Wall clock time and date at job start Tue Mar 31 2020 18:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34257 * 125.75399 * 2 1 4 4 C 1.38054 * 107.41528 * 179.90527 * 3 2 1 5 5 C 1.47426 * 126.41054 * 180.10709 * 4 3 2 6 6 O 1.21607 * 119.99621 * 185.81396 * 5 4 3 7 7 N 1.34778 * 120.00513 * 5.81008 * 5 4 3 8 8 C 1.46503 * 120.00139 * 180.02562 * 7 5 4 9 9 H 1.09004 * 112.85054 * 334.66785 * 8 7 5 10 10 C 1.53785 * 113.61283 * 105.86261 * 8 7 5 11 11 C 1.54049 * 86.98656 * 89.16121 * 10 8 7 12 12 H 1.08996 * 113.68749 * 270.87555 * 11 10 8 13 13 C 1.52998 * 113.62222 * 139.97452 * 11 10 8 14 14 N 1.46502 * 109.46911 * 87.50269 * 13 11 10 15 15 C 1.36934 * 119.99718 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00503 * 0.02562 * 15 14 13 17 17 C 1.38822 * 119.99629 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99901 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99769 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46988 * 90.00136 * 19 17 15 21 21 H 1.48500 * 109.46916 * 209.99564 * 19 17 15 22 22 H 1.48502 * 109.47290 * 330.00124 * 19 17 15 23 23 C 1.53777 * 113.61180 * 203.46929 * 8 7 5 24 24 C 1.41286 * 107.16868 * 0.35435 * 4 3 2 25 25 C 1.50699 * 125.98431 * 179.80400 * 24 4 3 26 26 C 1.53007 * 109.46850 * 177.89834 * 25 24 4 27 27 C 1.53005 * 109.46988 * 297.89007 * 25 24 4 28 28 C 1.52994 * 109.47484 * 57.89289 * 25 24 4 29 29 N 1.30449 * 108.02544 * 359.78134 * 24 4 3 30 30 H 1.09005 * 109.47249 * 269.71855 * 1 2 3 31 31 H 1.08996 * 109.47125 * 149.71497 * 1 2 3 32 32 H 1.09000 * 109.47272 * 29.71389 * 1 2 3 33 33 H 1.07998 * 126.29570 * 0.02562 * 3 2 1 34 34 H 0.97001 * 119.99767 * 0.02562 * 7 5 4 35 35 H 1.09002 * 113.61149 * 203.66585 * 10 8 7 36 36 H 1.09001 * 113.61348 * 334.56719 * 10 8 7 37 37 H 1.08992 * 109.47685 * 207.50855 * 13 11 10 38 38 H 1.09002 * 109.46801 * 327.51265 * 13 11 10 39 39 H 0.97006 * 119.99971 * 0.02562 * 14 13 11 40 40 H 0.96997 * 119.99937 * 180.02562 * 18 17 15 41 41 H 1.08991 * 113.61661 * 25.43317 * 23 8 7 42 42 H 1.09005 * 113.60947 * 156.33572 * 23 8 7 43 43 H 1.08994 * 109.47148 * 59.99686 * 26 25 24 44 44 H 1.08998 * 109.47142 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.46557 * 299.99494 * 26 25 24 46 46 H 1.08998 * 109.46599 * 65.00282 * 27 25 24 47 47 H 1.09007 * 109.47078 * 184.99500 * 27 25 24 48 48 H 1.08993 * 109.47416 * 304.99750 * 27 25 24 49 49 H 1.09002 * 109.46902 * 54.85054 * 28 25 24 50 50 H 1.09003 * 109.47139 * 174.84557 * 28 25 24 51 51 H 1.08998 * 109.47566 * 294.84944 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0895 0.0000 4 6 3.5598 0.6552 0.0022 5 6 4.7638 1.5061 0.0052 6 8 5.8652 1.0014 -0.0998 7 7 4.6438 2.8432 0.1242 8 6 5.8402 3.6887 0.1266 9 1 6.7318 3.1596 0.4632 10 6 6.0448 4.4702 -1.1820 11 6 5.1895 5.5868 -0.5538 12 1 4.1212 5.4779 -0.7409 13 6 5.7046 6.9959 -0.8535 14 7 5.1347 7.4652 -2.1190 15 6 5.4554 8.7085 -2.5949 16 1 6.1287 9.3429 -2.0377 17 6 4.9150 9.1533 -3.7937 18 7 4.0941 8.3803 -4.4725 19 14 5.3519 10.8496 -4.4427 20 1 6.5555 10.7539 -5.3074 21 1 4.2151 11.3846 -5.2343 22 1 5.6326 11.7587 -3.3025 23 6 5.6328 5.0473 0.8165 24 6 3.5310 -0.7574 -0.0048 25 6 4.7321 -1.6675 -0.0095 26 6 4.2679 -3.1247 0.0362 27 6 5.5459 -1.4313 -1.2835 28 6 5.6018 -1.3706 1.2136 29 7 2.2826 -1.1356 -0.0061 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3633 -0.8874 -0.5182 32 1 -0.3634 0.8925 -0.5094 33 1 1.9166 2.1169 0.0004 34 1 3.7652 3.2457 0.2082 35 1 7.0803 4.7609 -1.3595 36 1 5.5818 3.9989 -2.0489 37 1 5.4086 7.6697 -0.0497 38 1 6.7918 6.9767 -0.9297 39 1 4.5302 6.8952 -2.6197 40 1 3.7168 8.6910 -5.3104 41 1 4.8375 5.0418 1.5617 42 1 6.5559 5.4956 1.1843 43 1 3.6483 -3.3362 -0.8353 44 1 5.1366 -3.7831 0.0333 45 1 3.6881 -3.2930 0.9437 46 1 5.9509 -0.4195 -1.2734 47 1 6.3644 -2.1498 -1.3302 48 1 4.9024 -1.5566 -2.1542 49 1 4.9973 -1.4500 2.1172 50 1 6.4207 -2.0886 1.2602 51 1 6.0071 -0.3618 1.1352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725366988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:58 Heat of formation + Delta-G solvation = 68.950552 kcal Electronic energy + Delta-G solvation = -29117.910449 eV Core-core repulsion = 25247.998392 eV Total energy + Delta-G solvation = -3869.912057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.79357 -39.89009 -38.21156 -36.82249 -34.49688 -33.31710 -32.78953 -31.03482 -30.34446 -27.42322 -27.17909 -27.12750 -26.58490 -25.46876 -23.80499 -22.86545 -21.93706 -21.41073 -20.53656 -19.10449 -18.55142 -17.80241 -17.05184 -16.28645 -15.96938 -15.71917 -15.07538 -14.93316 -14.86628 -14.57957 -14.25933 -14.14930 -14.04403 -13.83592 -13.34440 -13.22791 -12.92161 -12.89078 -12.67016 -12.35007 -12.16436 -12.12630 -12.09603 -11.72502 -11.48241 -11.25979 -11.15394 -10.99080 -10.96199 -10.82397 -10.58915 -10.40160 -10.30806 -10.07750 -9.80733 -9.61858 -9.59983 -9.57633 -8.98414 -8.85396 -8.72634 -6.89444 -5.75621 -3.03483 1.26935 2.01371 2.06658 3.19273 3.36495 3.43905 3.48970 3.50514 4.02442 4.29681 4.52135 4.58837 4.70168 4.72240 4.81727 4.85917 4.97180 5.00203 5.01274 5.14406 5.15750 5.18356 5.29147 5.42531 5.58961 5.62847 5.70803 5.77323 5.83290 5.89893 5.90718 5.96847 5.97324 6.01857 6.08474 6.10738 6.13500 6.26883 6.32101 6.36033 6.45426 6.49394 6.53881 6.58689 6.77589 6.81965 6.97007 7.35326 7.57564 7.70972 8.34257 8.43815 9.54777 10.14272 10.48597 11.47451 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.002296 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.293673 B =12193.350155 C =12899.384609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.363 5.363 3 C 0.100 3.900 4 C -0.285 4.285 5 C 0.594 3.406 6 O -0.528 6.528 7 N -0.707 5.707 8 C 0.120 3.880 9 H 0.100 0.900 10 C -0.139 4.139 11 C -0.113 4.113 12 H 0.086 0.914 13 C 0.162 3.838 14 N -0.732 5.732 15 C -0.238 4.238 16 H 0.070 0.930 17 C -0.016 4.016 18 N -0.935 5.935 19 Si 0.906 3.094 20 H -0.290 1.290 21 H -0.292 1.292 22 H -0.282 1.282 23 C -0.138 4.138 24 C 0.147 3.853 25 C 0.020 3.980 26 C -0.136 4.136 27 C -0.154 4.154 28 C -0.153 4.153 29 N -0.299 5.299 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.183 0.817 34 H 0.396 0.604 35 H 0.090 0.910 36 H 0.068 0.932 37 H 0.018 0.982 38 H 0.020 0.980 39 H 0.383 0.617 40 H 0.254 0.746 41 H 0.068 0.932 42 H 0.094 0.906 43 H 0.055 0.945 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.101 0.899 47 H 0.056 0.944 48 H 0.043 0.957 49 H 0.042 0.958 50 H 0.056 0.944 51 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.164 -20.971 13.465 25.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.140 5.140 3 C -0.052 4.052 4 C -0.300 4.300 5 C 0.383 3.617 6 O -0.407 6.407 7 N -0.357 5.357 8 C 0.015 3.985 9 H 0.118 0.882 10 C -0.177 4.177 11 C -0.132 4.132 12 H 0.104 0.896 13 C 0.034 3.966 14 N -0.376 5.376 15 C -0.369 4.369 16 H 0.088 0.912 17 C -0.212 4.212 18 N -0.584 5.584 19 Si 0.738 3.262 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.208 1.208 23 C -0.177 4.177 24 C -0.021 4.021 25 C 0.018 3.982 26 C -0.194 4.194 27 C -0.212 4.212 28 C -0.211 4.211 29 N -0.119 5.119 30 H 0.097 0.903 31 H 0.111 0.889 32 H 0.111 0.889 33 H 0.200 0.800 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.087 0.913 37 H 0.035 0.965 38 H 0.038 0.962 39 H 0.216 0.784 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.113 0.887 43 H 0.075 0.925 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.119 0.881 47 H 0.075 0.925 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.075 0.925 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.322 -22.155 13.383 26.425 hybrid contribution -0.345 1.806 -0.656 1.952 sum -5.667 -20.349 12.728 24.661 Atomic orbital electron populations 1.21996 0.73530 1.05079 1.03835 1.48322 1.07096 1.03871 1.54751 1.23126 0.90555 0.93852 0.97683 1.20212 0.92480 0.93973 1.23369 1.17196 0.87787 0.81196 0.75496 1.90525 1.27344 1.72696 1.50166 1.45528 1.09574 1.05881 1.74688 1.21904 0.88392 0.90293 0.97950 0.88172 1.23458 1.01180 0.96273 0.96814 1.22800 0.99695 0.95920 0.94784 0.89589 1.20642 0.95676 0.90873 0.89371 1.42350 1.55963 1.17396 1.21870 1.19249 1.22321 0.92380 1.02936 0.91243 1.24738 1.00087 0.98492 0.97837 1.69657 1.35407 1.36674 1.16627 0.86196 0.77347 0.84038 0.78663 1.21730 1.21817 1.20790 1.23309 1.02415 0.94873 0.97094 1.22406 0.92871 0.92170 0.94623 1.18977 0.89289 0.91956 0.98020 1.21826 1.00872 0.94584 1.02108 1.22175 0.98960 1.05617 0.94399 1.22162 0.98674 1.05316 0.94906 1.77205 1.01285 1.06948 1.26444 0.90253 0.88910 0.88920 0.80028 0.76958 0.89175 0.91322 0.96472 0.96195 0.78364 0.93586 0.91378 0.88736 0.92541 0.92377 0.92692 0.88102 0.92538 0.93781 0.93876 0.92481 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.46 11.44 59.84 0.68 1.14 16 2 N -0.36 -3.35 3.98 -67.60 -0.27 -3.62 16 3 C 0.10 0.89 10.99 -16.56 -0.18 0.71 16 4 C -0.29 -3.32 5.95 -105.07 -0.63 -3.95 16 5 C 0.59 7.47 7.55 -12.52 -0.09 7.37 16 6 O -0.53 -7.70 9.62 5.27 0.05 -7.65 16 7 N -0.71 -7.75 5.25 -54.09 -0.28 -8.04 16 8 C 0.12 1.44 4.30 -67.12 -0.29 1.15 16 9 H 0.10 1.26 7.50 -51.93 -0.39 0.87 16 10 C -0.14 -2.01 7.45 -25.77 -0.19 -2.20 16 11 C -0.11 -1.69 3.65 -89.66 -0.33 -2.02 16 12 H 0.09 1.30 8.14 -51.93 -0.42 0.87 16 13 C 0.16 3.17 6.10 -4.04 -0.02 3.14 16 14 N -0.73 -18.43 5.60 -59.91 -0.34 -18.77 16 15 C -0.24 -6.67 9.99 -15.06 -0.15 -6.82 16 16 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 17 C -0.02 -0.46 5.50 -17.43 -0.10 -0.55 16 18 N -0.93 -28.31 13.06 55.49 0.72 -27.58 16 19 Si 0.91 22.46 29.55 -169.99 -5.02 17.44 16 20 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.14 -1.59 7.38 -25.92 -0.19 -1.78 16 24 C 0.15 1.82 5.64 -82.02 -0.46 1.36 16 25 C 0.02 0.23 0.75 -155.66 -0.12 0.11 16 26 C -0.14 -1.38 7.96 37.16 0.30 -1.08 16 27 C -0.15 -1.84 8.27 37.16 0.31 -1.53 16 28 C -0.15 -1.72 8.21 37.15 0.31 -1.42 16 29 N -0.30 -3.59 11.80 33.89 0.40 -3.19 16 30 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.09 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.18 0.95 7.49 -52.49 -0.39 0.56 16 34 H 0.40 3.49 7.66 -40.82 -0.31 3.18 16 35 H 0.09 1.34 7.90 -51.93 -0.41 0.93 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.02 0.40 7.85 -51.93 -0.41 -0.01 16 39 H 0.38 10.13 7.67 -40.82 -0.31 9.81 16 40 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 41 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.09 1.04 8.10 -51.93 -0.42 0.62 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 46 H 0.10 1.41 4.69 -51.93 -0.24 1.16 16 47 H 0.06 0.59 8.14 -51.92 -0.42 0.17 16 48 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 51 H 0.10 1.27 4.59 -51.93 -0.24 1.03 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -34.30 404.86 -8.39 -42.68 By element: Atomic # 1 Polarization: 17.58 SS G_CDS: -8.59 Total: 8.99 kcal Atomic # 6 Polarization: -5.21 SS G_CDS: -1.16 Total: -6.37 kcal Atomic # 7 Polarization: -61.43 SS G_CDS: 0.24 Total: -61.19 kcal Atomic # 8 Polarization: -7.70 SS G_CDS: 0.05 Total: -7.65 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.30 -8.39 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725366988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.635 kcal (2) G-P(sol) polarization free energy of solvation -34.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds