.75 -33.58 5.13 -343.46 -1.76 -35.34 16 17 C -0.23 -13.28 10.47 84.03 0.88 -12.40 16 18 H 0.05 3.17 8.06 -2.91 -0.02 3.14 16 19 C -0.06 -3.74 5.50 84.86 0.47 -3.27 16 20 N -0.99 -62.97 13.97 21.65 0.30 -62.67 16 21 Si 0.96 44.07 27.74 68.60 1.90 45.97 16 22 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 23 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 24 H -0.24 -9.76 6.52 99.48 0.65 -9.11 16 25 C 0.00 0.10 4.96 40.95 0.20 0.31 16 26 C -0.05 -1.17 10.87 83.52 0.91 -0.26 16 27 N -0.54 -14.31 11.25 -200.32 -2.25 -16.56 16 28 C 0.19 3.56 13.04 180.26 2.35 5.91 16 29 N -0.55 -9.78 5.99 -186.50 -1.12 -10.90 16 30 H 0.43 5.48 8.96 -92.71 -0.83 4.65 16 31 H 0.09 0.75 7.84 -2.39 -0.02 0.73 16 32 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 1.12 7.74 -2.39 -0.02 1.10 16 35 H 0.09 1.33 8.12 -2.39 -0.02 1.31 16 36 H 0.08 1.30 7.35 -2.39 -0.02 1.28 16 37 H 0.41 7.00 7.28 -92.71 -0.67 6.32 16 38 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.05 1.04 8.14 -2.38 -0.02 1.02 16 41 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 43 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.06 1.63 7.18 -2.39 -0.02 1.61 16 46 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 47 H 0.03 1.09 7.31 -2.39 -0.02 1.07 16 48 H 0.37 15.36 4.72 -92.71 -0.44 14.92 16 49 H 0.26 15.66 8.31 -92.70 -0.77 14.89 16 50 H 0.17 4.02 7.29 -2.91 -0.02 3.99 16 51 H 0.24 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -79.19 399.37 1.83 -77.35 By element: Atomic # 1 Polarization: 37.85 SS G_CDS: -1.06 Total: 36.79 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 7.69 Total: -0.31 kcal Atomic # 7 Polarization: -135.33 SS G_CDS: -6.65 Total: -141.98 kcal Atomic # 8 Polarization: -17.78 SS G_CDS: -0.05 Total: -17.83 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.97 kcal Total: -79.19 1.83 -77.35 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001722957323.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.625 kcal (2) G-P(sol) polarization free energy of solvation -79.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds