Wall clock time and date at job start Tue Mar 31 2020 18:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34257 * 125.75399 * 2 1 4 4 C 1.38054 * 107.41528 * 179.90527 * 3 2 1 5 5 C 1.47426 * 126.41054 * 180.10709 * 4 3 2 6 6 O 1.21607 * 119.99621 * 185.81396 * 5 4 3 7 7 N 1.34778 * 120.00513 * 5.81008 * 5 4 3 8 8 C 1.46503 * 120.00139 * 180.02562 * 7 5 4 9 9 H 1.09004 * 112.85054 * 334.66785 * 8 7 5 10 10 C 1.53785 * 113.61283 * 105.86261 * 8 7 5 11 11 C 1.54049 * 86.98656 * 89.16121 * 10 8 7 12 12 H 1.08996 * 113.68749 * 270.87555 * 11 10 8 13 13 C 1.52998 * 113.62222 * 139.97452 * 11 10 8 14 14 N 1.46502 * 109.46911 * 87.50269 * 13 11 10 15 15 C 1.36934 * 119.99718 * 180.02562 * 14 13 11 16 16 H 1.07996 * 120.00503 * 0.02562 * 15 14 13 17 17 C 1.38822 * 119.99629 * 180.02562 * 15 14 13 18 18 N 1.31615 * 119.99901 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99769 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.46988 * 90.00136 * 19 17 15 21 21 H 1.48500 * 109.46916 * 209.99564 * 19 17 15 22 22 H 1.48502 * 109.47290 * 330.00124 * 19 17 15 23 23 C 1.53777 * 113.61180 * 203.46929 * 8 7 5 24 24 C 1.41286 * 107.16868 * 0.35435 * 4 3 2 25 25 C 1.50699 * 125.98431 * 179.80400 * 24 4 3 26 26 C 1.53007 * 109.46850 * 177.89834 * 25 24 4 27 27 C 1.53005 * 109.46988 * 297.89007 * 25 24 4 28 28 C 1.52994 * 109.47484 * 57.89289 * 25 24 4 29 29 N 1.30449 * 108.02544 * 359.78134 * 24 4 3 30 30 H 1.09005 * 109.47249 * 269.71855 * 1 2 3 31 31 H 1.08996 * 109.47125 * 149.71497 * 1 2 3 32 32 H 1.09000 * 109.47272 * 29.71389 * 1 2 3 33 33 H 1.07998 * 126.29570 * 0.02562 * 3 2 1 34 34 H 0.97001 * 119.99767 * 0.02562 * 7 5 4 35 35 H 1.09002 * 113.61149 * 203.66585 * 10 8 7 36 36 H 1.09001 * 113.61348 * 334.56719 * 10 8 7 37 37 H 1.08992 * 109.47685 * 207.50855 * 13 11 10 38 38 H 1.09002 * 109.46801 * 327.51265 * 13 11 10 39 39 H 0.97006 * 119.99971 * 0.02562 * 14 13 11 40 40 H 0.96997 * 119.99937 * 180.02562 * 18 17 15 41 41 H 1.08991 * 113.61661 * 25.43317 * 23 8 7 42 42 H 1.09005 * 113.60947 * 156.33572 * 23 8 7 43 43 H 1.08994 * 109.47148 * 59.99686 * 26 25 24 44 44 H 1.08998 * 109.47142 * 180.02562 * 26 25 24 45 45 H 1.08999 * 109.46557 * 299.99494 * 26 25 24 46 46 H 1.08998 * 109.46599 * 65.00282 * 27 25 24 47 47 H 1.09007 * 109.47078 * 184.99500 * 27 25 24 48 48 H 1.08993 * 109.47416 * 304.99750 * 27 25 24 49 49 H 1.09002 * 109.46902 * 54.85054 * 28 25 24 50 50 H 1.09003 * 109.47139 * 174.84557 * 28 25 24 51 51 H 1.08998 * 109.47566 * 294.84944 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2494 1.0895 0.0000 4 6 3.5598 0.6552 0.0022 5 6 4.7638 1.5061 0.0052 6 8 5.8652 1.0014 -0.0998 7 7 4.6438 2.8432 0.1242 8 6 5.8402 3.6887 0.1266 9 1 6.7318 3.1596 0.4632 10 6 6.0448 4.4702 -1.1820 11 6 5.1895 5.5868 -0.5538 12 1 4.1212 5.4779 -0.7409 13 6 5.7046 6.9959 -0.8535 14 7 5.1347 7.4652 -2.1190 15 6 5.4554 8.7085 -2.5949 16 1 6.1287 9.3429 -2.0377 17 6 4.9150 9.1533 -3.7937 18 7 4.0941 8.3803 -4.4725 19 14 5.3519 10.8496 -4.4427 20 1 6.5555 10.7539 -5.3074 21 1 4.2151 11.3846 -5.2343 22 1 5.6326 11.7587 -3.3025 23 6 5.6328 5.0473 0.8165 24 6 3.5310 -0.7574 -0.0048 25 6 4.7321 -1.6675 -0.0095 26 6 4.2679 -3.1247 0.0362 27 6 5.5459 -1.4313 -1.2835 28 6 5.6018 -1.3706 1.2136 29 7 2.2826 -1.1356 -0.0061 30 1 -0.3634 -0.0050 1.0277 31 1 -0.3633 -0.8874 -0.5182 32 1 -0.3634 0.8925 -0.5094 33 1 1.9166 2.1169 0.0004 34 1 3.7652 3.2457 0.2082 35 1 7.0803 4.7609 -1.3595 36 1 5.5818 3.9989 -2.0489 37 1 5.4086 7.6697 -0.0497 38 1 6.7918 6.9767 -0.9297 39 1 4.5302 6.8952 -2.6197 40 1 3.7168 8.6910 -5.3104 41 1 4.8375 5.0418 1.5617 42 1 6.5559 5.4956 1.1843 43 1 3.6483 -3.3362 -0.8353 44 1 5.1366 -3.7831 0.0333 45 1 3.6881 -3.2930 0.9437 46 1 5.9509 -0.4195 -1.2734 47 1 6.3644 -2.1498 -1.3302 48 1 4.9024 -1.5566 -2.1542 49 1 4.9973 -1.4500 2.1172 50 1 6.4207 -2.0886 1.2602 51 1 6.0071 -0.3618 1.1352 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725366988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:54:55 Heat of formation + Delta-G solvation = 46.679186 kcal Electronic energy + Delta-G solvation = -29118.876208 eV Core-core repulsion = 25247.998392 eV Total energy + Delta-G solvation = -3870.877816 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 334.211 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -42.57082 -40.90619 -39.24767 -37.69649 -36.27070 -34.41400 -33.57916 -32.79112 -31.30594 -28.52537 -28.10406 -28.04907 -27.61809 -26.55500 -25.34101 -24.08289 -22.81983 -22.66480 -21.40405 -20.25202 -19.41801 -19.01896 -18.61170 -17.22373 -16.72786 -16.66877 -16.54356 -15.97643 -15.80908 -15.73774 -15.57220 -15.22061 -15.02605 -14.95321 -14.88755 -14.41883 -13.83118 -13.66528 -13.52564 -13.46054 -13.27749 -13.08882 -12.99432 -12.92644 -12.88640 -12.69985 -12.32121 -12.21403 -12.15572 -11.97251 -11.88241 -11.83070 -11.69688 -11.37399 -11.27320 -11.07446 -10.81845 -10.57160 -10.36770 -9.91420 -9.55564 -8.95524 -7.93829 -5.21449 0.54308 1.14120 1.46895 1.47678 1.49427 1.57693 2.29169 2.46698 2.57302 3.31569 3.39410 3.63989 3.67054 3.68004 3.93396 4.01080 4.03477 4.09427 4.13918 4.24403 4.35398 4.38102 4.42567 4.47983 4.61622 4.67968 4.70611 4.82890 4.83747 4.86056 4.92124 4.96156 4.97373 5.00145 5.04497 5.04943 5.12441 5.18561 5.21171 5.23039 5.34067 5.41065 5.50789 5.53120 5.59320 5.63093 5.89316 5.91989 6.29397 6.54947 6.73652 7.35349 7.43920 8.14139 8.36230 9.29841 Molecular weight = 334.21amu Principal moments of inertia in cm(-1) A = 0.016301 B = 0.002296 C = 0.002170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.293673 B =12193.350155 C =12899.384609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.361 5.361 3 C 0.115 3.885 4 C -0.314 4.314 5 C 0.592 3.408 6 O -0.554 6.554 7 N -0.699 5.699 8 C 0.133 3.867 9 H 0.097 0.903 10 C -0.144 4.144 11 C -0.110 4.110 12 H 0.087 0.913 13 C 0.159 3.841 14 N -0.745 5.745 15 C -0.244 4.244 16 H 0.074 0.926 17 C -0.078 4.078 18 N -0.970 5.970 19 Si 0.972 3.028 20 H -0.289 1.289 21 H -0.295 1.295 22 H -0.269 1.269 23 C -0.116 4.116 24 C 0.131 3.869 25 C 0.016 3.984 26 C -0.129 4.129 27 C -0.148 4.148 28 C -0.146 4.146 29 N -0.324 5.324 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.119 0.881 33 H 0.221 0.779 34 H 0.408 0.592 35 H 0.082 0.918 36 H 0.049 0.951 37 H 0.022 0.978 38 H 0.018 0.982 39 H 0.373 0.627 40 H 0.250 0.750 41 H 0.092 0.908 42 H 0.104 0.896 43 H 0.049 0.951 44 H 0.071 0.929 45 H 0.052 0.948 46 H 0.081 0.919 47 H 0.067 0.933 48 H 0.036 0.964 49 H 0.042 0.958 50 H 0.067 0.933 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 -20.577 14.947 26.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.138 5.138 3 C -0.038 4.038 4 C -0.329 4.329 5 C 0.382 3.618 6 O -0.435 6.435 7 N -0.349 5.349 8 C 0.027 3.973 9 H 0.115 0.885 10 C -0.182 4.182 11 C -0.129 4.129 12 H 0.105 0.895 13 C 0.033 3.967 14 N -0.387 5.387 15 C -0.376 4.376 16 H 0.092 0.908 17 C -0.270 4.270 18 N -0.621 5.621 19 Si 0.801 3.199 20 H -0.216 1.216 21 H -0.221 1.221 22 H -0.194 1.194 23 C -0.155 4.155 24 C -0.036 4.036 25 C 0.013 3.987 26 C -0.186 4.186 27 C -0.206 4.206 28 C -0.203 4.203 29 N -0.145 5.145 30 H 0.114 0.886 31 H 0.111 0.889 32 H 0.137 0.863 33 H 0.237 0.763 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.068 0.932 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.205 0.795 40 H 0.059 0.941 41 H 0.110 0.890 42 H 0.123 0.877 43 H 0.068 0.932 44 H 0.090 0.910 45 H 0.071 0.929 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.055 0.945 49 H 0.061 0.939 50 H 0.085 0.915 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -6.148 -21.766 14.913 27.092 hybrid contribution -0.129 1.664 -1.096 1.996 sum -6.277 -20.102 13.817 25.188 Atomic orbital electron populations 1.22385 0.71025 1.06485 1.05364 1.48700 1.08467 1.03258 1.53333 1.23652 0.89557 0.95276 0.95299 1.20245 0.93269 0.93742 1.25681 1.17399 0.87845 0.81573 0.75025 1.90521 1.28403 1.73230 1.51320 1.45405 1.09864 1.05360 1.74293 1.21695 0.88877 0.90555 0.96142 0.88490 1.23465 1.00497 0.96855 0.97428 1.22732 0.99583 0.93061 0.97525 0.89484 1.20842 0.95360 0.93498 0.87033 1.42585 1.55989 1.16590 1.23553 1.19663 1.21528 0.93460 1.02912 0.90766 1.25557 1.00684 1.02281 0.98470 1.69809 1.36913 1.38451 1.16940 0.85161 0.76687 0.79930 0.78129 1.21610 1.22142 1.19351 1.23217 1.03510 0.93197 0.95556 1.22559 0.93201 0.92788 0.95095 1.19010 0.89324 0.92751 0.97575 1.21750 1.01233 0.93973 1.01646 1.22085 0.99182 1.04715 0.94581 1.22064 0.98868 1.04582 0.94827 1.77130 1.01486 1.08610 1.27274 0.88605 0.88853 0.86254 0.76282 0.75519 0.89941 0.93244 0.96056 0.96361 0.79530 0.94081 0.88961 0.87741 0.93194 0.91006 0.92877 0.90035 0.91440 0.94529 0.93915 0.91453 0.90076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.60 11.44 127.77 1.46 2.06 16 2 N -0.36 -5.97 3.98 -367.79 -1.46 -7.44 16 3 C 0.12 1.81 10.99 84.28 0.93 2.73 16 4 C -0.31 -7.08 5.95 -20.15 -0.12 -7.20 16 5 C 0.59 14.60 7.55 86.66 0.65 15.26 16 6 O -0.55 -16.41 9.62 -4.05 -0.04 -16.45 16 7 N -0.70 -14.31 5.25 -443.29 -2.33 -16.63 16 8 C 0.13 3.03 4.30 45.52 0.20 3.22 16 9 H 0.10 2.35 7.50 -2.39 -0.02 2.33 16 10 C -0.14 -4.13 7.45 31.21 0.23 -3.89 16 11 C -0.11 -3.15 3.65 -10.17 -0.04 -3.18 16 12 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 13 C 0.16 6.07 6.10 86.38 0.53 6.60 16 14 N -0.74 -37.53 5.60 -343.45 -1.92 -39.45 16 15 C -0.24 -13.63 9.99 84.04 0.84 -12.79 16 16 H 0.07 3.99 7.83 -2.91 -0.02 3.97 16 17 C -0.08 -4.49 5.50 84.87 0.47 -4.02 16 18 N -0.97 -59.39 13.06 21.65 0.28 -59.11 16 19 Si 0.97 46.14 29.55 68.60 2.03 48.17 16 20 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 21 H -0.29 -14.03 7.11 99.48 0.71 -13.33 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 23 C -0.12 -2.37 7.38 31.12 0.23 -2.14 16 24 C 0.13 3.21 5.64 43.51 0.25 3.46 16 25 C 0.02 0.36 0.75 -52.93 -0.04 0.32 16 26 C -0.13 -2.55 7.96 71.98 0.57 -1.98 16 27 C -0.15 -3.62 8.27 71.98 0.60 -3.02 16 28 C -0.15 -3.28 8.21 71.98 0.59 -2.69 16 29 N -0.32 -7.57 11.80 -46.68 -0.55 -8.12 16 30 H 0.10 0.39 8.14 -2.38 -0.02 0.37 16 31 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.12 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.22 1.50 7.49 -2.91 -0.02 1.48 16 34 H 0.41 6.20 7.66 -92.71 -0.71 5.49 16 35 H 0.08 2.47 7.90 -2.39 -0.02 2.46 16 36 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 37 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.02 0.72 7.85 -2.39 -0.02 0.70 16 39 H 0.37 19.98 7.67 -92.70 -0.71 19.27 16 40 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 41 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.10 1.99 8.10 -2.38 -0.02 1.97 16 43 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.05 1.05 8.14 -2.39 -0.02 1.04 16 46 H 0.08 2.36 4.69 -2.39 -0.01 2.35 16 47 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 48 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 49 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 50 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.08 2.15 4.59 -2.39 -0.01 2.14 16 Total: -1.00 -75.16 404.86 2.86 -72.30 By element: Atomic # 1 Polarization: 34.48 SS G_CDS: -0.48 Total: 34.00 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 7.34 Total: -7.27 kcal Atomic # 7 Polarization: -124.77 SS G_CDS: -5.98 Total: -130.75 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -0.04 Total: -16.45 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Total: -75.16 2.86 -72.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725366988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.978 kcal (2) G-P(sol) polarization free energy of solvation -75.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds