Wall clock time and date at job start Tue Mar 31 2020 19:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 C 1.50704 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.35364 * 126.38498 * 85.00550 * 4 3 2 6 6 C 1.41503 * 105.50203 * 180.02562 * 5 4 3 7 7 C 1.47709 * 126.52101 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99945 * 185.19332 * 9 7 6 11 11 C 1.52992 * 109.47317 * 298.52728 * 10 9 7 12 12 N 1.46503 * 109.47111 * 305.45651 * 11 10 9 13 13 C 1.36936 * 120.00392 * 185.19928 * 12 11 10 14 14 H 1.08004 * 119.99654 * 354.23813 * 13 12 11 15 15 C 1.38808 * 120.00639 * 174.24162 * 13 12 11 16 16 N 1.31615 * 120.00286 * 183.67388 * 15 13 12 17 17 Si 1.86806 * 119.99550 * 3.68062 * 15 13 12 18 18 H 1.48494 * 109.47277 * 92.95161 * 17 15 13 19 19 H 1.48500 * 109.46536 * 212.95449 * 17 15 13 20 20 H 1.48501 * 109.47092 * 332.94981 * 17 15 13 21 21 C 1.52998 * 109.46868 * 178.52624 * 10 9 7 22 22 C 1.53002 * 109.47592 * 299.99766 * 21 10 9 23 23 C 1.53002 * 109.47233 * 300.00463 * 22 21 10 24 24 C 1.53008 * 109.46980 * 59.99575 * 23 22 21 25 25 C 1.53002 * 109.47069 * 299.99924 * 24 23 22 26 26 N 1.31814 * 106.96356 * 0.26005 * 6 5 4 27 27 N 1.28467 * 110.06934 * 359.55942 * 26 6 5 28 28 H 0.96998 * 124.88286 * 180.16168 * 27 26 6 29 29 H 1.09000 * 109.46692 * 299.99908 * 1 2 3 30 30 H 1.09000 * 109.46827 * 59.99562 * 1 2 3 31 31 H 1.08993 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46930 * 240.00477 * 2 1 3 33 33 H 1.08995 * 109.47270 * 120.00430 * 2 1 3 34 34 H 1.09000 * 109.47199 * 60.00403 * 3 2 1 35 35 H 1.09000 * 109.47564 * 299.99987 * 3 2 1 36 36 H 1.07997 * 127.25317 * 0.02562 * 5 4 3 37 37 H 0.96997 * 120.00058 * 5.19681 * 9 7 6 38 38 H 1.09005 * 109.47251 * 65.44868 * 11 10 9 39 39 H 1.08993 * 109.47453 * 185.45330 * 11 10 9 40 40 H 0.96998 * 120.00209 * 5.19656 * 12 11 10 41 41 H 0.97002 * 120.00241 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.47124 * 60.00217 * 21 10 9 43 43 H 1.09006 * 109.47033 * 180.02562 * 21 10 9 44 44 H 1.09006 * 109.46488 * 60.00210 * 22 21 10 45 45 H 1.08999 * 109.47562 * 179.97438 * 22 21 10 46 46 H 1.08997 * 109.46949 * 300.00118 * 23 22 21 47 47 H 1.08999 * 109.47074 * 179.97438 * 23 22 21 48 48 H 1.09005 * 109.46708 * 180.02562 * 24 23 22 49 49 H 1.08994 * 109.46994 * 59.99973 * 24 23 22 50 50 H 1.08997 * 109.47100 * 300.00396 * 25 24 23 51 51 H 1.08999 * 109.47147 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3496 1.3477 -1.0866 6 6 5.6719 1.3909 -0.5846 7 6 6.9160 1.3209 -1.3778 8 8 6.8604 1.2157 -2.5877 9 7 8.1128 1.3748 -0.7604 10 6 9.3443 1.4202 -1.5526 11 6 9.4534 0.1503 -2.3989 12 7 9.3501 -1.0254 -1.5310 13 6 9.5273 -2.2791 -2.0524 14 1 9.6505 -2.4085 -3.1176 15 6 9.5485 -3.3838 -1.2122 16 7 9.7907 -4.5803 -1.7041 17 14 9.2329 -3.1721 0.6168 18 1 7.7890 -3.3761 0.8969 19 1 10.0301 -4.1694 1.3752 20 1 9.6290 -1.8025 1.0322 21 6 10.5502 1.5138 -0.6156 22 6 10.4412 2.7837 0.2308 23 6 10.4123 4.0075 -0.6871 24 6 9.2063 3.9138 -1.6241 25 6 9.3154 2.6439 -2.4705 26 7 5.5824 1.4991 0.7260 27 7 4.3486 1.5363 1.0820 28 1 4.0375 1.6158 1.9973 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 4.0449 1.2580 -2.1188 37 1 8.1587 1.3834 0.2085 38 1 8.6474 0.1322 -3.1325 39 1 10.4139 0.1384 -2.9140 40 1 9.1563 -0.9158 -0.5869 41 1 9.8059 -5.3522 -1.1168 42 1 10.5708 0.6420 0.0383 43 1 11.4665 1.5480 -1.2050 44 1 9.5248 2.7499 0.8202 45 1 11.3001 2.8502 0.8986 46 1 11.3285 4.0412 -1.2766 47 1 10.3342 4.9121 -0.0841 48 1 9.1860 4.7855 -2.2783 49 1 8.2901 3.8800 -1.0347 50 1 10.2317 2.6777 -3.0598 51 1 8.4565 2.5774 -3.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725222255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:59 Heat of formation + Delta-G solvation = 26.833603 kcal Electronic energy + Delta-G solvation = -30280.242025 eV Core-core repulsion = 26408.503640 eV Total energy + Delta-G solvation = -3871.738385 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.71349 -40.21629 -37.54048 -35.62135 -34.72411 -33.22344 -32.03341 -31.27742 -30.93641 -30.64475 -29.49064 -26.71396 -25.43976 -24.19705 -22.77819 -22.23647 -22.01965 -21.08201 -20.60084 -20.00580 -18.81911 -17.76591 -17.55306 -16.96624 -15.79475 -15.46310 -15.38280 -14.97180 -14.53560 -14.33535 -14.29856 -13.95439 -13.74744 -13.60613 -13.49349 -13.39903 -13.23075 -12.71934 -12.53729 -12.40776 -12.16116 -12.07974 -11.82696 -11.67999 -11.61296 -11.41045 -11.11768 -11.04624 -10.91804 -10.82024 -10.80926 -10.51325 -10.15735 -10.04967 -9.97419 -9.52957 -9.42556 -9.33822 -9.01379 -8.69641 -8.52208 -7.04227 -5.66045 -2.98447 1.66342 2.10394 2.76699 3.40007 3.44389 3.46958 3.49313 3.74651 4.33974 4.46942 4.61952 4.67570 4.70774 4.84071 4.89583 4.93411 5.00059 5.11020 5.28910 5.31304 5.35204 5.38714 5.44085 5.55861 5.60921 5.65377 5.66076 5.69992 5.72411 5.73872 5.80131 5.87206 5.92541 5.96281 5.98390 6.13348 6.17188 6.30383 6.32363 6.37367 6.41213 6.51605 6.59208 6.61319 6.87371 6.96861 7.13371 7.73298 8.00461 8.14606 8.53402 8.62117 9.34690 10.07217 10.29131 11.53019 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.004540 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.951186 B = 6166.129949 C = 8408.918202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.124 4.124 3 C -0.048 4.048 4 C 0.012 3.988 5 C -0.173 4.173 6 C -0.002 4.002 7 C 0.608 3.392 8 O -0.519 6.519 9 N -0.701 5.701 10 C 0.174 3.826 11 C 0.145 3.855 12 N -0.750 5.750 13 C -0.231 4.231 14 H 0.089 0.911 15 C 0.001 3.999 16 N -0.937 5.937 17 Si 0.883 3.117 18 H -0.288 1.288 19 H -0.292 1.292 20 H -0.278 1.278 21 C -0.120 4.120 22 C -0.121 4.121 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.128 4.128 26 N -0.262 5.262 27 N -0.383 5.383 28 H 0.441 0.559 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.057 0.943 32 H 0.072 0.928 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.400 0.600 38 H 0.051 0.949 39 H 0.034 0.966 40 H 0.359 0.641 41 H 0.257 0.743 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.059 0.941 45 H 0.061 0.939 46 H 0.061 0.939 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.070 0.930 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.975 19.684 7.172 24.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.162 4.162 3 C -0.087 4.087 4 C -0.114 4.114 5 C -0.201 4.201 6 C -0.163 4.163 7 C 0.391 3.609 8 O -0.393 6.393 9 N -0.353 5.353 10 C 0.088 3.912 11 C 0.017 3.983 12 N -0.396 5.396 13 C -0.361 4.361 14 H 0.107 0.893 15 C -0.193 4.193 16 N -0.586 5.586 17 Si 0.714 3.286 18 H -0.216 1.216 19 H -0.219 1.219 20 H -0.205 1.205 21 C -0.158 4.158 22 C -0.158 4.158 23 C -0.154 4.154 24 C -0.152 4.152 25 C -0.166 4.166 26 N -0.098 5.098 27 N -0.097 5.097 28 H 0.285 0.715 29 H 0.072 0.928 30 H 0.076 0.924 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.109 0.891 36 H 0.179 0.821 37 H 0.235 0.765 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.192 0.808 41 H 0.067 0.933 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.078 0.922 45 H 0.080 0.920 46 H 0.080 0.920 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.077 0.923 50 H 0.089 0.911 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.242 19.523 7.021 24.089 hybrid contribution -0.868 -0.199 1.760 1.972 sum -13.109 19.324 8.780 24.947 Atomic orbital electron populations 1.21773 0.95264 1.02079 1.01828 1.21565 0.95934 0.95483 1.03193 1.20197 0.86350 0.98305 1.03819 1.21395 0.94944 1.07675 0.87390 1.21510 0.90509 1.08267 0.99812 1.22135 0.95614 1.08834 0.89712 1.16731 0.81414 0.76311 0.86413 1.90745 1.86477 1.48914 1.13154 1.45822 1.05021 1.74325 1.10099 1.20672 0.82897 0.96029 0.91589 1.21115 0.99614 0.84387 0.93176 1.42608 1.87499 1.02336 1.07138 1.19084 1.40517 0.82140 0.94369 0.89305 1.24624 1.02372 0.95375 0.96972 1.69706 1.56657 0.98038 1.34202 0.86563 0.77733 0.76730 0.87598 1.21553 1.21890 1.20462 1.21800 0.97581 0.97928 0.98510 1.21569 1.01572 0.94807 0.97871 1.21533 0.98666 0.97444 0.97797 1.21464 0.98240 0.97481 0.97967 1.21882 1.03572 0.93015 0.98152 1.73542 1.01453 1.19531 1.15246 1.43260 1.03019 1.53704 1.09691 0.71473 0.92801 0.92414 0.92383 0.90901 0.91946 0.90805 0.89067 0.82101 0.76539 0.93127 0.94832 0.80840 0.93303 0.90706 0.90142 0.92230 0.92010 0.92005 0.92614 0.92444 0.92256 0.91094 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.91 37.16 0.37 -0.54 16 2 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 3 C -0.05 -0.33 5.77 -27.88 -0.16 -0.49 16 4 C 0.01 0.12 6.48 -82.21 -0.53 -0.41 16 5 C -0.17 -2.38 10.73 -39.36 -0.42 -2.81 16 6 C 0.00 -0.03 7.13 -82.76 -0.59 -0.62 16 7 C 0.61 10.97 7.23 -12.39 -0.09 10.88 16 8 O -0.52 -10.68 13.22 5.30 0.07 -10.61 16 9 N -0.70 -11.60 3.36 -48.58 -0.16 -11.76 16 10 C 0.17 2.87 0.32 -131.82 -0.04 2.83 16 11 C 0.14 3.08 4.88 -4.04 -0.02 3.06 16 12 N -0.75 -18.82 4.92 -59.91 -0.29 -19.12 16 13 C -0.23 -6.89 10.47 -15.06 -0.16 -7.04 16 14 H 0.09 2.85 8.06 -52.48 -0.42 2.43 16 15 C 0.00 0.04 5.50 -17.43 -0.10 -0.05 16 16 N -0.94 -30.54 13.97 55.49 0.78 -29.76 16 17 Si 0.88 23.18 27.85 -169.99 -4.73 18.44 16 18 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 19 H -0.29 -7.70 7.11 56.52 0.40 -7.30 16 20 H -0.28 -6.78 6.36 56.52 0.36 -6.42 16 21 C -0.12 -1.78 4.65 -26.73 -0.12 -1.91 16 22 C -0.12 -1.43 5.75 -26.73 -0.15 -1.59 16 23 C -0.12 -1.27 5.92 -26.73 -0.16 -1.43 16 24 C -0.11 -1.39 5.77 -26.73 -0.15 -1.54 16 25 C -0.13 -1.85 4.50 -26.73 -0.12 -1.97 16 26 N -0.26 -3.67 11.93 33.42 0.40 -3.27 16 27 N -0.38 -4.00 6.83 33.50 0.23 -3.77 16 28 H 0.44 2.91 8.96 -190.44 -1.71 1.21 16 29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.16 2.12 8.06 -52.49 -0.42 1.69 16 37 H 0.40 6.17 7.10 -40.82 -0.29 5.88 16 38 H 0.05 1.20 6.28 -51.93 -0.33 0.87 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.36 8.78 4.42 -40.82 -0.18 8.60 16 41 H 0.26 7.97 8.31 -40.82 -0.34 7.63 16 42 H 0.07 1.27 7.33 -51.93 -0.38 0.88 16 43 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 0.70 6.89 -51.93 -0.36 0.35 16 45 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.06 0.77 7.60 -51.93 -0.39 0.38 16 50 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 51 H 0.08 1.40 6.24 -51.93 -0.32 1.07 16 LS Contribution 396.83 15.07 5.98 5.98 Total: -1.00 -35.88 396.83 -10.25 -46.13 By element: Atomic # 1 Polarization: 22.33 SS G_CDS: -9.90 Total: 12.43 kcal Atomic # 6 Polarization: -2.09 SS G_CDS: -2.61 Total: -4.70 kcal Atomic # 7 Polarization: -68.62 SS G_CDS: 0.94 Total: -67.68 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.07 Total: -10.61 kcal Atomic # 14 Polarization: 23.18 SS G_CDS: -4.73 Total: 18.44 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -35.88 -10.25 -46.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725222255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.966 kcal (2) G-P(sol) polarization free energy of solvation -35.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.132 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.834 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds