Wall clock time and date at job start Tue Mar 31 2020 19:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47248 * 2 1 4 4 C 1.50704 * 109.47056 * 180.02562 * 3 2 1 5 5 C 1.35364 * 126.38498 * 85.00550 * 4 3 2 6 6 C 1.41503 * 105.50203 * 180.02562 * 5 4 3 7 7 C 1.47709 * 126.52101 * 179.97438 * 6 5 4 8 8 O 1.21572 * 119.99711 * 0.02562 * 7 6 5 9 9 N 1.34772 * 120.00213 * 179.97438 * 7 6 5 10 10 C 1.46506 * 119.99945 * 185.19332 * 9 7 6 11 11 C 1.52992 * 109.47317 * 298.52728 * 10 9 7 12 12 N 1.46503 * 109.47111 * 305.45651 * 11 10 9 13 13 C 1.36936 * 120.00392 * 185.19928 * 12 11 10 14 14 H 1.08004 * 119.99654 * 354.23813 * 13 12 11 15 15 C 1.38808 * 120.00639 * 174.24162 * 13 12 11 16 16 N 1.31615 * 120.00286 * 183.67388 * 15 13 12 17 17 Si 1.86806 * 119.99550 * 3.68062 * 15 13 12 18 18 H 1.48494 * 109.47277 * 92.95161 * 17 15 13 19 19 H 1.48500 * 109.46536 * 212.95449 * 17 15 13 20 20 H 1.48501 * 109.47092 * 332.94981 * 17 15 13 21 21 C 1.52998 * 109.46868 * 178.52624 * 10 9 7 22 22 C 1.53002 * 109.47592 * 299.99766 * 21 10 9 23 23 C 1.53002 * 109.47233 * 300.00463 * 22 21 10 24 24 C 1.53008 * 109.46980 * 59.99575 * 23 22 21 25 25 C 1.53002 * 109.47069 * 299.99924 * 24 23 22 26 26 N 1.31814 * 106.96356 * 0.26005 * 6 5 4 27 27 N 1.28467 * 110.06934 * 359.55942 * 26 6 5 28 28 H 0.96998 * 124.88286 * 180.16168 * 27 26 6 29 29 H 1.09000 * 109.46692 * 299.99908 * 1 2 3 30 30 H 1.09000 * 109.46827 * 59.99562 * 1 2 3 31 31 H 1.08993 * 109.47123 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46930 * 240.00477 * 2 1 3 33 33 H 1.08995 * 109.47270 * 120.00430 * 2 1 3 34 34 H 1.09000 * 109.47199 * 60.00403 * 3 2 1 35 35 H 1.09000 * 109.47564 * 299.99987 * 3 2 1 36 36 H 1.07997 * 127.25317 * 0.02562 * 5 4 3 37 37 H 0.96997 * 120.00058 * 5.19681 * 9 7 6 38 38 H 1.09005 * 109.47251 * 65.44868 * 11 10 9 39 39 H 1.08993 * 109.47453 * 185.45330 * 11 10 9 40 40 H 0.96998 * 120.00209 * 5.19656 * 12 11 10 41 41 H 0.97002 * 120.00241 * 179.97438 * 16 15 13 42 42 H 1.08997 * 109.47124 * 60.00217 * 21 10 9 43 43 H 1.09006 * 109.47033 * 180.02562 * 21 10 9 44 44 H 1.09006 * 109.46488 * 60.00210 * 22 21 10 45 45 H 1.08999 * 109.47562 * 179.97438 * 22 21 10 46 46 H 1.08997 * 109.46949 * 300.00118 * 23 22 21 47 47 H 1.08999 * 109.47074 * 179.97438 * 23 22 21 48 48 H 1.09005 * 109.46708 * 180.02562 * 24 23 22 49 49 H 1.08994 * 109.46994 * 59.99973 * 24 23 22 50 50 H 1.08997 * 109.47100 * 300.00396 * 25 24 23 51 51 H 1.08999 * 109.47147 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5471 1.4424 -0.0006 5 6 4.3496 1.3477 -1.0866 6 6 5.6719 1.3909 -0.5846 7 6 6.9160 1.3209 -1.3778 8 8 6.8604 1.2157 -2.5877 9 7 8.1128 1.3748 -0.7604 10 6 9.3443 1.4202 -1.5526 11 6 9.4534 0.1503 -2.3989 12 7 9.3501 -1.0254 -1.5310 13 6 9.5273 -2.2791 -2.0524 14 1 9.6505 -2.4085 -3.1176 15 6 9.5485 -3.3838 -1.2122 16 7 9.7907 -4.5803 -1.7041 17 14 9.2329 -3.1721 0.6168 18 1 7.7890 -3.3761 0.8969 19 1 10.0301 -4.1694 1.3752 20 1 9.6290 -1.8025 1.0322 21 6 10.5502 1.5138 -0.6156 22 6 10.4412 2.7837 0.2308 23 6 10.4123 4.0075 -0.6871 24 6 9.2063 3.9138 -1.6241 25 6 9.3154 2.6439 -2.4705 26 7 5.5824 1.4991 0.7260 27 7 4.3486 1.5363 1.0820 28 1 4.0375 1.6158 1.9973 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 1.6768 1.9563 0.8900 35 1 1.6768 1.9564 -0.8900 36 1 4.0449 1.2580 -2.1188 37 1 8.1587 1.3834 0.2085 38 1 8.6474 0.1322 -3.1325 39 1 10.4139 0.1384 -2.9140 40 1 9.1563 -0.9158 -0.5869 41 1 9.8059 -5.3522 -1.1168 42 1 10.5708 0.6420 0.0383 43 1 11.4665 1.5480 -1.2050 44 1 9.5248 2.7499 0.8202 45 1 11.3001 2.8502 0.8986 46 1 11.3285 4.0412 -1.2766 47 1 10.3342 4.9121 -0.0841 48 1 9.1860 4.7855 -2.2783 49 1 8.2901 3.8800 -1.0347 50 1 10.2317 2.6777 -3.0598 51 1 8.4565 2.5774 -3.1383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725222255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:54:58 Heat of formation + Delta-G solvation = 2.433664 kcal Electronic energy + Delta-G solvation = -30281.300085 eV Core-core repulsion = 26408.503640 eV Total energy + Delta-G solvation = -3872.796446 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -43.71237 -41.54396 -38.84482 -36.55601 -36.25947 -34.72264 -33.58153 -32.78224 -31.92552 -31.73160 -30.95763 -27.40113 -27.19949 -25.41539 -24.39377 -23.43749 -22.89786 -21.99389 -21.94342 -21.16661 -20.19450 -19.71621 -18.61910 -18.14747 -16.94037 -16.76680 -16.43417 -16.38238 -15.95591 -15.73894 -15.47708 -15.22746 -14.88824 -14.78118 -14.72719 -14.58563 -14.55725 -13.98081 -13.97348 -13.74848 -13.21127 -13.09140 -13.06091 -12.98312 -12.75517 -12.67566 -12.47233 -12.14784 -12.13322 -12.02387 -11.92546 -11.88179 -11.56172 -11.48609 -11.28879 -11.16076 -11.05806 -10.62904 -10.43116 -9.96439 -9.91300 -9.25414 -8.05131 -5.36721 0.53531 1.09579 1.27859 1.33317 1.40522 1.87660 2.25367 2.43400 2.43775 3.24361 3.36614 3.55595 3.64446 3.77994 3.82654 3.93479 3.97429 4.15022 4.22656 4.23249 4.37465 4.44704 4.47270 4.54573 4.59605 4.60131 4.68455 4.77113 4.81979 4.84637 4.85944 4.93535 4.96382 5.09616 5.15832 5.17958 5.22058 5.24667 5.28709 5.30658 5.33728 5.36072 5.43965 5.45241 5.52434 5.67583 5.74721 6.09787 6.18641 6.54382 6.86943 7.05694 7.27397 7.81795 8.04523 9.17028 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.008200 B = 0.004540 C = 0.003329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3413.951186 B = 6166.129949 C = 8408.918202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.124 4.124 3 C -0.043 4.043 4 C 0.037 3.963 5 C -0.203 4.203 6 C -0.035 4.035 7 C 0.601 3.399 8 O -0.557 6.557 9 N -0.694 5.694 10 C 0.180 3.820 11 C 0.144 3.856 12 N -0.745 5.745 13 C -0.231 4.231 14 H 0.049 0.951 15 C -0.062 4.062 16 N -0.983 5.983 17 Si 0.953 3.047 18 H -0.289 1.289 19 H -0.288 1.288 20 H -0.247 1.247 21 C -0.117 4.117 22 C -0.114 4.114 23 C -0.112 4.112 24 C -0.107 4.107 25 C -0.123 4.123 26 N -0.268 5.268 27 N -0.363 5.363 28 H 0.461 0.539 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.106 0.894 35 H 0.102 0.898 36 H 0.155 0.845 37 H 0.407 0.593 38 H 0.022 0.978 39 H 0.032 0.968 40 H 0.364 0.636 41 H 0.258 0.742 42 H 0.055 0.945 43 H 0.085 0.915 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.070 0.930 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.050 0.950 50 H 0.080 0.920 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 22.471 10.539 28.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.082 4.082 4 C -0.089 4.089 5 C -0.231 4.231 6 C -0.194 4.194 7 C 0.386 3.614 8 O -0.433 6.433 9 N -0.346 5.346 10 C 0.094 3.906 11 C 0.016 3.984 12 N -0.391 5.391 13 C -0.362 4.362 14 H 0.067 0.933 15 C -0.253 4.253 16 N -0.634 5.634 17 Si 0.780 3.220 18 H -0.215 1.215 19 H -0.214 1.214 20 H -0.172 1.172 21 C -0.155 4.155 22 C -0.152 4.152 23 C -0.149 4.149 24 C -0.144 4.144 25 C -0.161 4.161 26 N -0.105 5.105 27 N -0.080 5.080 28 H 0.309 0.691 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.173 0.827 37 H 0.243 0.757 38 H 0.040 0.960 39 H 0.050 0.950 40 H 0.198 0.802 41 H 0.067 0.933 42 H 0.073 0.927 43 H 0.104 0.896 44 H 0.079 0.921 45 H 0.099 0.901 46 H 0.089 0.911 47 H 0.096 0.904 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.099 0.901 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.268 22.364 10.424 28.015 hybrid contribution -0.627 -1.105 0.602 1.406 sum -13.895 21.259 11.025 27.687 Atomic orbital electron populations 1.21746 0.93832 1.02166 1.02865 1.21540 0.97152 0.95527 1.01970 1.20358 0.83415 0.98363 1.06034 1.21783 0.96372 1.04643 0.86132 1.21659 0.90493 1.10167 1.00801 1.21945 0.95370 1.11500 0.90625 1.17128 0.82441 0.75546 0.86257 1.90721 1.87138 1.50672 1.14817 1.45782 1.04657 1.73765 1.10363 1.20579 0.83994 0.94101 0.91875 1.21191 0.98226 0.85664 0.93285 1.42499 1.87196 1.01751 1.07680 1.19024 1.39876 0.84415 0.92854 0.93275 1.25449 1.02574 0.94800 1.02464 1.69890 1.58168 0.99077 1.36284 0.85428 0.77335 0.78332 0.80860 1.21546 1.21447 1.17185 1.21781 0.96556 0.99023 0.98168 1.21547 1.02546 0.93343 0.97724 1.21518 0.98085 0.97753 0.97538 1.21416 0.98728 0.96302 0.97995 1.21822 1.02946 0.93466 0.97905 1.73450 1.03111 1.19768 1.14151 1.43364 1.02090 1.51711 1.10807 0.69118 0.91237 0.91893 0.92847 0.93094 0.92325 0.87531 0.87916 0.82682 0.75706 0.95985 0.95019 0.80199 0.93333 0.92666 0.89620 0.92054 0.90088 0.91117 0.90441 0.90942 0.93162 0.90114 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.91 71.98 0.71 -0.71 16 2 C -0.12 -1.62 5.92 30.59 0.18 -1.43 16 3 C -0.04 -0.47 5.77 29.85 0.17 -0.29 16 4 C 0.04 0.72 6.48 41.40 0.27 0.98 16 5 C -0.20 -5.62 10.73 22.41 0.24 -5.38 16 6 C -0.03 -1.11 7.13 42.46 0.30 -0.81 16 7 C 0.60 22.35 7.23 86.75 0.63 22.98 16 8 O -0.56 -24.31 13.22 -3.94 -0.05 -24.36 16 9 N -0.69 -22.94 3.36 -425.89 -1.43 -24.37 16 10 C 0.18 5.96 0.32 3.60 0.00 5.97 16 11 C 0.14 6.36 4.88 86.38 0.42 6.78 16 12 N -0.75 -38.25 4.92 -343.46 -1.69 -39.94 16 13 C -0.23 -14.29 10.47 84.03 0.88 -13.41 16 14 H 0.05 3.36 8.06 -2.91 -0.02 3.34 16 15 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 16 N -0.98 -66.00 13.97 21.65 0.30 -65.70 16 17 Si 0.95 48.05 27.85 68.60 1.91 49.96 16 18 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 19 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 20 H -0.25 -11.10 6.36 99.48 0.63 -10.46 16 21 C -0.12 -3.30 4.65 30.59 0.14 -3.15 16 22 C -0.11 -2.35 5.75 30.60 0.18 -2.18 16 23 C -0.11 -2.04 5.92 30.60 0.18 -1.86 16 24 C -0.11 -2.39 5.77 30.60 0.18 -2.21 16 25 C -0.12 -3.54 4.50 30.60 0.14 -3.41 16 26 N -0.27 -7.12 11.93 -48.17 -0.57 -7.69 16 27 N -0.36 -6.68 6.83 -47.93 -0.33 -7.00 16 28 H 0.46 4.47 8.96 -220.00 -1.97 2.50 16 29 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 35 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.16 4.31 8.06 -2.91 -0.02 4.29 16 37 H 0.41 12.14 7.10 -92.71 -0.66 11.49 16 38 H 0.02 1.12 6.28 -2.38 -0.01 1.10 16 39 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 40 H 0.36 17.72 4.42 -92.71 -0.41 17.31 16 41 H 0.26 16.37 8.31 -92.71 -0.77 15.60 16 42 H 0.05 1.77 7.33 -2.39 -0.02 1.75 16 43 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 44 H 0.06 1.26 6.89 -2.38 -0.02 1.24 16 45 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 47 H 0.08 1.15 8.14 -2.39 -0.02 1.14 16 48 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 49 H 0.05 1.23 7.60 -2.39 -0.02 1.21 16 50 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.06 2.04 6.24 -2.39 -0.01 2.03 16 Total: -1.00 -82.17 396.83 1.06 -81.11 By element: Atomic # 1 Polarization: 41.68 SS G_CDS: -2.17 Total: 39.52 kcal Atomic # 6 Polarization: -6.60 SS G_CDS: 5.09 Total: -1.52 kcal Atomic # 7 Polarization: -140.99 SS G_CDS: -3.72 Total: -144.71 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.05 Total: -24.36 kcal Atomic # 14 Polarization: 48.05 SS G_CDS: 1.91 Total: 49.96 kcal Total: -82.17 1.06 -81.11 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725222255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.543 kcal (2) G-P(sol) polarization free energy of solvation -82.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds